NA ----> NA
Intron 1 GTACTTTCTT ... TTGTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 8 | 13 | 7 |
| A2 | 52.94 | 8 | 14 | 4 |
| A3 | 60 | 5 | 6 | 9 |
| A4 | 64.29 | 5 | 11 | 7 |
| A5 | 55.56 | 8 | 18 | 2 |
| A6 | 6 | 47 | 1 | 5 |
| A7 | 11.48 | 27 | 2 | 5 |
| A8 | 12.12 | 58 | 3 | 13 |
| A9 | 4.23 | 34 | 2 | 1 |
| A10 | 3.7 | 26 | 0 | 2 |
>TRINITY_DN113623_c9_g8_i4 from sample A1 / Example spliced isoformGCATTGAGGTCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCTATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATTATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTC
CCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACCGCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATG
AAGTCCTATTCGTGGGTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGTGTTTCATGAACTGTTCAATCTGAGCAATTATATGAAATACTATTCTGCAAATGATGATATCAATTTAATTTTATAGATGTCACAAAATTCAGTGGATTA
TTTCTTCCATCGGTCAACGAGGTCTCTTATAGATGGTGTTCAGACATCTAATTACCAGTTAAAGGGAGCTAGGGCTTTTTCTGATTTTTTTTGTAGTCATTTATGTGCAAAACAATACTCATGCGGTAATGTGTCAAGAGGAGAATTCTCCTCAAGGCTGTAACTGTTTCTGATAAATCTGTGGGTCAATGCCTCAACAC
CTTTAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATAATGAAGTTTCACCTTCAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATAATGAAGTTTAAATATCATTTTGTTTTCAAGAAATGGTTTATAAATTTCGATTTCTGTCACCACATCCATGGACGACACTT
GCACTTGGAAATATGTGCAGGAAAATTTCAGCAACGTAGGAAGTCTTGCCCATGGATTTGCTTAGTGAGGAAAATTGATTAGTCCATCTGTCACCTCATGAGATGCGGCAATTTCTTTCCCTGTATTGAGTAAATTTCCTTGATGAAATTGTGAATATTCATTGAATTCCATAATACCAACTTTACTTTGATATAGACAA
AGTAATTGTCAAATTTTGTATTGATATTCTCCTTTTGATTAGAATTTCAGTAAGTTCATTATCTGACGTATTTGTTTCTTCCGCTCTCCCAGAAGAAATATCTATTTGCCCTTTCTGAGCTTTTATGAATTTTTATTGTCTCTATCCATCTTATCAAATACATTCCTTCCTAGAATTGCAATGTACAGAAACATAGATTC
TACCTTTGAACCTGACAATGCCATCGTCCACTTAAAGCTTTGAGAAATTACCTTTGTTGAAATGTTGCGAAAATTGCTGTCTGCCGCCATTCTGGTTATAATCATCCCTTAGTATCTCAACGGATTTGTTCAAGTTTGTGTGATCCTTTAACCATATGACAGTTTATCTTATTTCTTTTTCCAGGTTGCAACACCGAGGG
AAAACCCCCAAGTACATCCCCTCATTTTGAGGATGTTATCTAGGGTAAACTTTAGATTATTCAGGGCACAAGGCCAGTTCAACAACAAGGTTTGAAGCCGTGACAACAATATACGCATTATGAGCTCAACATGTCACTTATGGGAATAGAAC
>TRINITY_DN113623_c9_g8_i5 from sample A1 / Example unspliced isoform:GCATTGAGGTCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCTATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATTATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTC
CCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACCGCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATG
AAGTCCTATTCGTGGGTACCCTTTGAATTCCTTCTCGTTTTCTTTGGTTCATATCTTTTTATCTTTATTTCAATGAGAAACATATCCCAAGGTGGGGCTGCACTGAGTAACATGGACTTCTTTCGGTATAAGTTTCAGGTTCGAAAGGTATCTATTCTGTCAAATTTTCCCGGACTGGGACTTGCACTTGCCCTCTTTTT
TATTACATGCCATTTGGATTGAGTTTATCAGAGTGGAATCTGATAAACGGCTTAATATTCTGTCAACCTCACCCTTGAACTAAGGCACCACTGGCTTACTGTACATTCATTATTTATACTTATCATCAAAATCAAACAAAACAATCTCCTCCTGTATTTAGGGCATCCGGTGTGAATCATGATTTTGTGGGAAATATGTC
AAGGGGATTCTTGATGTTAATTTGGAAGGAGGATTGCAGGGAGGAGCATCTCAGAGTATGTTGTGCACTTTCTGTTGGCAGGTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGgtactttcttcgctgccctctttgtcatggcttt
ggaatctagatatttacaactaaaaatttgtcattaatttcagcaatactttgattcttagaagaatttacaagatggtaaacatcacattaacagagtttaaaatctacattgaagcatctattatttccccataaactaaatgttttccgaagatctaattattaattttcttttgtattcagTGTTTCATGAACTGT
TCAATCTGAGCAATTATATGAAATACTATTCTGCAAATGATGATATCAATTTAATTTTATAGATGTCACAAAATTCAGTGGATTATTTCTTCCATCGGTCAACGAGGTCTCTTATAGATGGTGTTCAGACATCTAATTACCAGTTAAAGGGAGCTAGGGCTTTTTCTGATTTTTTTTGTAGTCATTTATGTGCAAAACAA
TACTCATGCGGTAATGTGTCAAGAGGAGAATTCTCCTCAAGGCTGTAACTGTTTCTGATAAATCTGTGGGTCAATGCCTCAACACCTTTAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATAATGAAGTTTCACCTTCAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGA
AAATAATGAAGTTTAAATATCATTTTGTTTTCAAGAAATGGTTTATAAATTTCGATTTCTGTCACCACATCCATGGACGACACTTGCACTTGGAAATATGTGCAGGAAAATTTCAGCAACGTAGGAAGTCTTGCCCATGGATTTGCTTAGTGAGGAAAATTGATTAGTCCATCTGTCACCTCATGAGATGCGGCAATTTC
TTTCCCTGTATTGAGTAAATTTCCTTGATGAAATTGTGAATATTCATTGAATTCCATAATACCAACTTTACTTTGATATAGACAAAGTAATTGTCAAATTTTGTATTGATATTCTCCTTTTGATTAGAATTTCAGTAAGTTCATTATCTGACGTATTTGTTTCTTCCGCTCTCCCAGAAGAAATATCTATTTGCCCTTTC
TGAGCTTTTATGAATTTTTATTGTCTCTATCCATCTTATCAAATACATTCCTTCCTAGAATTGCAATGTACAGAAACATAGATTCTACCTTTGAACCTGACAATGCCATCGTCCACTTAAAGCTTTGAGAAATTACCTTTGTTGAAATGTTGCGAAAATTGCTGTCTGCCGCCATTCTGGTTATAATCATCCCTTAGTAT
CTCAACGGATTTGTTCAAGTTTGTGTGATCCTTTAACCATATGACAGTTTATCTTATTTCTTTTTCCAGGTTGCAACACCGAGGGAAAACCCCCAAGTACATCCCCTCATTTTGAGGATGTTATCTAGGGTAAACTTTAGATTATTCAGGGCACAAGGCCAGTTCAACAACAAGGTTTGAAGCCGTGACAACAATATACG
CATTATGAGCTCAACATGTCACTTATGGGAATAGAAC
Intron 2 GTTCGAAAGG ... CTGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.66 | 15.5 | 4 | 8 |
| A2 | 35.76 | 18 | 6 | 14 |
| A3 | 48.59 | 8 | 4 | 11 |
| A4 | 22.42 | 9 | 1 | 4 |
| A5 | 26.51 | 19 | 4 | 9 |
| A6 | 4.31 | 111.5 | 8 | 2 |
| A7 | 9.56 | 101.5 | 15 | 6 |
| A8 | 11.8 | 96.5 | 14 | 11 |
| A9 | 11.37 | 75 | 13 | 6 |
| A10 | 6.36 | 91 | 8 | 4 |
>TRINITY_DN43493_c0_g1_i6 from sample A7 / Example spliced isoformATGATATGCCCCTTTCGCATGATCAAACTATTATTTCAGTTGTTTTTACCAAATGAATAGGCATTGAGGCCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCGATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATT
ATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTCCCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACC
GCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATGAAGTCCTATTCGTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGTGTTTCATGAACTGTTCAATCTGAGCAATTATATGAAATACTAT
TCTGCAAATGATGATATCAATTTAATTTTATAGATGTCACAAAATTCAGTGGATTATTTCTTCCATCGGTCAACGAGGTCTCTTATAGATGGTGTTCAGACATCTAATTACCAGTTAAAGGGAGCTAGGGCTTTTTCTGATTTTTTTTGTAGTCATTTATGTGCAAAACAATACTCATGCGGTAATGTGTCAAGAGGAGA
ATTCTCCTCAAGGCTGTAACTGTTTCTGATAAATCTGTGGGTCAATGCCTCAACACCTTTAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATAATGAAGTTTCACCTTCAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATA
>TRINITY_DN43493_c0_g1_i5 from sample A7 / Example unspliced isoform:ATGATATGCCCCTTTCGCATGATCAAACTATTATTTCAGTTGTTTTTACCAAATGAATAGGCATTGAGGCCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCGATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATT
ATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTCCCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACC
GCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATGAAGTCCTATTCgttcgaaagggcatccggtgtgaatcatgattttgtgggaaatatgtcaaggggattcttgatgttaatttggaaggaggattgcagggaggagcatctcagagtatgttgtgcactttctgttggcag
GTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGT
Intron 3 GTACCCTTTG ... CTGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.87 | 16 | 6 | 9 |
| A2 | 36.89 | 18 | 5 | 16 |
| A3 | 48.41 | 7 | 1 | 12 |
| A4 | 28.73 | 9 | 3 | 4 |
| A5 | 32.09 | 24 | 6 | 16 |
| A6 | 5.16 | 111 | 10 | 2 |
| A7 | 9.1 | 97.5 | 13 | 6 |
| A8 | 11.42 | 92.5 | 12 | 11 |
| A9 | 12.03 | 71 | 13 | 6 |
| A10 | 5.44 | 89.5 | 6 | 4 |
>TRINITY_DN113623_c9_g8_i2 from sample A1 / Example spliced isoformGCATTGAGGTCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCTATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATTATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTC
CCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACCGCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATG
AAGTCCTATTCGTGGGTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGTCTAAAAAGTCGATACGAAGGCTTCGACAACCTGCTATTGTCACTCCGGCCTATGCAAAAATAATGAAGAGGCTGAACTTTCTTGGTTAATATGCCATAA
GAAATGCTGGCCTAAACATGGAGTTGCAATGAGTTCTATGTAGCTCAGGTAGTTGCCATTGAAGTTTGAACTGCAACAGAATTTGGTACAAGCAGAAGCTGAACAAATTTGAATTGGTCACTTTCTCGAGGGATTATTCTACTCGCAAGAGGATTTGCAGGATTCTATTCTTATAACAAAGATGAAAACATCCAATTCAC
TAAAGGAAATATTTCAGCTGTGATTTTTTTTGAAAATCTTTGGATGAGTTTGTTTTGAGCATTATCTGATATGCAGCCGAATGACTTTTCAAGTATCTCTTCAATTAATATAAAATACCATGACACAACC
>TRINITY_DN113623_c9_g8_i5 from sample A1 / Example unspliced isoform:GCATTGAGGTCCGCTTCATTACAGTTACTTCAATCTGCTCTGAGTGCATGATCTATCGCAAACAAAACGGAAAACAAAAACAATGCAAAGGGCATGTCGCCTGCGATGTGCAGGCTTATCCCAGCTGCTTCATGGCCATTATTCCACACCTAATGTCCCACAATCCAGTTCCCCGTCACTCCATTATCCCACCTCCATTC
CCACTTACAAATTTGAGAGATCGATTCACATCATCCCATCATCAATTGCATCATTAAGATCAGAAACTCAATGGCACCACATGCTGCCCATTGCGTCACTTTGTCATCCCCTCCTGATGATCCAGAAGCGGACAAAAACCGCGAAGAAAGTGGTGAAGAGACTGAGCGCTCCGCCCTCCAAGCTAAAGAAGACCAAGATG
AAGTCCTATTCGTGGgtaccctttgaattccttctcgttttctttggttcatatctttttatctttatttcaatgagaaacatatcccaaggtggggctgcactgagtaacatggacttctttcggtataagtttcaggttcgaaaggtatctattctgtcaaattttcccggactgggacttgcacttgccctcttttt
tattacatgccatttggattgagtttatcagagtggaatctgataaacggcttaatattctgtcaacctcacccttgaactaaggcaccactggcttactgtacattcattatttatacttatcatcaaaatcaaacaaaacaatctcctcctgtatttagggcatccggtgtgaatcatgattttgtgggaaatatgtc
aaggggattcttgatgttaatttggaaggaggattgcagggaggagcatctcagagtatgttgtgcactttctgttggcagGTCATACAAATTCAGGTTTAGGACTCTTACCAGTGGTCTAATCAAGCGTTGGAGAGCTGGAAAACGACACAATGCCCATTCCAAGGTACTTTCTTCGCTGCCCTCTTTGTCATGGCTTT
GGAATCTAGATATTTACAACTAAAAATTTGTCATTAATTTCAGCAATACTTTGATTCTTAGAAGAATTTACAAGATGGTAAACATCACATTAACAGAGTTTAAAATCTACATTGAAGCATCTATTATTTCCCCATAAACTAAATGTTTTCCGAAGATCTAATTATTAATTTTCTTTTGTATTCAGTGTTTCATGAACTGT
TCAATCTGAGCAATTATATGAAATACTATTCTGCAAATGATGATATCAATTTAATTTTATAGATGTCACAAAATTCAGTGGATTATTTCTTCCATCGGTCAACGAGGTCTCTTATAGATGGTGTTCAGACATCTAATTACCAGTTAAAGGGAGCTAGGGCTTTTTCTGATTTTTTTTGTAGTCATTTATGTGCAAAACAA
TACTCATGCGGTAATGTGTCAAGAGGAGAATTCTCCTCAAGGCTGTAACTGTTTCTGATAAATCTGTGGGTCAATGCCTCAACACCTTTAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGAAAATAATGAAGTTTCACCTTCAGACTTTTAAGTTTTTGTTACTTCTACTAGATTTTATTTCAAGGA
AAATAATGAAGTTTAAATATCATTTTGTTTTCAAGAAATGGTTTATAAATTTCGATTTCTGTCACCACATCCATGGACGACACTTGCACTTGGAAATATGTGCAGGAAAATTTCAGCAACGTAGGAAGTCTTGCCCATGGATTTGCTTAGTGAGGAAAATTGATTAGTCCATCTGTCACCTCATGAGATGCGGCAATTTC
TTTCCCTGTATTGAGTAAATTTCCTTGATGAAATTGTGAATATTCATTGAATTCCATAATACCAACTTTACTTTGATATAGACAAAGTAATTGTCAAATTTTGTATTGATATTCTCCTTTTGATTAGAATTTCAGTAAGTTCATTATCTGACGTATTTGTTTCTTCCGCTCTCCCAGAAGAAATATCTATTTGCCCTTTC
TGAGCTTTTATGAATTTTTATTGTCTCTATCCATCTTATCAAATACATTCCTTCCTAGAATTGCAATGTACAGAAACATAGATTCTACCTTTGAACCTGACAATGCCATCGTCCACTTAAAGCTTTGAGAAATTACCTTTGTTGAAATGTTGCGAAAATTGCTGTCTGCCGCCATTCTGGTTATAATCATCCCTTAGTAT
CTCAACGGATTTGTTCAAGTTTGTGTGATCCTTTAACCATATGACAGTTTATCTTATTTCTTTTTCCAGGTTGCAACACCGAGGGAAAACCCCCAAGTACATCCCCTCATTTTGAGGATGTTATCTAGGGTAAACTTTAGATTATTCAGGGCACAAGGCCAGTTCAACAACAAGGTTTGAAGCCGTGACAACAATATACG
CATTATGAGCTCAACATGTCACTTATGGGAATAGAAC