sp|Q0INM3|BGA15_ORYSJ ----> Beta-galactosidase 15
Intron 1 GTAATTGTTA ... CCCTAATCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.35 | 7 | 3.7 | 4 |
| A2 | 33.33 | 1 | 1 | 0 |
| A3 | 25 | 6 | 2 | 2 |
| A4 | 0 | 2 | 0 | 0 |
| A5 | 20 | 2 | 1 | 0 |
| A6 | 50 | 1 | 0 | 2 |
| A7 | 23.08 | 5 | 1 | 2 |
| A8 | 36.36 | 7 | 6 | 2 |
| A9 | 27.27 | 4 | 1 | 2 |
| A10 | 33.33 | 3 | 2 | 1 |
>TRINITY_DN41768_c0_g1_i1 from sample A7 / Example spliced isoformCAATTTCCATCACACACAAATGATTTACATTTTTCATGGTTTGAACCTAGGGTGTTTACAGACCCGGGTCATTCCAATTACTAAGCCTATAGTAGCATAGGTAAATTTGTACTAGTTATAATGACAGACAGATCTTTGTTGATCATATTATTGGTCGATCATGTAGACAGTGTTTAACGCACCTGAAGGCACCAATTCAA
TGGATTTGGACCTAATAACCATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGTTATTTTGTAACATTGAAGGCTCGCACCGATGGGTGCTCTGTTGAATGTGATTACAGAGGGACTTATTATTCATCCAAATGTGACACTAACTGCGGACAAACCACTCAAAAATGGTACCATGTTCCTCGCTCATGG
TTGCACCCAACAAAGAACGTATTAGTTCTGCTCGACGAAGTAGGCGGTGATCCTTCTGGATTTTCACTCGAAACAAGACACGTTGACACCGTCTGCAACCATATGTCTCAAGATTATCCCACCCGAAACAAATTGACATTGCCAGTGCTTCGGCTGCGATGTTCTTTCGCTCTCCCATCAAATATAGCGGCGGGATGGTG
GTTCTCTACAATTCAATGGAGGTTTGAGACCTACATTCCCGTAGCGGCGAGGTTTCCAGCTTCGAATGTGGAGGCTCTATAGCCCCTTCAGAACCGACGGTGGATGTGAAAGAGTTTGTGGAAATTTTAGTTTTCCAGTTCGAGCCAGAGCAGAGGGTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATG
GTGGGCAGTTTTAAAATACTCTTTGGATATCTTGGAAAATGTGATGCGAACTTGAAAACCTGGTTTGTGCTGCCATAGGAACATGGATAGCGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCAGAGTGAAACCCTATGGAGAAGATACCCTTGGGAAGAATGAACTTACACAACATGCGAGAACTTGCGAAGAG
ACGTGGTAAGGTATGCGAATCTTTAGGAAGCAGTGGAGCGGCCCTGTCCTGGCGACATCGAACCCTTGGTGTGCTTCTTGTTGCAGCTCCGGTAGCAGTGGCTCGTAGAGACACTGTCCCACCCATGCAAAGGTGCTGGAGTCTTTTCTTCCCTTGCGATTTGGCGTAGTTAGTATGTTTTTTGAAGACCTACAATTCCT
TCTGGTTGGTGGCATTATTTGCTTAGGCCTACAGAAGGTTACTTTCTAGCGGCGGCGAGCGGCGTTTGTGTTTACTGTCTTTTCTTCAGCTCTTTATGAGCTGGTTTTTCATCTGTATATGAGCCAAAAGTGTTTTTTCATTTGTATATGATCCAATTTTGGATGCCCTGAAATAGGGTGCATTAGATGTAGTCATTGTT
TCTGGTGGTG
>TRINITY_DN41768_c0_g1_i3 from sample A7 / Example unspliced isoform:CAATTTCCATCACACACAAATGATTTACATTTTTCATGGTTTGAACCTAGGGTGTTTACAGACCCGGGTCATTCCAATTACTAAGCCTATAGTAGCATAGGTAAATTTGTACTAGTTATAATGACAGACAGATCTTTGTTGATCATATTATTGGTCGATCATGTAGACAGTGTTTAACGCACCTGAAGGCACCAATTCAA
TGGATTTGGACCTAATAACCATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGTTATTTTGTAACATTGAAGGCTCGCACCGATGGGTGCTCTGTTGAATGTGATTACAGAGGGACTTATTATTCATCCAAATGTGACACTAACTGCGGACAAACCACTCAAAAATGgtaattgttacttagaaaactc
aatataactatttacccaaatgcctggcttgtctatgatcttcagtttcttagtttctttgttgatattatacataataacccccctaatcagGTACCATGTTCCTCGCTCATGGTTGCACCCAACAAAGAACGTATTAGTTCTGCTCGACGAAGTAGGCGGTGATCCTTCTGGATTTTCACTCGAAACAAGACACGTTG
ACACCGTCTGCAACCATATGTCTCAAGATTATCCCACCCGAAACAAATTGACATTGCCAGTGCTTCGGCTGCGATGTTCTTTCGCTCTCCCATCAAATATAGCGGCGGGATGGTGGTTCTCTACAATTCAATGGAGGTTTGAGACCTACATTCCCGTAGCGGCGAGGTTTCCAGCTTCGAATGTGGAGGCTCTATAGCCC
CTTCAGAACCGACGGTGGATGTGAAAGAGTTTGTGGAAATTTTAGTTTTCCAGTTCGAGCCAGAGCAGAGGGTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATGGTGGGCAGTTTTAAAATACTCTTTGGATATCTTGGAAAATGTGATGCGAACTTGAAAACCTGGTTTGTGCTGCCATAGGAACATG
GATAGCGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCAGAGTGAAACCCTATGGAGAAGATACCCTTGGGAAGAATGAACTTACACAACATGCGAGAACTTGCGAAGAGACGTGGTAAGGTATGCGAATCTTTAGGAAGCAGTGGAGCGGCCCTGTCCTGGCGACATCGAACCCTTGGTGTGCTTCTTGTTGCA
GCTCCGGTAGCAGTGGCTCGTAGAGACACTGTCCCACCCATGCAAAGGTGCTGGAGTCTTTTCTTCCCTTGCGATTTGGCGTAGTTAGTATGTTTTTTGAAGACCTACAATTCCTTCTGGTTGGTGGCATTATTTGCTTAGGCCTACAGAAGGTTACTTTCTAGCGGCGGCGAGCGGCGTTTGTGTTTACTGTCTTTTCT
TCAGCTCTTTATGAGCTGGTTTTTCATCTGTATATGAGCCAAAAGTGTTTTTTCATTTGTATATGATCCAATTTTGGATGCCCTGAAATAGGGTGCATTAGATGTAGTCATTGTTTCTGGTGGTG
Intron 2 GTAATTAATG ... GATCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.73 | 13 | 3 | 8 |
| A2 | 50 | 1 | 1 | 1 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | 17.65 | 7 | 0 | 3 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 27.27 | 4 | 0 | 3 |
| A7 | 28.57 | 5 | 0 | 4 |
| A8 | 33.33 | 10 | 5 | 5 |
| A9 | 0 | 1 | 0 | 0 |
| A10 | 100 | 0 | 6 | 1 |
>TRINITY_DN39589_c0_g1_i4 from sample A8 / Example spliced isoformGTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATGGTGGGCAGCTTTAAAACACTCTTTGAATATCTTGGAAACGGTGATGCAAGCTTGAAAACCTAGTTTGTGCTGCCATAAGAACATGGATGGTGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCGGAGTGAAACCCTATGGAGAATATACCC
TTGGGAAGAATGAACTTACACAACATGTGAGCACTTGCGAAAAGACATGGTAAGGCATGCGAATCTTTATGAAGCAGTGGAGCGGCCCTGTCCTGCCGACATCGGACCCTTGGTGTGCTTCTTGTTGTGGCCATGTCCTGGCGACATCGGACCCTTGGCCTATCCATGTCCCTTTTCATCACAAATCGGTCTAAAGGGAG
AACACTTACAACTAACTATATTCGAATACTAGAGCCAAACAAGTTGAATGGATTTTATGACTAGAACCTCCCAAACAAGCTGCTCTCGTCTGGTACAAGACAGTGTTTAACGCACCTGAAGGCACCAATTCAATGGATTTGGACCTAATAACCATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGTTA
TTTTGTAACATTGAAGGCTCGCACCGATGGGTGCTCTGTTGAATGTGATTACAGAGGGACTTATTATTCATCCAAATGTGACACTAACTGCGGACAAACCACTCAAAAATGGTACCATGTTCCTCGCTCATGGTTGCACCCAACAAAGAACGTATTAGTTCTGCTCGACGAAGTAGGCGGTGATCCTTCTGGATTTTCAC
TCGAAACAAGACACGTTGACACCGTCTGCAACCATATGTCTCAAGATTATCCCACCCGAAACAAATTGACATTGCCAGTGCTTCGGCTGCGATGTTCTTTCGCTCTCCCATCAAATATAGCGGCGGGATGGTGGTTCTCTACAATTCAATGGAGGTTTGAGACCTACATTCCCGTAGCGGCGAGGTTTCCAGCTTCGAAT
GTGGAGGCTCTATAGCCCCTTCAGAACCGACGGTGGATGTGAAAGAGTTTGTGGAAATTTTAGTTTTCCAGTTCGAGCCAGAGCAGAGGGTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATGGTGGGCAGTTTTAAAATACTCTTTGGATATCTTGGAAAATGTGATGCGAACTTGAAAACCTGGTTTG
TGCTGCCATAGGAACATGGATAGCGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCAGAGTGAAACCCTATGGAGAAGATACCCTTGGGAAGAATGAACTTACACAACATGCGAGAACTTGCGAAGAGACGTGGTAAGGTATGCGAATCTTTAGGAAGCAGTGGAGCGGCCCTGTCCTGGCGACATCGAACCCTT
GGTGTGCTTCTTGTTGCAGCTCCGGTAGCAGTGGCTCGTAGAGACACTGTCCCACCCATGCAAAGGTGCTGGAGTCTTTTCTTCCCTTGCGATTTGGCGTAGTTAGTATGTTTTTTGAAGACCTACAATTCCTTCTGGTTGGTGGCATTATTTGCTTAGGCCTACAGAAGGTTACTTTCTAGCGGCGGCGAGCGGCGTTT
GTGTTTACTGTCTTTTCTTCAGCTCTTTATGAGCTGGTTTTTCATCTGTATATGAGCCAAAAGTGTTTTTTCATTTGTATATGATCCAATTTTGGATGCCCTGAAATAGGGTGCATTAGATGTAGTCATTGTTTCTGGTGGTGCTTAGGTACCTACAAATTTTTTGTAATATGTACTTTGTTTTTAC
>TRINITY_DN39589_c0_g1_i1 from sample A8 / Example unspliced isoform:GTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATGGTGGGCAGCTTTAAAACACTCTTTGAATATCTTGGAAACGGTGATGCAAGCTTGAAAACCTAGTTTGTGCTGCCATAAGAACATGGATGGTGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCGGAGTGAAACCCTATGGAGAATATACCC
TTGGGAAGAATGAACTTACACAACATGTGAGCACTTGCGAAAAGACATGGTAAGGCATGCGAATCTTTATGAAGCAGTGGAGCGGCCCTGTCCTGCCGACATCGGACCCTTGGTGTGCTTCTTGTTGTGGCCATGTCCTGGCGACATCGGACCCTTGGCCTATCCATGTCCCTTTTCATCACAAATCGGTCTAAAGGGAG
AACACTTACAACTAACTATATTCGAATACTAGAGCCAAACAAGTTGAATGGATTTTATGACTAGAACCTCCCAAACAAGCTGCTCTCGTCTGGTACAAGgtaattaatgtatttgattctcctatagaatgacactcttctttcatttggttcactatatcctaggtggggggagatcaaacaatttccatcacacacaa
atgatttacatttttcatggtttgaacctagggtgtttacagacccgggtcattccaattactaagcctatagtagcataggtaaatttgtactagttataatgacagacagatctttgttgatcatattattggtcgatcatgtagACAGTGTTTAACGCACCTGAAGGCACCAATTCAATGGATTTGGACCTAATAAC
CATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGTTATTTTGTAACATTGAAGGCTCGCACCGATGGGTGCTCTGTTGAATGTGATTACAGAGGGACTTATTATTCATCCAAATGTGACACTAACTGCGGACAAACCACTCAAAAATGGTACCATGTTCCTCGCTCATGGTTGCACCCAACAAAGAACG
TATTAGTTCTGCTCGACGAAGTAGGCGGTGATCCTTCTGGATTTTCACTCGAAACAAGACACGTTGACACCGTCTGCAACCATATGTCTCAAGATTATCCCACCCGAAACAAATTGACATTGCCAGTGCTTCGGCTGCGATGTTCTTTCGCTCTCCCATCAAATATAGCGGCGGGATGGTGGTTCTCTACAATTCAATGG
AGGTTTGAGACCTACATTCCCGTAGCGGCGAGGTTTCCAGCTTCGAATGTGGAGGCTCTATAGCCCCTTCAGAACCGACGGTGGATGTGAAAGAGTTTGTGGAAATTTTAGTTTTCCAGTTCGAGCCAGAGCAGAGGGTTGAGGCAGTGGATGTAACACTAAAAGTGGTGTCGAAAATATGGTGGGCAGTTTTAAAATAC
TCTTTGGATATCTTGGAAAATGTGATGCGAACTTGAAAACCTGGTTTGTGCTGCCATAGGAACATGGATAGCGGGATAATACTCATAAACCACCATTTCCAGGAGCTGCAGAGTGAAACCCTATGGAGAAGATACCCTTGGGAAGAATGAACTTACACAACATGCGAGAACTTGCGAAGAGACGTGGTAAGGTATGCGAA
TCTTTAGGAAGCAGTGGAGCGGCCCTGTCCTGGCGACATCGAACCCTTGGTGTGCTTCTTGTTGCAGCTCCGGTAGCAGTGGCTCGTAGAGACACTGTCCCACCCATGCAAAGGTGCTGGAGTCTTTTCTTCCCTTGCGATTTGGCGTAGTTAGTATGTTTTTTGAAGACCTACAATTCCTTCTGGTTGGTGGCATTATT
TGCTTAGGCCTACAGAAGGTTACTTTCTAGCGGCGGCGAGCGGCGTTTGTGTTTACTGTCTTTTCTTCAGCTCTTTATGAGCTGGTTTTTCATCTGTATATGAGCCAAAAGTGTTTTTTCATTTGTATATGATCCAATTTTGGATGCCCTGAAATAGGGTGCATTAGATGTAGTCATTGTTTCTGGTGGTGCTTAGGTAC
CTACAAATTTTTTGTAATATGTACTTTGTTTTTAC