sp|Q9SZ15|LIP5_ARATH ----> Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5

Intron 1 GTAAGCCACC ... TTGATCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.52	32	5	73
A2	71.74	13	4	33
A3	75.81	15	12	47
A4	75.47	13	1	40
A5	64.52	11	0	20
A6	83.58	11	3	56
A7	73.49	22	8	61
A8	77.19	13	3	44
A9	78.49	20	8	73
A10	80.95	20	17	85

>TRINITY_DN114771_c0_g1_i3 from sample A3 / Example spliced isoform

TGGGCTTTGAAAAAGAAAATTCCCGGGAACCTTAGCTAACAATTGAGATCTTTCATCCCCTTTCAAACTCTCGGACTGCAATATAGAACAGCCATGGGGAGCAACACCGAGCCTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAACATGAGCATCTGGTGGCCTATTATTGCCGTCTATATGC
AATGGAGCGAGGGCTGAGGATTCCCCAAAAGGAAAAGACCAAAACAACAAGCGCCCTACTGTTTTCCTTGATGAATCAGCTGGAGAAGGACAGGAAGGCTTTGACGTTGGGTCCCGATGATAATCTTTATGTAGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAACAAGATAGAGCAGGACGAGCAGACTTGT
ATGACCATTTCAAAATAATTTAATTGTGTTTATGGCCATTGTGCAATGTTTGGATTTTTTATATTTATCTGTAGTTTTCTCAGTGTCCAATCTAGTCATCGAT

>TRINITY_DN114771_c0_g1_i7 from sample A3 / Example unspliced isoform:

TGGGCTTTGAAAAAGAAAATTCCCGGGAACCTTAGCTAACAAgtaagccaccggcagagagtgccaattcaaagcctttttgttaatggtgtccgaacaatctatgtttcatttcatttttcctgtttatggttatgcagttctattggcagctgcaaacctttttccttttacttcattgtgctggcagttttggattg
ctgattgttgatcgcagTTGAGATCTTTCATCCCCTTTCAAACTCTCGGACTGCAATATAGAACAGCCATGGGGAGCAACACCGAGCCTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAACATGAGCATCTGGTGGCCTATTATTGCCGTCTATATGCAATGGAGCGAGGGCTGAGGATTCCC
CAAAAGGAAAAGACCAAAACAACAAGCGCCCTACTGTTTTCCTTGATGAATCAGCTGGAGAAGGACAGGAAGGCTTTGACGTTGGGTCCCGATGATAATCTTTATGTAGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAACAAGATAGAGCAGGGCGGGCAGACTTGAATACTGCAAAGACGTTTTATGCAGC
AAGCATATTTTTTGAGATTCTCCACCAGTTTGGTGAACTACAACCTGAAATTGAACAGAAACAGAAATATGCAGTCTGGAAGGCTGCAGAGATACGGAAAGCAATAAAAGAAGGAAGGAGACCAGAACCAGGCCCTCCTGGTGGTGATGAAGATCTGTCAGTACCTGTGGATCCTTCATTGGAAGGAGATAAATCATCTG
AACAATTTTGGCCAGATAAGTCTCAAGCAGGAAAGCAAAAAGATTCAGAAAAGCCGGTTCGAAATGCAGGAGGAGAGCAAGAATCTCCATCTCAATTCCCAAGAAGTGTTCAACACTATTCTGCAGATGAGATGGGTACAACTCCAGCTTTTTCTGCCCCGGAGTATCAGACAACAACAGTCCAAGCTCCAACTTCTTTG
CCCCCGGATTATCAGACAACAGCAGTCCATGGTTCTCATTTACAGACCCCGCAGGAATTTTCAGAGTATTCTCAGGGCAGCCCAAATGCATATGCACCATCCTACTATACCATGCCAGCAACACTGCAAGATACCCATACTGGTGAATTGGGTGCAGCATATCCTTATTCATCAACAACTTCATCACATGATAATGTAAA
TTCTCTCCGGCTTAATCATTCGTTTTCAACAGTGCATGATGGGAGTCTGGATTCTCAATCAGGAAGCCATGGCTCTTACCCTTCAAATGCTTCATATTATCAAAATACAAATGGTAGTCACTCTGGGACAGTCCCTTATCATTTGAATTCTCAACCAAATCCAGATTACCAACCTAACACATTGGTTACGGGGACAAATG
GAGCATATGGTGGAAGAAGACAGCCAGAGCACATCTCTACTGTGCCAGAAGCTTCCCCAGCTGTGGCATATTCTTATGATAGAAATTACCAGCCCCCGCCTGAGAAAATTGCTGAGGCACACAAGGCAGCAAAGCTTGCCATTGGATCACTTGCATTCGATGACGTAACTGCTGCAGTGGATTATCTGAAACGGTCATTG
GAGTTGTTGACACTTCCATCGAGTAACTAGGGACTCATTAGGACTCATTATTTAGGTTTCATCAGAGTTAAAGTTTACAAGCATCTTGTTTGGTTTGCCCTTGTGCAATGAATATTGTATAAAGTTTTCCTCTCTGGAATAAAAAATTACCTTCTCGCTGTCACCGGAATGACTCCAGGTGATTACTTACATGAGTTTTT
TAATTTTTCAAGTGCTGTTTCTTGTGCAAGAAACATTGTATAAAGTTTTCACTCTTTCCAAGAGCAATTACCTCATTGGTTGCACGAGGACTGGTTCGTCTTTTGATATAAATGTACTGAGTTTAGGTTGTC

Intron 2 GTAAGCCACC ... GGTTATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	73.81	11	5	31
A2	64.29	10	4	18
A3	69.39	15	12	34
A4	60.87	9	1	14
A5	71.43	2	0	5
A6	61.67	23	3	37
A7	74.47	12	8	35
A8	69.05	13	3	29
A9	61.33	29	8	46
A10	72.45	27	17	71

>TRINITY_DN44962_c1_g1_i1 from sample A10 / Example spliced isoform

AGTGGACCCATTGGGCTTTGAAAAAGAAAATTCCCGGGAACCTTAGCTAACAATTCTATTGGCAGCTGCAAACCTTTTTCCTTTTACTTCATTGTGCTGGCAGTTTTGGATTGCTGATTGTTGATCGCAGTTGAGATCTTTCATCCCCTTTCAAACTCTCGGACTGCAATACAGAACAGCCATGGGGAGCAACACCGAGC
CTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAACATGAGCATCTGGTGGCCTATTATTGCCGTCTATATGCAATGGAGCGAGGGCTGAGGATTCCCCAAAAGGAAAAGACCAAAACAACAAGCGCCCTACTGTTTTCCTTGA
TGAATCAGCTGGAGAAGGACAGGAAGGCTTTGACGTTGGGTCCCGATGATAATCTTTATGTAGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAACAAGATAGAGCAGGGCGGGCAGACTTGAATACTGCAAAGACGTTTTATGCAGCAAGCATATTTTTTGAGATTCTCCACCAGTTTGGTGAACTACAACCT
GAAATTGAACAGAAACAGAAATATGCAGTCTGGAAGGCTGCAGAGATACGGAAAGCAATAAAAGAAGGAAGGAGACCAGAACCAGGCCCTCCTGGCGGTGATGAAGATCTGTCAGTACCTGTGGATCCTTCATTGGAAGGAGATAAATCATCTGAACAATTTTGGCCAGATAAGTCTCAAGCAGGAAAGCAAAAAGATTC
AGAAAAGCCGGTTCGAAATGCAGGAGGAGAGCAAGAATCTCCATCTCAATTCCCAAGAAGTGTTCAACACTATTCTGCAGATGAGATGGGTACAACTCCAGCTTTTTCTGCCCCGGAGTATCAGACAACAACAGTCCAAGCTCCAACTTCTTTGCCCCCGGATTATCAGACAACAGCAGTCCATGGTTCTCATTTACAGA
CCCCACAGGATTTTTCACAGTATTCTCAGGGCAGCCCTATTGCATATGCACCATCCTACTATACCATGCCAGCAACACTGCAAGATACCCATACTGGTGAATTGGGTGCAGCATATCCTTATTCATCAACAACTTCATCACATGAGAACACAAATTCTCCCCGGCTTAATCATTCTTTTTCAACAGTGCATGATGGGAGT
CTGGATTCTCAAGCAGGAACCCATGGCTCTTACCCTTCCAATGCTTCATATTATCAAAATACAAATGGTAGTCACCCTGGGACAGTTCCTTATCATTTGAATCCTCAATCAAATCCAGAGTACCAACCTAACACACATTATACTTCGATTACACGTACAAATGGAGCATATGCTGAAAGAAGACAGCCAGAGCACATCTC
TACTGTGCCAGAAGCTGCCCCAGCTGTTGCATATTCTTGTGATAGAAACTACCAGCCACCCCCTGAGAAAATTGCTGAGGCACACAAGGCAGCAAAGCTTGCCATTGGATCACTTGCATTTGATGACGTACCTGCTGCAGTGGATTATCTGAAACGGTCACTGGAGTTGTTAACACTTCCATCAACTAAGTAGGGGCTCA
TTATTTAGGTTTCATCAGAGATAAAGGTGGAATTAATTTCAAGTTTACAAGCATATTGTTTGGTTTGTCGTTGTGCAATAAATATTGTATACAGATTTCACTTTCTGGAATAAAATTACCTTTTCGCTGTCACTGGAATGACTCCAGGTTATCACTTACATGAGTTTTTATTTTTCATGTGCAATGTCTCTTGTGCAAGA
AATATTGTATAAAGTTTTCACTTTCTGGAAGAGCAATTTCCTCATTGGTTGCACAACAAGGATTGGTTCGTCTTTTGATATAATTGTACCGGAGTTGGGGTTTTCATGTAACTGATTTCTCAAGAAATCTGTGATGTTTTTGCTGTGTAAATATATTGAAGTAATGTATATTGGTCTTATCATTTCAAAAA

>TRINITY_DN44962_c1_g1_i4 from sample A10 / Example unspliced isoform:

AGTGGACCCATTGGGCTTTGAAAAAGAAAATTCCCGGGAACCTTAGCTAACAAgtaagccaccggcagagagtgccaattcaaagcctttttgttaatggtgtccgaacaatctatgtttcatttcatttttcctgtttatggttatgcagTTCTATTGGCAGCTGCAAACCTTTTTCCTTTTACTTCATTGTGCTGGCA
GTTTTGGATTGCTGATTGTTGATCGCAGTTGAGATCTTTCATCCCCTTTCAAACTCTCGGACTGCAATACAGAACAGCCATGGGGAGCAACACCGAGCCTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAAAAATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAACATGAGCATCT
GGTGGCCTATTATTGCCGTCTATATGCAATGGAGCGAGGGCTGAGGATTCCCCAAAAGGAAAAGACCAAAACAACAAGCGCCCTACTGTTTTCCTTGATGAATCAGCTGGAGAAGGACAGGAAGGCTTTGACGTTGGGTCCCGATGATAATCTTTATGTAGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAAC
AAGATAGAGCAGGGCGGGCAGACTTGAATACTGCAAAGACGTTTTATGCAGCAAGCATATTTTTTGAGATTCTCCACCAGTTTGGTGAACTACAACCTGAAATTGAACAGAAACAGAAATATGCAGTCTGGAAGGCTGCAGAGATACGGAAAGCAATAAAAGAAGGAAGGAGACCAGAACCAGGCCCTCCTGGCGGTGAT
GAAGATCTGTCAGTACCTGTGGATCCTTCATTGGAAGGAGATAAATCATCTGAACAATTTTGGCCAGATAAGTCTCAAGCAGGAAAGCAAAAAGATTCAGAAAAGCCGGTTCGAAATGCAGGAGGAGAGCAAGAATCTCCATCTCAATTCCCAAGAAGTGTTCAACACTATTCTGCAGATGAGATGGGTACAACTCCAGC
TTTTTCTGCCCCGGAGTATCAGACAACAACAGTCCAAGCTCCAACTTCTTTGCCCCCGGATTATCAGACAACAGCAGTCCATGGTTCTCATTTACAGACCCCACAGGATTTTTCACAGTATTCTCAGGGCAGCCCTATTGCATATGCACCATCCTACTATACCATGCCAGCAACACTGCAAGATACCCATACTGGTGAAT
TGGGTGCAGCATATCCTTATTCATCAACAACTTCATCACATGAGAACACAAATTCTCCCCGGCTTAATCATTCTTTTTCAACAGTGCATGATGGGAGTCTGGATTCTCAAGCAGGAACCCATGGCTCTTACCCTTCCAATGCTTCATATTATCAAAATACAAATGGTAGTCACCCTGGGACAGTTCCTTATCATTTGAAT
CCTCAATCAAATCCAGAGTACCAACCTAACACACATTATACTTCGATTACACGTACAAATGGAGCATATGCTGAAAGAAGACAGCCAGAGCACATCTCTACTGTGCCAGAAGCTGCCCCAGCTGTTGCATATTCTTGTGATAGAAACTACCAGCCACCCCCTGAGAAAATTGCTGAGGCACACAAGGCAGCAAAGCTTGC
CATTGGATCACTTGCATTTGATGACGTACCTGCTGCAGTGGATTATCTGAAACGGTCACTGGAGTTGTTAACACTTCCATCAACTAAGTAGGGGCTCATTATTTAGGTTTCATCAGAGATAAAGGTGGAATTAATTTCAAGTTTACAAGCATATTGTTTGGTTTGTCGTTGTGCAATAAATATTGTATACAGATTTCACT
TTCTGGAATAAAATTACCTTTTCGCTGTCACTGGAATGACTCCAGGTTATCACTTACATGAGTTTTTATTTTTCATGTGCAATGTCTCTTGTGCAAGAAATATTGTATAAAGTTTTCACTTTCTGGAAGAGCAATTTCCTCATTGGTTGCACAACAAGGATTGGTTCGTCTTTTGATATAATTGTACCGGAGTTGGGGTT
TTCATGTAACTGATTTCTCAAGAAATCTGTGATGTTTTTGCTGTGTAAATATATTGAAGTAATGTATATTGGTCTTATCATTTCAAAAA