NA ----> NA
Intron 1 GTAAGTAAGT ... AAACTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 6 | 6 |
| A2 | 38.89 | 11 | 11 | 3 |
| A3 | 100 | 0 | 6 | 2 |
| A4 | 81.82 | 1 | 4 | 5 |
| A5 | 80 | 1 | 4 | 4 |
| A6 | 66.67 | 3 | 6 | 6 |
| A7 | 70 | 3 | 4 | 10 |
| A8 | 53.33 | 7 | 7 | 9 |
| A9 | 25.93 | 10 | 5 | 2 |
| A10 | 44.68 | 13 | 11 | 10 |
>TRINITY_DN48630_c0_g1_i9 from sample A7 / Example spliced isoformATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCC
CAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTG
GTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTC
CTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCAC
ACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTG
AGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACTTGTGATGATTCA
>TRINITY_DN48630_c0_g1_i2 from sample A7 / Example unspliced isoform:ATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGgtaagtaagtggttaacaatttagtgtcatttgtaaattatttttccttactatacacatatatatatattgctaatatttttgatgattttaaaacttgtagTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTC
TATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATA
CAAAGGTAACTATTTCAACAATCACAATGCATAGTATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCATTTGGTGATTGCAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAGTGAGATGTTCATTAATGACCAAGTTTTTTTAT
TCAATTTATCCAAACATGTTTATCAATGTTGAATTGTTGAATTAATTGAGATATGATCTTTTATTTGCAGAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAA
AGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACT
TGTGATGATTCA
Intron 2 GTATGTATTT ... GTGATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 14 | 14 |
| A2 | 47.37 | 5 | 2 | 7 |
| A3 | 88.24 | 1 | 8 | 7 |
| A4 | 91.67 | 1 | 9 | 13 |
| A5 | 60 | 1 | 1 | 2 |
| A6 | 52.94 | 4 | 2 | 7 |
| A7 | 36 | 16 | 4 | 14 |
| A8 | 55.22 | 15 | 13 | 24 |
| A9 | 37.14 | 11 | 4 | 9 |
| A10 | 33.33 | 11 | 3 | 8 |
>TRINITY_DN102447_c1_g1_i1 from sample A2 / Example spliced isoformACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATAC
CTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACT
CGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGA
>TRINITY_DN102447_c1_g1_i2 from sample A2 / Example unspliced isoform:ACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGgtatgtatttcatcattgtcagtttgttaatacatggtatttcattgaccaatgcatttctaactacgtcagtattggtgattgtagCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGA
AAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTT
CTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATA
CATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGA
Intron 3 GTAACTATTT ... GTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.59 | 12.6 | 23 | 3.8 |
| A2 | 88.91 | 2 | 21 | 11.4 |
| A3 | 87.7 | 1.6 | 11 | 10 |
| A4 | 45.59 | 8.6 | 9 | 5.4 |
| A5 | 88.89 | 2 | 19 | 13 |
| A6 | 40.63 | 15.4 | 13 | 8 |
| A7 | 41.15 | 20 | 18 | 9.8 |
| A8 | 36.66 | 46.8 | 36 | 18.2 |
| A9 | 43.77 | 18.6 | 19 | 10 |
| A10 | 49.53 | 14 | 16 | 11.2 |
>TRINITY_DN48630_c0_g1_i18 from sample A7 / Example spliced isoformATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATATATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTC
TATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATA
CAAAGCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTAAATCCATGGTTCTAACCGCGTCTCCTCTTGCGAGCACAACTGTAGAGATGCCTTCCATGAGCACACCACTCACATCTATACCCCACGAGGACTTGGCTTCTGAGATGCCGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCAGGGAAAAACAACCAA
AAGATTGATTTTTGGTGTTGCATAGTCTTGTATATATGTATTTTGACAT
>TRINITY_DN48630_c0_g1_i10 from sample A7 / Example unspliced isoform:ATTTCATTGACCAATGCATTTCTAACTACGTCAGTATTGGTGATTGTAGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTC
ACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGgtaactatttcaacaatcacaatgcatagtatttaaccatgttactatattgtttattcatgcatgtataactatttccccatttggtgattgcagCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTAAATCC
ATGGTTCTAACCGCGTCTCCTCTTGCGAGCACAACTGTAGAGATGCCTTCCATGAGCACACCACTCACATCTATACCCCACGAGGACTTGGCTTCTGAGATGCCGAGCGATCCCAGGGAGATGGTCGATA
Intron 4 GTGACTATTT ... TAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.52 | 5 | 7 | 12 |
| A2 | 100 | 0 | 6 | 4 |
| A3 | 69.23 | 4 | 8 | 10 |
| A4 | 100 | 0 | 1 | 4 |
| A5 | 42.86 | 2 | 1 | 2 |
| A6 | 26.32 | 7 | 2 | 3 |
| A7 | 18.03 | 25 | 6 | 5 |
| A8 | 26.83 | 30 | 10 | 12 |
| A9 | 21.43 | 22 | 9 | 3 |
| A10 | 58.33 | 5 | 7 | 7 |
>TRINITY_DN48630_c0_g1_i9 from sample A7 / Example spliced isoformATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCC
CAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTG
GTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTC
CTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCAC
ACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTG
AGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACTTGTGATGATTCA
>TRINITY_DN48630_c0_g1_i5 from sample A7 / Example unspliced isoform:ATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATATATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGgtgactatttcaacatgacattattttaatacatgttagtttcttatcacatgttacttaattaatgctacacgatctaatatttacaattttctaaattgtagGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTC
CCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGT
GGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGGTAACTATTTCAACAATCACAATGCATAGTATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCATTTGGTGAT
TGCAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAGTGAGATGTTCATTAATGACCAAGTTTTTTTATTCAATTTATCCAAACATGTTTATCAATGTTGAATTGTTGAATTAATTGAGATATGATCTTTTATTTGCAGAGCACAACTATAGAGAGGCCTTCCAT
GAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGC
CATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACTTGTGATGATTCA
Intron 5 GTGAGATGTT ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.76 | 8 | 11 | 10 |
| A2 | 72.97 | 5 | 17 | 10 |
| A3 | 73.91 | 3 | 11 | 6 |
| A4 | 38.46 | 8 | 5 | 5 |
| A5 | 71.43 | 1 | 2 | 3 |
| A6 | 24.78 | 22 | 3.5 | 11 |
| A7 | 30.77 | 18 | 5 | 11 |
| A8 | 46.88 | 34 | 24 | 36 |
| A9 | 28.57 | 30 | 10 | 14 |
| A10 | 50 | 15 | 13 | 17 |
>TRINITY_DN48630_c0_g1_i9 from sample A7 / Example spliced isoformATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCC
CAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTG
GTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTC
CTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCAC
ACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTG
AGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACTTGTGATGATTCA
>TRINITY_DN48630_c0_g1_i5 from sample A7 / Example unspliced isoform:ATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGC
ACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATATATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTGACTATTTCAACATGACATTATTTTAATACATGTTAGTTTCTTATCACATGTTACTTAATTAATGCTACACGATCTAATATTTACAATTTTCTAAATTGTAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTC
CCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGT
GGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGGTAACTATTTCAACAATCACAATGCATAGTATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCATTTGGTGAT
TGCAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAgtgagatgttcattaatgaccaagtttttttattcaatttatccaaacatgtttatcaatgttgaattgttgaattaattgagatatgatcttttatttgcagAGCACAACTATAGAGAGGCCTTCCAT
GAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGC
CATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCAACTTGTACTTGTGATGATTCA
Intron 6 GTAACTATTT ... AAACTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.75 | 10 | 6 | 5.2 |
| A2 | 100 | 0 | 1 | 3 |
| A3 | 55.56 | 2 | 0 | 5 |
| A4 | 100 | 0 | 6 | 4.6 |
| A5 | 25.33 | 2 | 0 | 1.4 |
| A6 | 16.67 | 5 | 1 | 1 |
| A7 | 29.75 | 17 | 8 | 6.4 |
| A8 | 30.44 | 17 | 10 | 5 |
| A9 | 17.47 | 24 | 7 | 3.2 |
| A10 | 39.88 | 11 | 8 | 6.6 |
>TRINITY_DN46751_c1_g1_i6 from sample A8 / Example spliced isoformCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAAC
CAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGC
TCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCAT
CTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGGTATGTATTTCATCATTGTCAGTTTGTTAATACATGGTATTTCATTGACCAATGCATTTCTAACTACGTCAGTATTGGTGATTGTAGCCACTAGCC
TCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCA
TACAAAGGTAACTATTTCAACAATCACAATGCATAATATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCACTTGGTGATTGTATTCATTAGCTGCAGAAGTTCCCAACCCCTCTTCTCAATCCATGGTTCTGACCGGGTCTCCTCTTGTGGTGAGATGTTCATTAATGACCAAGTTTTTTT
ATTCAATTTACCCAAACATGTTGATCAATGTTGA
>TRINITY_DN46751_c1_g1_i12 from sample A8 / Example unspliced isoform:CACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAAC
CAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGC
TCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGgtaactatttaaacatgacattattttaatacatgaatacatccaattaacaatttagtgtcatttgtaaattatttttccttactatgtacacatatatagattgataatatttttaatgatttgaaaactt
gtagTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTGACTATTTCAACATGAC
Intron 7 GTTCTGACTG ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.84 | 7 | 7 | 10 |
| A2 | 72.73 | 3 | 8 | 8 |
| A3 | 80 | 1 | 3 | 5 |
| A4 | 5.88 | 8 | 0 | 1 |
| A5 | 66.67 | 1 | 4 | 0 |
| A6 | 24.14 | 11 | 6 | 1 |
| A7 | 21.05 | 15 | 8 | 0 |
| A8 | 38.1 | 39 | 31 | 17 |
| A9 | 17.81 | 30 | 12 | 1 |
| A10 | 30.77 | 9 | 5 | 3 |
>TRINITY_DN48063_c1_g2_i7 from sample A10 / Example spliced isoformAAGGGAAATGCCTCTATATTTTTTGAAAAAGATGTACGCAGAATTTGTTATGGGGAAGCATGTTAACTATTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTG
CACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGA
GAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCA
TGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACAT
CTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGT
CCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGCGGCAGAAGTGCCCTGCCCCTCTACTCA
ATCCATGAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATT
GTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCAT
>TRINITY_DN48063_c1_g2_i8 from sample A10 / Example unspliced isoform:AAGGGAAATGCCTCTATATTTTTTGAAAAAGATGTACGCAGAATTTGTTATGGGGAAGCATGTTAACTATTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTG
CACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGA
GAAGCATCTTATAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATAT
ATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTA
ACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGAT
ACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGCAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATAC
CTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGgttctgactgggtctcctcttctagtgagatgttcattaatgaccaagtttttttattcaatttatccaaacatgtttatcaatgttgaa
ttgttgaattaattgagatatgatcttttatttgcagAGCACAACTATAGAGAGGCCTT