sp|Q8RXE9|SYWM_ARATH ----> Tryptophan--tRNA ligase, chloroplastic/mitochondrial


Intron 1 GTGAGCTTCA ... ACTCAAGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A116.6755111
A227.12431116
A310.715026
A429.4124410
A512.823415
A610.88131016
A76.57199014
A85.2916109
A99.35194020
A1010.23158318



>TRINITY_DN114891_c0_g1_i14 from sample A2 / Example spliced isoform
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACAACGTAAGTTTTTAAAAGCGTTTCACAGAGCAAGGTTTAAGAACTCTTTTGGCATTCCCGTTTTCCCTGGGGGTATGGTAATATATATGTTTTCCTTTG
TTGCTCAGATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATT
ACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATC
AAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCAC
ATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACAC
GTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACA
AAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGT
AATTGCACATCTAGAACCTATCCAGGCACGATACGAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATT
TATGTTCCTATAGCAATTAAGAAAACAATTATTTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCAAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGAT


>TRINITY_DN114891_c0_g1_i8 from sample A2 / Example unspliced isoform:
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGT
CAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCT
TCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGAC
GAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTG
GGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGGTGAGTCCTTGAAATATTTCCTTTATAGCC
ATGTTGGAAATTCTTGAGGAGATATGATGCATTGCTGTATTTAAAATCCGAAGTATGCATGGGAGGCTTTAGACTTTAGCATTACTGGATTTACATTCAAGGAATCATCCATGGAGGATTGTGGCATTGCTGTATGTATTTAAAGTCATGAAAGCATACACGGGTGAGACAACTCTAATGTTTGATGTGTTTTGTTGACA
GACGTGGAGGAAAACTCTTTAAGgtgagcttcaggtcttacattctatgattctttttagttgacagaacttatatgttagcttatttaagttatctactcaagcagATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAG
TCTCGAATCAACCTTCTGGATACAAAAGAT




Intron 2 GCCTCGGTTT ... GCCCACGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A195.1211920
A285.7131521
A383.7831516
A410001011
A590.481118
A680.2872730
A785.5463635
A888.8932226
A988.9964354
A108294537



>TRINITY_DN44584_c1_g1_i8 from sample A8 / Example spliced isoform
CCCGTTTTCCCTGGGGGTATGGTAATATATATGTTTTCCTTTGTTGCTCAGATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCT
CGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCA
ACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGAGCT
CA
CATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGG


>TRINITY_DN44584_c1_g1_i3 from sample A8 / Example unspliced isoform:
CCCGTTTTCCCTGGGGGTATGGTAATATATATGTTTTCCTTTGTTGCTCAGATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCT
CGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGTCTGCAAATGCCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCA
ACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGgcct
cggtttttgcacaatcacatgtatcggcccacgcag
AGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTA
GTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAA
ATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATCCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTGACGCAGGAATGCAAGG
ACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGTAATTGCACATCTAGAACCTATCCAGGCACGATACGAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGC
AAGAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATTTATGTTCCTATAGCAATTAAGAAAACAATTAATTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCGAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACT
CAAACAATCTCACAGAGAGAGTATTGATAACGTATTTGCAATCCTCTGAAGGTTGCATAAATTTTGTAATGGTAGTTGTAATAACATTTAATGACAAGTACCTAACAATTCAATTTTTTTTATGGTGTAAGCAACTTTATATTAGTGGTTCTGATTCATGTGCAAATTGTACTAAGAATCACAATGTTTTTGTCACCAAT
ATTTGTTCAAAAATGACTCGAAGCTGA




Intron 3 GTGCCATTAA ... TGCTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A124.3228513
A25.882403
A32.73602
A415.493029
A526.671144
A65.886444
A76.256026
A89.466777
A916.5878427
A107.696046



>TRINITY_DN100558_c0_g1_i7 from sample A5 / Example spliced isoform
CCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATT
GATACCGCTAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCAT
CAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCC
CTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGAC
TAAGCAGGAAGTCACGCAGGAATGCAAGG


>TRINITY_DN100558_c0_g1_i8 from sample A5 / Example unspliced isoform:
GCAATGGGTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCGTAAGTTTTTAAAAGCGTTTCACAGAGCAAGGTTTAAGAACTCTTTTGGCATTCCCGTTTTCCCTGGGGTATGGTAATATATATTTTTTCCTTTGTCGCTCAGATTCACGAGAAAAT
ACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGCACGCCCTGCCTGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCG
TCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGTCTGCAAATGCCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGG
ATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCTAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACA
CCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGgtgccattaacagtcttatttggtttctgttgtctatgaaacattgtgtcaaagttctttg
gcatgttgtatccagcaatgaagattcagggctagtaattgatactttttgattttagtatgagctatcaagagcatggatttctttgatgagatagatggatgctttgcag
TGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGG
GTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAA
ACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGG




Intron 4 GTAACCATTT ... CGTTAAACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A117.951625
A214.291532
A320.692375
A425.581674
A536.8418138
A618.181862
A720.8338137
A817.462692
A919.3348158
A1010.712542



>TRINITY_DN100558_c0_g1_i8 from sample A5 / Example spliced isoform
GCAATGGGTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCGTAAGTTTTTAAAAGCGTTTCACAGAGCAAGGTTTAAGAACTCTTTTGGCATTCCCGTTTTCCCTGGGGTATGGTAATATATATTTTTTCCTTTGTCGCTCAGATTCACGAGAAAAT
ACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGCACGCCCTGCCTGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCG
TCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGTCTGCAAATGCCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGG
ATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCTAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACA
CCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGGTGCCATTAACAGTCTTATTTGGTTTCTGTTGTCTATGAAACATTGTGTCAAAGTTCTTTG
GCATGTTGTATCCAGCAATGAAGATTCAGGGCTAGTAATTGATACTTTTTGATTTTAGTATGAGCTATCAAGAGCATGGATTTCTTTGATGAGATAGATGGATGCTTTGCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGG
GTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAA
ACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGG


>TRINITY_DN100558_c0_g1_i6 from sample A5 / Example unspliced isoform:
GCAATGGGTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCGTAAGTTTTTAAAAGCGTTTCACAGAGCAAGGTTTAAGAACTCTTTTGGCATTCCCGTTTTCCCTGGGGTATGGTAATATATATTTTTTCCTTTGTCGCTCAGATTCACGAGAAAAT
ACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGCACGCCCTGCCTGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACgtaaccatttcatttcccttcccatatattttttttcatttccacagc
aaattttcacatgtcatcttcgatggaaatctcgagcattactcgattctgacctcgttaaacag
TATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATT
GTCTGCAAATGCCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGC




Intron 5 GTAAGTTTTT ... TGTTGCTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1559111
A248.1514313
A364.716111
A435.71905
A571.43245
A662.512220
A747.4631028
A839.131419
A954.8428834
A1056.67131217



>TRINITY_DN42715_c0_g1_i5 from sample A9 / Example spliced isoform
GTTTTGATTGCACCCCGAGGTGCAATGGGTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACAACATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGT
CAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGTCTGCAAATGCCGTTCCCGTCAAGAAG
AGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGG
AATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCC
TTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGAT
GGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGA
AGTGACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGTAATTGCACATCTAGAACCTATCCAGGCACGATACAAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATG
CTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATTTATGTTCCTATAGCAATTAAGAAAACAATTATTTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCGAGTTCCAATCCTTTTGTAGAACGAAA
TACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGATAACGTATTTGCAATCCTCTGAAGGTTGCATAAATTTTGTAATGGTAGTTGTAATAACATTTAATGACAAGCACCTAACATTTCAATTTTTTTTATGGTGTAAGCAACTTTATATTAGTGGTTCTGATTCATGTGCAAATTGTACTAAGAATC
ACAATGTTTTTGTCACCAATATTTGTTCAAAAATGACTCGAAGCTGAGCAATTTTGAGCAGGAGGATGTATCACCTCAATTTC


>TRINITY_DN42715_c0_g1_i3 from sample A9 / Example unspliced isoform:
GTTTTGATTGCACCCCGAGGTGCAATGGGTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACAACgtaagtttttaaaagcgtttcacagagcaaggtttaagaactcttttggcattcccgttttccctgggggtatggtaatatatatgttttcctttg
ttgctcag
ATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCG
CGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGTCTGCAAATGCCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAA
ACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTG
GTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATG
GGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGC
AAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTGACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGTAATTGCACATCTAGAACCTATCCAGGCACGATA
CAAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATTTATGTTCCTATAGCAATTAAGAAAACAATTATT
TTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCGAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGATAACGTATTTGCAATCCTCTGAAGGTTGCATAAATTTTGTAATGGTAGT
TGTAATAACATTTAATGACAAGCACCTAACATTTCAATTTTTTTTATGGTGTAAGCAACTTTATATTAGTGGTTCTGATTCATGTGCAAATTGTACTAAGAATCACAATGTTTTTGTCACCAATATTTGTTCAAAAATGACTCGAAGCTGAGCAATTTTGAGCAGGAGGATGTATCACCTCAATTTC




Intron 6 GTGAGTCCTT ... TTGTTGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A118.4653120
A210.263549
A317.654292
A427.7826101
A514.292441
A63.5410940
A77.19155120
A8513371
A912.62159.3230
A106.212180



>TRINITY_DN114891_c0_g1_i14 from sample A2 / Example spliced isoform
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACAACGTAAGTTTTTAAAAGCGTTTCACAGAGCAAGGTTTAAGAACTCTTTTGGCATTCCCGTTTTCCCTGGGGGTATGGTAATATATATGTTTTCCTTTG
TTGCTCAGATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATT
ACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATC
AAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCAC
ATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACAC
GTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACA
AAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGT
AATTGCACATCTAGAACCTATCCAGGCACGATACGAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATT
TATGTTCCTATAGCAATTAAGAAAACAATTATTTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCAAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGAT


>TRINITY_DN114891_c0_g1_i8 from sample A2 / Example unspliced isoform:
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGT
CAATGGCCATGGCATTGTTTCCCCGTACGCCCTGCCGGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCT
TCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGAC
GAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCAAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTG
GGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGgtgagtccttgaaatatttcctttatagcc
atgttggaaattcttgaggagatatgatgcattgctgtatttaaaatccgaagtatgcatgggaggctttagactttagcattactggatttacattcaaggaatcatccatggaggattgtggcattgctgtatgtatttaaagtcatgaaagcatacacgggtgagacaactctaatgtttgatgtgttttgttgaca
g
ACGTGGAGGAAAACTCTTTAAGGTGAGCTTCAGGTCTTACATTCTATGATTCTTTTTAGTTGACAGAACTTATATGTTAGCTTATTTAAGTTATCTACTCAAGCAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAG
TCTCGAATCAACCTTCTGGATACAAAAGAT




Intron 7 GTAAGTTTTT ... TGTCGCTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A152.639110
A248.1514313
A364.716111
A435.71905
A571.43245
A664.5211220
A748.2830028
A839.131419
A954.8428834
A1056.67131217



>TRINITY_DN48470_c0_g2_i5 from sample A10 / Example spliced isoform
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGT
CAATGGCCATGGCATTGTTTCCCCGCACGCCCTGCCTGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTACTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCT
TCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCAAGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGAC
GAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCTAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACATGGTTGCTAAATTGCGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGAACGGGGTTGC
TGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCA
CCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAACCTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTAT
ATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGATTGCTGATGCTGTAATTGCACATCTAGAACCTATCCAGGCACGATACGAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTA
TAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCAGGGAAGAGTATTTATGTTCCTATAGCAATTAAGAAAACAATTATTTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAA
ATCCCCGAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGATAACGTATTTGCAATCCTCTGAAGGTTGCATAAATTTTGTAATGGTAGTTGTAATAACATTTAATGACAAGCACCTAACATTTCAATTTTTTTTATGGTGTAAGCAACTTTATATTAGTG
GTTCTGATTCATGTGC


>TRINITY_DN48470_c0_g2_i4 from sample A10 / Example unspliced isoform:
GTTTTGATTGCACCCCGAGGTGCAATGGCTAGTTTAAAATTTATACAGGGTTTAAAACTTGGTCACACTTGGCCCTGGTAAAAAAGGGTTTGTACGACAACACCgtaagtttttaaaagcgtttcacagagcaaggtttaagaactcttttggcattcccgttttccctggggtatggtaatatatattttttcctttgt
cgctcag
ATTCACGAGAAAATACAAAGATAAGGCGGAAGCACTTTGCCTTTCATCTTTTTCTCGCAGAAGCTACTCACATAATTCTGTGGCAAATGGCAAGGTCAATGGCCATGGCATTGTTTCCCCGCACGCCCTGCCTGTACTCTTCGCCTTCTCGCCTCTGCTTCTTCACTATTTCTCGCCAGGGCCGAACCAATTA
CTTGAATTCCAGACGTAATCGTCTCGACCCCGCGTATATTCTAACTGAAAGGATTCGGTGTTACTCTGCTTCTGCTGAAGATTCAACAATTTCTTCATCTTCTTCATTGAGTGCAAATACCGTTCCCGTCAAGAAGAGGGTTGTTTCGGGTGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCCATCA
AGAATTGGGTGTCTTTGCAGGATACTTATGAAACCCTCTTCTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGGTGACGAAGGATGCAGCAGCCATATATATAGCTTGCGGAATTGATACCGCTAAGGCCTCGGTTTTTGCACAATCACATGTATCGGCCCACGCAGAGCTCACA
TGGTTGCTAAATTGCGTCACACCTATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGTGCGTCTTTATTGGGGATGAGAATGTGGGAACGGGGTTGCTGACTTATCCTGTTCTTATGGCATCAGACATCCTTCTATATCAGTGTGACTTAGTCCCAGTGGGCGATGATCAAAAGCAGCATC
TAGAGTTGACACGTGAATTAGCAGAGAGGGTGAATTTTCTGTATGGGGGTAGGAAATGGAAGAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTCCACCAGAAGGAGCTCGTATTATGTCCCTTACGGATGGGCTGTCAAAGATGTCAAAATCAGCACCTTCTGATCAGTCTCGAATCAAC
CTTCTGGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATTCGGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAGTTGGTAACTGGGAAGACTAAGCAGGAAGTCACGCAGGAATGCAAGGACATGAACTGGGGACAATTCAAGCCTCTGAT
TGCTGATGCTGTAATTGCACATCTAGAACCTATCCAGGCACGATACGAAGAGATTACTTCAGATTCTACATACCTGGATAGTGTTCTGGAAGAAGGAGCTACGAAGGCAGCTGCTATAGCAGACACTACTTTAAGGAATGTATACGATGCTATGGGCTTTCTGCCTTGCAAAAGACACTAGTGTTTTAATTACAATATCA
GGGAAGAGTATTTATGTTCCTATAGCAATTAAGAAAACAATTATTTTTTAACTATTTATCTGCCAAGATTTACCCATCTTATTGTTTTAAAAGAGCATTAAAAATAAATTCCAAAAATCCCCGAGTTCCAATCCTTTTGTAGAACGAAATACAGGAAAAAACATTAACTCAAACAATCTCACAGAGAGAGTATTGATAAC
GTATTTGCAATCCTCTGAAGGTTGCATAAATTTTGTAATGGTAGTTGTAATAACATTTAATGACAAGCACCTAACATTTCAATTTTTTTTATGGTGTAAGCAACTTTATATTAGTGGTTCTGATTCATGTGC