NA ----> NA

Intron 1 GCCCTTGGCT ... GGTTTCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.56	2.7	3.3	1.3
A2	67.46	1.7	4.3	4
A3	64.33	6	10.7	7.7
A4	62.12	4.7	7	4
A5	84.85	1.7	4.3	1.3
A6	46.63	5.3	4.7	1.3
A7	74.79	4	9.7	4
A8	100	0	6.3	6.3
A9	41.11	7	5	1.3
A10	60.51	4.3	5.7	1

>TRINITY_DN45088_c0_g4_i5 from sample A6 / Example spliced isoform

CGACGCAAGCGCACTTCCCGAAACCGACAGGCCTCCTCTCATCGAAAGGCGCGAGATTTTTAAGAGCATAGCAATGAACGCCCTTTCCTTCCTTGCGGGAAGGGGCGTCGCCGGTCGGGACTGAGCAGATCGAGGGCCTAGGGTCGTAGGCCAATCATTTTCAGTGGGCATATTCCGGGGCAGGTGTGGATCCGTTCGGC
GTCAGCAGGCACTACGTCTGGGGTCCCTGTACTTGACCCCTCGTTATCCAGTTAAATGTTAGCAACCAGCAAGGTTTTTTATTCTTTTACCAAAAATTCTACAGGTACCTGGGCGCCAACTCATTTTAACCATTCAAAATACTCCAAACCCTAATTGCCTGTCTGCAGCTGTGGGATCCACCACAGACATAGCGCTCTGT
GGTTCCAACAATCACCGGCATTCTTCTGTTCAAAATAAGGATACAAAGCT

>TRINITY_DN45088_c0_g4_i4 from sample A6 / Example unspliced isoform:

CGACGCAAGCGCACTTCCCGAAACCGACAGGCCTCCTCTCATCGAAAGGCGCGAGATTTTTAAGAGCATAGCAATGAACGCCCTTTCCTTCCTTGCGGGAAGGGGCGTCGCCGGTCGGGACTGAGCAGATCGAGGGCCTAGGGTCGTAGGCCAATCATTTTCAGTGGGCATATTCCGGGGCAGGTGTGGATCCGTTCGGC
GTCAGCAGGCACTACGTCTGGGGTCCCTGTACTTGACCCCTCGTTATCCAGTTAAATGTTAGCAACCAGCAAGGTTTTTTATTCTTTTACCAAAAATTCTACAGGTACCTGGGCGCCAACTCATTTTAACCATTCAAAATACTCCAAACCCTAATTGCCTGTCTGCAGCTGTGGGATCCACCACAGgcccttggcttatc
gaccgagaaggcgataaatacgaacatatttctcttggtttcacagACATAGCGCTCTGTGGTTCCAACAATCACCGGCATTCTTCTGGTATGTTGCCGATTGCTCTTCATTTTGTTCAATTACCTTTTCTTAATGTTGTCCCTGTTCGCCTTTCTGGTTTCCTTTTTTGCCCTTTGGTGCGATCTCCGTAGAGAACTTT
GCATATCAAATGTTGTATCATATATCTCGGTATTTGTTTCAATTTTTATTTGCAAAGCTTTTAATAGCGTGAATTTGTTTCGATATTTACCAGATATCCCGGTATTGGCTTTTTTTTTTTGTATAATGTTATAAACTTTAATGTGGTGAATTTGTTTGCTAATTTCCCAGTTATACTCATACTCGTTTAAATTTTTATGT
CATGATCTTTAATATATTGATTATTTCCATGTTTCGTGGAAATTAGAATTTATTATCATGGTAAACATTTGG

Intron 2 GTGTGGATCC ... AATTCTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.1	6.3	31	16.3
A2	74.55	12.3	45	26.8
A3	71.31	17	48	36.5
A4	80.22	7.3	35	23.8
A5	84.47	5.5	33	26.8
A6	67.95	9.5	26	14.3
A7	73.11	17.3	56	37.8
A8	82.56	3.5	18	14.8
A9	76.1	13.3	46	38
A10	56.47	30.8	51	28.8

>TRINITY_DN45088_c0_g4_i2 from sample A6 / Example spliced isoform

CGACGCAAGCGCACTTCCCGAAACCGACAGGCCTCCTCTCATCGAAAGGCGCGAGATTTTTAAGAGCATAGCAATGAACGCCCTTTCCTTCCTTGCGGGAAGGGGCGTCGCCGGTCGGGACTCAGCGGATCGAGGGCCTAGGGTCGTAGGCCAATCATTTTCAGTGGGCATATTCCGGGGCAGGTACCTGGGCGCCAACT
CATTTTAACCATTCAAAATACTCCAAACCCTAATTGCCTGTCTGCAGCTGTGGGATCCACCACAGACATAGCGCTCTGTGGTTCCAACAATCACCGGCATTCTTCTG

>TRINITY_DN45088_c0_g4_i4 from sample A6 / Example unspliced isoform:

CGACGCAAGCGCACTTCCCGAAACCGACAGGCCTCCTCTCATCGAAAGGCGCGAGATTTTTAAGAGCATAGCAATGAACGCCCTTTCCTTCCTTGCGGGAAGGGGCGTCGCCGGTCGGGACTGAGCAGATCGAGGGCCTAGGGTCGTAGGCCAATCATTTTCAGTGGGCATATTCCGGGGCAGgtgtggatccgttcggc
gtcagcaggcactacgtctggggtccctgtacttgacccctcgttatccagttaaatgttagcaaccagcaaggttttttattcttttaccaaaaattctacagGTACCTGGGCGCCAACTCATTTTAACCATTCAAAATACTCCAAACCCTAATTGCCTGTCTGCAGCTGTGGGATCCACCACAGGCCCTTGGCTTATC
GACCGAGAAGGCGATAAATACGAACATATTTCTCTTGGTTTCACAGACATAGCGCTCTGTGGTTCCAACAATCACCGGCATTCTTCTGGTATGTTGCCGATTGCTCTTCATTTTGTTCAATTACCTTTTCTTAATGTTGTCCCTGTTCGCCTTTCTGGTTTCCTTTTTTGCCCTTTGGTGCGATCTCCGTAGAGAACTTT
GCATATCAAATGTTGTATCATATATCTCGGTATTTGTTTCAATTTTTATTTGCAAAGCTTTTAATAGCGTGAATTTGTTTCGATATTTACCAGATATCCCGGTATTGGCTTTTTTTTTTTGTATAATGTTATAAACTTTAATGTGGTGAATTTGTTTGCTAATTTCCCAGTTATACTCATACTCGTTTAAATTTTTATGT
CATGATCTTTAATATATTGATTATTTCCATGTTTCGTGGAAATTAGAATTTATTATCATGGTAAACATTTGG