sp|Q9SGZ8|FLZ6_ARATH ----> FCS-Like Zinc finger 6
Intron 1 GTCGGTTGGT ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 2 | 2 |
| A2 | 25 | 6 | 2 | 2 |
| A3 | 25 | 3 | 1 | 1 |
| A4 | 25 | 3 | 2 | 0 |
| A5 | 57.89 | 4 | 5 | 6 |
| A6 | 9.09 | 20 | 0 | 4 |
| A7 | 26.92 | 19 | 5 | 9 |
| A8 | 51.52 | 16 | 15 | 19 |
| A9 | 28.89 | 16 | 7 | 6 |
| A10 | 15.79 | 8 | 0 | 3 |
>TRINITY_DN44854_c0_g1_i8 from sample A9 / Example spliced isoformGTGGAAGAACTAAAGGTTGATCCTGCCACACGGTTTCTTTTTGTTTAATGAAAGTCTTTTGCCATGCAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTCGAGCCTGCCACGCAGGAGAACTATTTTAGATGCTCTGTTAACACCTTTGGTGTAAAGAAAACGGTGGAACGCGACGCCCGTGATAAGGGAAAGCT
GAATTCGAACCTCCAAAGCTTGGCAGGTAAAGCTGAATTCGAACATCCACCTAGACATCTACATGTACAGGGGCGATAGAGAATTTTGCAGCGTGGAGTGCCGATTGAAACAGATAAACATGGATGAACAGTGTGAAAAATGTGCTTCTGCTGCCCTGGAACGGTTTGTAACGACGACCTCACCACGGGCTCGACGTTCT
GACGGGAATCGAACCTGCATCCAAGCAAGGGTAGTAACAACTGCTGCATAGTATGGCGAGTTCGACCTCTAGTACTGAAGTATAACTATACATCTAAGCTGTAATGTCGTCGGTATAATACAAAGTAAAAAGTATTACATGGTTTAGTATTTCTTTTTGACATATGAATTTTGTTGGAACCCATGATCTATTCTTGGCAA
GCACTCAAGATCATATTTTCCCGATGGAACTACTCTTCGTAGCTATTAAAGGATTTAGTTACACCATTAATGGACTTGAAAGTATTTTGTGGTAAGCGCCTTCAATTTTAATATGGTTGATCCAATGGAAGCTCAGGTTCGAATTTTTTATTGGATGATTTATAACTACAAGGTGTCTTATGGGACAGGAAGGCTTGAAA
CAAGGCAGTACTGTCGTGGCTTGGGTTTCCAGAAATTGTAAGAAAGCAAGGTTTCCACTGAAGCAACTTCGTCTTCCTCGGCTATCTGTAATACATATTTTGTAGAGAAATATAACCACAGGAGGATCCCAAAATTATGCAAGCAAGGACACCATGTACTTGTAAGGAGCGAGGCGATACGCGTAAGAAATTGAAGTATG
CTTGAATTGGACCATATTTGCATAAGTGGAGGCCATGCATTGGAAGCTGTATCTCAACGGAAGAAATATCTAGGTTGAAAATCTCTCAATGTTGAAGGACTAAACTTAGGTAATTGGTCAAATGCCTATAAAAAAACCTGGAAACTCTACCACAAGCCAGTTAATTTTCAATGGAAAGAACTGCACATCAAGACTGGTGT
CTAAGGATGTTCAAAAAGACATGTTCAAAAAGACTCCAAACTCAGGGAGAATAGGAGTGCAATGGCTCATAATTAGAGTAACGTAGAATGGGATCTGAGAGATCCTGAAGGTATCTGATAATGATAATTTGTATGGTAAGGATAGTGTCGTTCAATCATGGCTATAAAATTAATGAGATAATGTAGATCTTTGGAGGTTT
TGCAGTTAAAAATTCATTAGTTATTAGGGGAGGGATTCCAGTTGTTGAACGGGGTACCAGTAGTGGATATAGAAGTGGTGTTGGCTGATGTCAATTTTGGAAATACTTGGTACCATTTGTTGTTTATAAAAGTACTTTATGTACAAGTCATTGTCAATATTTTTCATGGTTTTAAAATTATTTATGAAAAAAA
>TRINITY_DN44854_c0_g1_i9 from sample A9 / Example unspliced isoform:GTGGAAGAACTAAAGGTTGATCCTGCCACACGGTTTCTTTTTGTTTAATGAAAGTCTTTTGCCATGCAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTCGAGCCTGCCACGCAGGAgtcggttggttaaccgagacgctccagaattaattcttgtgttattatatgtgccgacttctcactcaactgtttgtt
tgcagGAACTATTTTAGATGCTCTGTTAACACCTTTGGTGTAAAGAAAACGGTGGAACGCGACGCCCGTGATAAGGGAAAGCTGAATTCGAACCTCCAAAGCTTGGCAGGTAAAGCTGAATTCGAACATCCACCTAGACATCTACATGTACAGGTAATGAATCAATCATTTCTTTAATGTTTGCTATTGTTATTCCTTTT
ATATGGCGGAAAACCTAGATTTTTTTCATGAAGTCTATGATGGACATAGTGGTTGCTATAATTTATA
Intron 2 GTTGGTTAAC ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 2 | 4 | 2 |
| A2 | 20.86 | 6.8 | 2 | 1.6 |
| A3 | 22 | 3.6 | 1 | 1 |
| A4 | 33.33 | 2 | 2 | 0 |
| A5 | 57.89 | 4 | 5 | 6 |
| A6 | 6.34 | 20.6 | 0 | 3.2 |
| A7 | 23.23 | 21.8 | 5 | 8 |
| A8 | 54.53 | 14.4 | 15 | 17.6 |
| A9 | 29.37 | 14.8 | 7 | 5 |
| A10 | 10.52 | 8.4 | 0 | 2.4 |
>TRINITY_DN60494_c0_g1_i2 from sample A1 / Example spliced isoformATTTCTTTTGTTTAATCGAATGGGAGAACAAAAGATTGAACCTGTGGAAGAACTAAAGGTTGATCCTGCCACACGGTTTCTTTTTGTTTAATGAAAGTCTTTTGCCATGCAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTCGAGCCTGCCACGCAGGAGTCGGAACTATTTTAGATGCTCTGTTAACACCTTT
GGTGTAAAGAAAACGGTGGAACGCGACGCCCGTGATAAG
>TRINITY_DN60494_c0_g1_i1 from sample A1 / Example unspliced isoform:ATTTCTTTTGTTTAATCGAATGGGAGAACAAAAGATTGAACCTGTGGAAGAACTAAAGGTTGATCCTGCCACACGGTTTCTTTTTGTTTAATGAAAGTCTTTTGCCATGCAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTCGAGCCTGCCACGCAGGAGTCGgttggttaaccgagacgctccagaattaatt
cttgtgttattatatgtgccgacttctcactcaactgtttgtttgcagGAACTATTTTAGATGCTCTGTTAACACCTTTGGTGTAAAGAAAACGGTGGAACGCGACGCCCGTGATAAG
Intron 3 GTACCCACCT ... TGGTATGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 100 | 0 | 4 | 4 |
| A3 | 33.33 | 3 | 3 | 0 |
| A4 | 81.82 | 1 | 5 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 25 | 6 | 1 | 3 |
| A7 | 39.13 | 7 | 3 | 6 |
| A8 | 40 | 3 | 1 | 3 |
| A9 | 54.55 | 5 | 3 | 9 |
| A10 | 50 | 3 | 2 | 4 |
>TRINITY_DN45135_c1_g3_i3 from sample A6 / Example spliced isoformCGAAATTGAAAGAAGCATCTTACGAGCACTTATTACAGGTCCTTTGAAGAGTAGGATAGGTAGGGCTACAGGGATCTCACATGTTGATATTTTTCCGCCTCCTTATTTTTTTCTGAAGACATTCCTCTTTCTCTCCGCGTTTGGTCCTCTGTTCGAAGCTGATCGTGTACCTTCCCAGGGTTCTGGAAACTACTTGTCAT
AATATCCTTCATAGGTTTGGTTTGTGGGTGAAGGACAGATGAAACCTCCTTGGAGAAGCTCCAGGGATACCTGTGCCAAAGCGATCTCTACCTCTCAGCATGGTCCGGCTTCTGTTCAAACAAATATGTATATCTGGCCCTAAAATAAAATTTTAGGGAATATTCACACGGCCTGCCATCCAAACACTGTAACAGAAATG
AATACACTGTAACACAAACACAGAGTTAAGAGGAGAATGTCTACGCGCAGGGAAAGGCAACAAACTTTATAAAGTAGTGGAATGGCGGTTTTGGTAGCAACGGCTACAATTTTGATTAGCTTTTTAGAGTATATTCTTTCACTGCCACCTTCAAATGAATTGATCTCCAGACGCAACAAACTAATATAATATATTTTTCG
CGGGAGGCGCTTCAATGAGTTTTTGTGTGTATATGGAGCGCGATGGTAGCTTTTTAATTGAGATTAAGGATGAAACGTTAAGATGGGAAATCTAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTCGAGCCTGCCACGCAGGAGTCGGAACTATTTTAGATGCTCTGTTAACACCTTTGGTGTAAAGAAAACGGT
GGAACGCGACGCCCGTGATAAGGGAAAGCTGAATTCGAACCTCCAAAGCTTGGCAGGTAAAGCTGAATTCGAACATCCACCTAGACATCTACATGTACAGACGATAAAGAAATCAGCTTAGGTGATGAACTATCACCTGTCAAAGTGCAAAGCCAACCCGTGTCTTTTTTCGTCTCTAATTATGACCCTGGTCCCGAGTT
ATCTGAAATCTTCAATAACCCGTCAATTCTAATGGTTTGCTGATGAGGGAGCTTTTTACCTATGAACCTCCTAGGCCGAGTTCCCACAGGATGGTTTTCACGCTGTTCAGTGCTGATCGATATCGCCAAATAATTGTGTCAACTCGCGGGAGAATTTCAGTACCAGATATTTTGCTGAGGCTAATGCACTTCGACCACCG
CTGTGTGCTGCTTTTCTGTACATCAAGTATGAAAATGAGGAGATTCAGCAGAGTGATGATAATGAAGCATCTACATCCAGCACTTTTCGGTCATATATCATCAACATCTTTTACTGTCGTTGAGTGCTGTTTGATATTGACATGTTCAATATATAGAGTCAATTTCCATTGTGTACACGCTACAGTACCATTTATCATAT
GCAATACAAGAGATAAC
>TRINITY_DN45135_c1_g3_i2 from sample A6 / Example unspliced isoform:CGAAATTGAAAGAAGCATCTTACGAGCACTTATTACAGGTCCTTTGAAGAGTAGGATAGGTAGGGCTACAGGGATCTCACATGTTGATATTTTTCCGCCTCCTTATTTTTTTCTGAAGACATTCCTCTTTCTCTCCGCGTTTGGTCCTCTGTTCGAAGCTGATCGTGTACCTTCCCAGGGTTCTGGAAACTACTTGTCAT
AATATCCTTCATAGGTTTGGTTTGTGGGTGAAGGACAGATGAAACCTCCTTGGAGAAGCTCCAGGGATACCTGTGCCAAAGCGATCTCTACCTCTCAGCATGGTCCGGCTTCTGTTCAAACAAATATGTATATCTGGCCCTAAAATAAAATTTTAGGGAATATTCACACGGCCTGCCATCCAAACACTGTAACAGAAATG
AATACACTGTAACACAAACACAGAGTTAAGAGGAGAATGTCTACGCGCAGGGAAAGGCAACAAACTTTATAAAGTAGTGGAATGGCGGTTTTGGTAGCAACGGCTACAATTTTGATTAGCTTTTTAGgtacccaccttccacttataaaactcgttgttgatgtcagagagtggttgtttttgtgatggtatgcagAGTA
TATTCTTTCACTGCCACCTTCAAATGAATTGATCTCCAGACGCAACAAACTAATATAATATATTTTTCGCGGGAGGCGCTTCAATGAGTTTTTGTGTGTATATGGAGCGCGATGGTAGCTTTTTAATTGAGATTAAGGATGAAACGTTAAGATGGGAAATCTAGTGGGAGAACGAAAGGTTGAAGCGATCAAATTCTTTC
GAGCCTGCCACGCAGGAGTCGGAACTATTTTAGATGCTCTGTTAACACCTTTGGTGTAAAGAAAACGGTGGAACGCGACGCCCGTGATAAGGGAAAGCTGAATTCGAACCTCCAAAGCTTGGCAGGTAAAGCTGAATTCGAACATCCACCTAGACATCTACATGTACAGACGATAAAGAAATCAGCTTAGGTGATGAACT
ATCACCTGTCAAAGTGCAAAGCCAACCCGTGTCTTTTTTCGTCTCTAATTATGACCCTGGTCCCGAGTTATCTGAAATCTTCAATAACCCGTCAATTCTAATGGTTTGCTGATGAGGGAGCTTTTTACCTATGAACCTCCTAGGCCGAGTTCCCACAGGATGGTTTTCACGCTGTTCAGTGCTGATCGATATCGCCAAAT
AATTGTGTCAACTCGCGGGAGAATTTCAGTACCAGATATTTTGCTGAGGCTAATGCACTTCGACCACCGCTGTGTGCTGCTTTTCTGTACATCAAGTATGAAAATGAGGAGATTCAGCAGAGTGATGATAATGAAGCATCTACATCCAGCACTTTTCGGTCATATATCATCAACATCTTTTACTGTCGTTGAGTGCTGTT
TGATATTGACATGTTCAATATATAGAGTCAATTTCCATTGTGTACACGCTACAGTACCATTTATCATATGCAATACAAGAGATAAC