NA ----> NA
Intron 1 GTAAGGCATT ... TGAAGCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.75 | 1 | 16 | 14 |
| A2 | 58.33 | 5 | 7 | 7 |
| A3 | 62.96 | 5 | 8 | 9 |
| A4 | 100 | 0 | 3 | 3 |
| A5 | 62.5 | 3 | 5 | 5 |
| A6 | 50.35 | 35 | 22 | 49 |
| A7 | 71.97 | 22 | 53 | 60 |
| A8 | 72.9 | 29 | 74 | 82 |
| A9 | 65.12 | 30 | 46 | 66 |
| A10 | 73.44 | 17 | 54 | 40 |
>TRINITY_DN41154_c0_g2_i1 from sample A6 / Example spliced isoformGGAAGACGATGAGGTGGAAGATGGCGAAGGAGGTTTGGGAGGAGAAACGATGCAACTTGAAGATGAAGACCAAGCTCCAATGGACTGGGTGAAGACAGAATTAACTGGTGAAAATCAAGGGGCAACATTCAATACGAGGACTGGTGCTGAACCTGAAAGAATACCTGATACACATAACAGTGGCCAGCATTTGGCAAGAA
CATGCCGTCCTATTGGAAACTCATTAAATCAGGAGAGGCGGAGCCAATTTCCTGTCATTCAGCAGCATAAAGATGAGACAGATTCTAGAAACAAGGTAGAGGAGCATTCAATAGCAACAATTGATCTATTAACATCAGAGGTTGCTGGTAGTTGGGCAGTCAGTACAGCTGGTTCAGTTCATGGCGACAATGAATCTCTT
CGGAGTGACGACAGACGACCAGGGACTGGAAGGATCAGTGATGAAGGAATTAATCAAGATTTTGATGCTAGTCAGATTGCAGCAAGTGACAACGCAAGGTCCAGGCAAGATCTACAATTAAGCAGCTTGAAATGTCAGGACACAGCGCCTGAAGATGCAGCACCAGGAAGTCAAAATTCCCCAGTTCCCAAGTTAGCTTC
TCGACAAAGCTATGAGCACCAAGCTTTGAATGAGATGCTTGATATTGTTGCCCCTGATTTCAGGCAGCTTCATGGACTTAGAAGGAATAATGATAATGCCCCTGACACTGAAGAAGATACAGAAGGGGAAGAAGATGATAAAAATCATGATGATGATGATGACACCCAGGAGGGTTCGGAAGAACCAGGCTCTGAATAGG
AAACTGTCTTCGTATAAACTGTGGATGTGTCAGAACAAATGCCAGATGCTTCTCCTGTCATGGCAGTGTTATTGTTCTTTGATCCGAGGATAATAATGCATATTAGAAGTAAAAGCGTGCAAAGCTTTTGCGTGGAAGGCACTTAGCAATATTTGGCTCTTAACATTGAAATCTCTTTTGCAACTTGTATATGAGTTCCT
ATTTATTGACTGTTATTCGACATAAGCAGAGTATACTTTGGTGCTTTGGTACACAAGCACCTTGATTCTGCCTTTGTAACATATAATTATAAAATTATAGTGGACAAGATCTGGGAGGAATTGCTCCAAATTTCTTGTAGAATGGCATTGATTTATGATGTCATACCATTGCTTGGTAATCTGGTGAAGAAAATAGTAGT
ATTTTTTTGGGCAAACAAATAAATGCATTTACTAGGGACA
>TRINITY_DN41154_c0_g2_i2 from sample A6 / Example unspliced isoform:GGAAGACGATGAGGTGGAAGATGGCGAAGGAGGTTTGGGAGGAGAAACGATGCAACTTGAAGATGAAGACCAAGCTCCAATGGACTGGGTGAAGACAGAATTAACTGGTGAAAATCAAGGGGCAACATTCAATACGAGGACTGGTGCTGAACCTGAAAGAATACCTGATACACATAACAGTGGCCAGCATTTGGCAAGAA
CATGCCGTCCTATTGGAAACTCATTAAATCAGGAGAGGCGGAGCCAATTTCCTGTCATTCAGCAGCATAAAGATGAGACAGATTCTAGAAACAAGGTAGAGGAGCATTCAATAGCAACAATTGATCTATTAACATCAGAGGTTGCTGGTAGTTGGGCAGTCAGTACAGCTGGTTCAGTTCATGGCGACAATGAATCTCTT
CGGAGTGACGACAGACGACCAGGGACTGGAAGGATCAGTGATGAAGGAATTAATCAAGATTTTGATGCTAGTCAGATTGCAGCAAGTGACAACGCAAGGTCCAGGCAAGATCTACAATTAAGCAGCTTGAAATGTCAGGACACAGCGCCTGAAGATGCAGCACCAGGAAGTCAAAATTCCCCAGTTCCCAAGTTAGCTTC
TCGACAAAGCTATGAGCACCAAGCTTTGAATGAGATGCTTGATATTGTTGCCCCTGATTTCAGGCAGCTTCATGGACTTAGAAGGAATAATGATAATGCCCCTGACACTGAAGAAGATACAGAAGGGGAAGAAGATGATAAAAATCATGATGATGATGATGACACCCAGGAGGGTTCGGAAGAACCAGGCTCTGAATAGG
AAACTGTCTTCGTATAAACTGTGGATGTGTCAGAACAAATGCCAGATGCTTCTCCTGTCATGGCAGTGTTATTGTTCTTTGgtaaggcatttcattatttggtgtttttatgattgccatgcataatggtttgaaggtttgactactgcagtttgtttgaagcaaagATCCGAGGATAATAATGCATATTAGAAGTAAAA
GCGTGCAAAGCTTTTGCGTGGAAGGCACTTAGCAATATTTTGGCTCTTAACATTGAAATCTCTTTTGCAACTTGTATATGAGTTCCTATTTATTGACTGTTATTCGACATAAGCAGAGTATACTTTGGTGCTTTGGTACACAAGCACCTTGATTCTGCCTTTGTAACATATAATTATAAAATTATAGTGGACAAGATCTG
GGAGGAATTGCTCCAAATTTCTTGTAGAATGGCATTGATTTATGATGTCATACCATTGCTTGGTAATCTGGTGAAGAAAATAGTAGTATTTTTTTGGGCAAACAAATAAATGCATTTACTAGGGACA