sp|Q9ZV43|CHR8_ARATH ----> Protein CHROMATIN REMODELING 8
Intron 1 GTAAATCTTT ... TAATATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 3 | 1 | 0 |
| A2 | 0 | 10 | 0 | 0 |
| A3 | 50 | 4 | 4 | 4 |
| A4 | 36.36 | 7 | 4 | 0 |
| A5 | 25 | 3 | 1 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 37.5 | 5 | 3 | 0 |
| A8 | 25 | 9 | 3 | 0 |
| A9 | 0 | 4 | 0 | 0 |
| A10 | 8.33 | 11 | 1 | 0 |
>TRINITY_DN109898_c1_g1_i2 from sample A3 / Example spliced isoformAACTAGCGGCCAGGTGGCCGTTAAGATTTTCAACGACCGCCCCGGGAGAATTGCTTTAGAGACTCAGTATAATCAGAGCAGCATTTGGTGGCTGTGTTGAAGTCCATCGTTGGACATGAATGGGATCAACTTCGAAGGGTTTGGACGTATCCTGAGGGTCAACTGGAGAATATTGCAAAGGCCCTTAGTTTGCTTCCCCA
GATTGTAGCAAGTATCCATGCAGTTCCTCCACTTAACTTGCCTTCTGCATGTGGGGCACGAGAATATGAATCAGGACTACCTAGTCCCAAAGAAAGAAGTCCAGCAAAGTTCCAGTCTTTGCAGGACTATGAGTGCAGAAAATCAAGCCCATACAGACCATCGGATGGAAGTCCACAGACTATGAGTGCAGAAAATCAAG
CCCATACAGACCATCGGATGGAAGTCCACAGACTCAAAAGAATTGCTTTGCTGTGCAGATATATTTAATAAATGAAGACCGGATCGCTATCCGAAGCACTTATAATGAGAGAGTAAAGGAAGCCTGCCAATCTGTGGCTGGGAGACACTGGAATGCAGAAGAGAAAGTATGGACATTTCCAAAGAATGCACTGGACGATC
TTCTATATTCTTTAGACATGATATCTTCACTTTCTATAGCTGTTGAGGCTATTTCACCATTGGTATTGCCAGATTCTTGGGCCTCAAGAACTCTTGGTAGTTGGAAGCTTGTCCAATCAGATTTAAAATCTGGGAAAGCTCCTTCAGCCAGACAGTCCTTATGGCAAGAAGAACAGCATGTGCCAGAGAGTGATCCTAAA
AAAAATATGCAAAAATTAAAAGTTCGGATTTTTCTACATGGCAGTGGAAAAATTGCAGCTAAATTTGAATATCAACAGCAATTAGTAGCAGCTTTCCGTGCAATTCCAAACTCTGAATGGTTTGCTAAAGAAAGGCTATGGATGTTCCCTGTATCTTCTTTAGCAGTTACAGAAAGAACTCTTTCCCAAGTCGATGCTGT
GGAAGTTGATGTGGAATCATTGGATCCTTTTGTGCGACATGCTCTTGAGGCTGCTTCTGCTCTTCCAAACCTTCTTGGGATGTACGACAATATGCCTGCTTACTTGGAGACTCAACTTCTTCCATTTCAACGGGATGGAGTAAGATTTGTTTTGGAGCATGGTGGACGAGCTCTCATAGCAGATGAAATGGGATTGGGAA
AGACTTTGCAGGCGATCGCTGTTGTCTCATGTCTAAAAGATGCTTGGCCAGTTCTTGTTATTACTCCATCTGCATTGCGTTTACAATGGGCATTGATGATTGAACAATGGCTGAAGATCCGTTCATCTGAAATATTGGTTGTGATGTCACAGTGGTCAGGATCAAAAATTGGGAACTTCAATATTGTGCAGACATCTGGT
AAACAGACTATTCAGCTTGATGGTGTTTTCAACATAATATCATATGAGCTTGTATCCAAGATACAAGAGATACTGGTCAACAGTGATTTTAAGATTGTCATTGCTGATGAGTCCCATTATATGAAGAATCCCCAAGCAAAAAGGACAAATGCTTCTATTCCTCTTTTCCAGAAAGCTCAGTACCGTATCTTGCTTAGCGG
GACTCCAGCGTTATCACGACCTATTGAGCTTTTCAAGCAGCTTGAAGCTTTGTATCCTACTGTGTATAACAATATTCACCAATATGGGCAGCGATATTGCATGGGTGGTATTTTTGGAAAATATCAAGGAGCTTCTAATCGTGAAGAGCTCCATGCTTTAATGAAGAAAACAATCATGATTCGAAGGCTAAAGAAAGATG
TTCTTTCAGAACTTCCAGTCAAGCGTCGACAGCAGATCTTTCTTTCTTTGGAGGATAAAGGTCTGAAACAGATGCGGGCACTTTTTTCAGAGTTGGGGGCCATCAAAAGAGACATAAATGTTTGCAAGTCTGATGAAGAAGCTCAAAGTCTCAAGTATTCTGAAAATCAACTTATAAATAAGATCTATACAGAATCAGCT
GAAGTAAAGATTCCTACTGTCTTGGAGTTTTTAGGAACTATGATTGAAGCAAGCTGCAAATTCCTCGTTTTTTCCCACCATCAATCAATGATGGATGCAATTGAACAATTCGTTGTAAAGAAGAATGTTGGCTACATAAGAATCGATGGAAGTACACCGGCATCATCAAGGCAGACATTAGTCACAAAATTTCAGGATCG
AGAAGATATCAAAGTAGCAGTGCTCTCCATACGTGCTGCAGGAATAGGTGTAACATTGACAGCAGCAAGTACAGTTATATTTGCAGAGTTATCATGGACTCCAGGTGATCTTGTTCAGGCAGAAGATCGTGCACATCGAATTGGACAGG
>TRINITY_DN109898_c1_g1_i5 from sample A3 / Example unspliced isoform:AACTAGCGGCCAGGTGGCCGTTAAGATTTTCAACGACCGCCCCGGGAGAATTGCTTTAGAGACTCAGTATAATCAGAGCAGCATTTGGTGGCTGTGTTGAAGTCCATCGTTGGACATGAATGGGATCAACTTCGAAGGGTTTGGACGTATCCTGAGGGTCAACTGGAGAATATTGCAAAGGCCCTTAGTTTGCTTCCCCA
GATTGTAGCAAGTATCCATGCAGTTCCTCCACTTAACTTGCCTTCTGCATGTGGGGCACGAGAATATGAATCAGGACTACCTAGTCCCAAAGAAAGAAGTCCAGCAAAGTTCCAGTCTTTGCAGGACTATGAGTGCAGAAAATCAAGCCCATACAGACCATCGGATGGAAGTCCACAGACTATGAGTGCAGAAAATCAAG
CCCATACAGACCATCGGATGGAAGTCCACAGACTCAAAAGAATTGCTTTGCTGTGCAGATATATTTAATAAATGAAGACCGGATCGCTATCCGAAGCACTTATAATGAGAGAGTAAAGGAAGCCTGCCAATCTGTGGCTGGGAGACACTGGAATGCAGAAGAGAAAGTATGGACATTTCCAAAGAATGCACTGGACGATC
TTCTATATTCTTTAGACATGATATCTTCACTTTCTATAGCTGTTGAGGCTATTTCACCATTGGTATTGCCAGATTCTTGGGCCTCAAGAACTCTTGGTAGTTGGAAGCTTGTCCAATCAGATTTAAAATCTGGGAAAGCTCCTTCAGCCAGACAGTCCTTATGGCAAGAAGAACAGCATGTGCCAGAGAGTGATCCTAAA
AAAAATATGCAAAAATTAAAAGTTCGGATTTTTCTACATGGCAGTGGAAAAATTGCAGCTAAATTTGAATATCAACAGgtaaatctttttgttttatgtactcatatgttaatacgatgtttcacatattgttttattatattttattagctaactctattgctattgtcacttgtaatatgaagCAATTAGTAGCAGCT
TTCCGTGCAATTCCAAACTCTGAATGGTTTGCTAAAGAAAGGTAATTTTTCACACAATTTTTTTGTCAG
Intron 2 GTAGTTGGAA ... GCTCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90 | 1 | 8 | 10 |
| A2 | 70.59 | 5 | 15 | 9 |
| A3 | 68.42 | 3 | 7 | 6 |
| A4 | 80 | 2 | 6 | 10 |
| A5 | 56.52 | 5 | 8 | 5 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 57.14 | 3 | 3 | 5 |
| A8 | 53.85 | 3 | 4 | 3 |
| A9 | 100 | 0 | 1 | 1 |
| A10 | 66.67 | 2 | 3 | 5 |
>TRINITY_DN40683_c0_g1_i1 from sample A7 / Example spliced isoformGAGGGACACACAGCATGCCCGAGATGAAGATATGCGAGACACACAGGATACAACATTAATTTTACTCCATCTCATACCGAACGGCATCTTCTGCGGAGGTTTCGGTAGTAGAAGAATCCAAAAGACACTACCAAAACGCAAACGCTTGGCAGCAGCAAAAATGGAGGATGAATGGGGTTTAACCATGGAGGAGCTCGACT
CTCTCGAAAAGGATGCCTTCAGAAAGCTCGCCGACCGACATAAACCATCTTCTGCACAGGGAATCCGCGTAATTCCTTCAACTGTTCTGTCGTCTCCTTCCAAGAGAACTAGCGGCCAGGTGGCCGTTAAGATTTTCAACGACCGCCCCGGGAGAATTGCTTTAGAGACTCAGTATAATCAGCATTTGGTGGCTGTGTTG
AAGTCCATCGTTGGACATGAATGGGATCAACTTCGAAGGGTTTGGACGTATCCTGAGGGTCAACTGGAGAATATTGCAAAGGCCCTTAGTTTGCTTCCCCAGATTGTAGCAAGTATCCATGCAGTTCCTCCACTTAACTTGCCTTCTGCATGTGGGGCACGAGAATATGAATCAGGACTACCTAGTCCCAAAGAAAGAAG
TCCAGCAAAGTTCCAGTCTTTGCAGGACTATGAGTGCAGAAAATCAAGCCCATACAGACCATCGGATGGAAGTCCACAGACTCAAAAGAATTGCTTTGCTGTGCAGATATATTTAATAAATGAAGACCGGATCGCTATCCGAAGCACTTATAATGAGAGAGTAAAGGAAGCCTGCCAATCTGTGGCTGGGAGACACTGGA
ATGCAGAAGAGAAAGTATGGACATTTCCAAAGAATGCACTGGACGATCTTCTATATTCTTTAGACATGATATCTTCACTTTCTATAGCTGTTGAGGCTATTTCACCATTGGTATTGCCAGATTCTTGGGCCTCAAGAACTCTTGCCAGACAGTCCTTATGGCAAGAAGAACAGCATGTGCCAGAGAGTGATCCTAAAAAA
AATATGCAAAAATTAAAAGTTCGGATTTTTCTACATGGCAGTGGAAAAATTGCAGCTAAATTTGAATATCAACAGCAATTAGTAGCAGCTTTCCGTGCAATTCCAAACTCTGAATGGTTTGCTAAAGAAAGGCTATGGATGTTCCCTGTATCTTCTTTAGCAGTTACAGAAAGAACTCTTTCCCAAGTCGATGCTGTGGA
AGTTGATGTGGAATCATTGGATCCTTTTGTGCGACATGCTCTTGAGGCTGCTTCTGCTCTTCCAAACCTTCTTGGGATGTACGACAATATGCCTGCTTACTTGGAGACTCAACTTCTTCCATTTCAACGGGATGGAGTAAGATTTGTTTTGGAGCATGGTGGACGAGCTCTCATAGCAGATGAAATGGGATTGGGAAAGA
CTTTGCAGGCGATCGCTGTTGTCTCATGTCTAAAAGATGCTTGGCCAGTTCTTGTTATTACTCCATCTGCATTGCGTTTACAATGGGCATTGATGATTGAACAATGGCTGAAGATCCGTTCATCTGAAATATTGGTTGTGATGTCACAGTGGTCAGGATCAAAAATTGGGAACTTCAATATTGTGCAGACATCTGGTAAA
CAGACTATTCAGCTTGATGGTGTTTTCAACATAATATCATATGAGCTTGTATCCAAGATACAAGAGATACTGGTCAACAGTGATTTTAAGATTGTCATTGCTGATGAGTCCCATTATATGAAGAATCCCCAAGCAAAAAGGACAAATGCTTCTATTCCTCTTTTCCAGAAAGCTCAGTACCGTATCTTGCTTAGCGGGAC
TCCAGCGTTATCACGACCTATTGAGCTTTTCAAGCAGCTTGAAGCTTTGTATCCTACTGTGTATAACAATATTCACCAATATGGGCAGCGATATTGCATGGGTGGTATTTTTGGAAAATATCAAGGAGCTTCTAATCGTGAAGAGCTCCATGCTTTAATGAAGAAAACAATCATGATTCGAAGGCTAAAGAAAGATGTTC
TTTCAGAACTTCCAGTCAAGCGTCGACAGCAGATCTTTCTTTCTTTGGAGGATAAAGGTCTGAAACAGATGCGGGCACTTTTTTCAGAGTTGGGGGCCATCAAAAGAGACATAAATGTTTGCAAGTCTGATGAAGAAGCTCAAAGTCTCAAGTATTCTGAAAATCAACTTATAAATAAGATCTATACAGAATCAGCTGAA
GTAAAGATTCCTACTGTCTTGGAGTTTTTAGGAACTATGATTGAGGCAAGCTGCAAATTCCTCGTTTTTTCCCACCATCAATCAATGATGGATGCAATTGAACAATTCGTTGTAAAGAAGAATGTTGGCTACATAAGAATCGATGGAAGTACACCGGCATCATCAAGGCAGACATTAGTCACAAAATTTCAGGATCGAGA
AGATATCAAAGTAGCAGTGCTCTCCATACGTGCTGCAGGAATAGGTGTAACATTGACAGCAGCAAGTACAGTTATATTTGCAGAGTTATCATGGACTCCAGGTGATCTTGTTCAGGCAGAAGATCGTGCACATCGAATTGGACAGGTTTCCTCAGTCAATGTCTATTATTTACATGCAAACGACACAGTGGATGATATTA
TCTGGAAATCTGTGCAACACAAACTGGAAAATTTAGGCCAGGTGCTTGATGGTCGAGAGGATGCCCTGGAAGCATCTACAAGTCAGCATTATACTTCATGTAAAGGGCAGAGAAAACTAACTTCCTTTTTGCAACCTTGTACAAATAATAATCCTAGTACAATTACGACAGATCAAGAATCAGGAGGTGAAGAGCTTGAC
TCTAATAGTGATGATTCTAGAACTCATAAAGTGAAGAAATTTAAAAGCTGAATTGTATATGTGAGAGAAATGTCAAGCTAACAGGTTCTCAGCAATCAATGTATCCTAGTGGGGAATTATATTCTGTTTTGGAGTGCAATGTATGCAAACTTATAAATGTTCTCATACCAAAATTGTAGCTAATATAGCAGGATGATGAA
GGCTGTGTATCAGTTGGTAATCATATTCAGGCTCACACATATTCTGTTTTGGAGTGCAATATCTCTGAACTTATAAATGTTCTCATACCAAAATTTTATCTAATATAGCAGGATGATGAAGGCAATGTGTATCAATTGATAATCAGCTTTCTATCAGGCTCACACATGTGTGCCCTGGATGCAATGAAGCTACAAGGACA
CGTTTCTCAGTATGTGGTAAGAAGTCTTGCATAGGCTGAAAAGCAAGCATCTTTCAAACCTGGATCTTTTGGAGCACATACAATTCTGATTTTCACCAGAATATAAATGAAGTTAAATTATGTACAAAATGTCATGTAGTAGGCCATTGCTCATGCTTTTTGTGCTTGTAATCTGTCACGTTTCTATTCCTTCTGATCTG
TCCTTTTCACTGGACCATTTTTATGCTGTTTCAAATATATTTACAATGTCGGTGTGTATCAGTTGGTAATCATATTCAGGCTCACACATATTCTGTTTTGGAGTGCAATATCTCTGAACTTATAAATGTTCTCATACCA
>TRINITY_DN40683_c0_g1_i3 from sample A7 / Example unspliced isoform:GAGGGACACACAGCATGCCCGAGATGAAGATATGCGAGACACACAGGATACAACATTAATTTTACTCCATCTCATACCGAACGGCATCTTCTGCGGAGGTTTCGGTAGTAGAAGAATCCAAAAGACACTACCAAAACGCAAACGCTTGGCAGCAGCAAAAATGGAGGATGAATGGGGTTTAACCATGGAGGAGCTCGACT
CTCTCGAAAAGGATGCCTTCAGAAAGCTCGCCGACCGACATAAACCATCTTCTGCACAGGGAATCCGCGTAATTCCTTCAACTGTTCTGTCGTCTCCTTCCAAGAGAACTAGCGGCCAGGTGGCCGTTAAGATTTTCAACGACCGCCCCGGGAGAATTGCTTTAGAGACTCAGTATAATCAGCATTTGGTGGCTGTGTTG
AAGTCCATCGTTGGACATGAATGGGATCAACTTCGAAGGGTTTGGACGTATCCTGAGGGTCAACTGGAGAATATTGCAAAGGCCCTTAGTTTGCTTCCCCAGATTGTAGCAAGTATCCATGCAGTTCCTCCACTTAACTTGCCTTCTGCATGTGGGGCACGAGAATATGAATCAGGACTACCTAGTCCCAAAGAAAGAAG
TCCAGCAAAGTTCCAGTCTTTGCAGGACTATGAGTGCAGAAAATCAAGCCCATACAGACCATCGGATGGAAGTCCACAGACTCAAAAGAATTGCTTTGCTGTGCAGATATATTTAATAAATGAAGACCGGATCGCTATCCGAAGCACTTATAATGAGAGAGTAAAGGAAGCCTGCCAATCTGTGGCTGGGAGACACTGGA
ATGCAGAAGAGAAAGTATGGACATTTCCAAAGAATGCACTGGACGATCTTCTATATTCTTTAGACATGATATCTTCACTTTCTATAGCTGTTGAGGCTATTTCACCATTGGTATTGCCAGATTCTTGGGCCTCAAGAACTCTTGgtagttggaagcttgtccaatcagatttaaaatctgggaaagctccttcagCCAGA
CAGTCCTTATGGCAAGAAGAACAGCATGTGCCAGAGAGTGATCCTAAAAAAAATATGCAAAAATTAAAAGTTCGGATTTTTCTACATGGCAGTGGAAAAATTGCAGCTAAATTTGAATATCAACAGCAATTAGTAGCAGCTTTCCGTGCAATTCCAAACTCTGAATGGTTTGCTAAAGAAAGGCTATGGATGTTCCCTGT
ATCTTCTTTAGCAGTTACAGAAAGAACTCTTTCCCAAGTCGATGCTGTGGAAGTTGATGTGGAATCATTGGATCCTTTTGTGCGACATGCTCTTGAGGCTGCTTCTGCTCTTCCAAACCTTCTTGGGATGTACGACAATATGCCTGCTTACTTGGAGACTCAACTTCTTCCATTTCAACGGGATGGAGTAAGATTTGTTT
TGGAGCATGGTGGACGAGCTCTCATAGCAGATGAAATGGGATTGGGAAAGACTTTGCAGGCGATCGCTGTTGTCTCATGTCTAAAAGATGCTTGGCCAGTTCTTGTTATTACTCCATCTGCATTGCGTTTACAATGGGCATTGATGATTGAACAATGGCTGAAGATCCGTTCATCTGAAATATTGGTTGTGATGTCACAG
TGGTCAGGATCAAAAATTGGGAACTTCAATATTGTGCAGACATCTGGTAAACAGACTATTCAGCTTGATGGTGTTTTCAACATAATATCATATGAGCTTGTATCCAAGATACAAGAGATACTGGTCAACAGTGATTTTAAGATTGTCATTGCTGATGAGTCCCATTATATGAAGAATCCCCAAGCAAAAAGGACAAATGC
TTCTATTCCTCTTTTCCAGAAAGCTCAGTACCGTATCTTGCTTAGCGGGACTCCAGCGTTATCACGACCTATTGAGCTTTTCAAGCAGCTTGAAGCTTTGTATCCTACTGTGTATAACAATATTCACCAATATGGGCAGCGATATTGCATGGGTGGTATTTTTGGAAAATATCAAGGAGCTTCTAATCGTGAAGAGCTCC
ATGCTTTAATGAAGAAAACAATCATGATTCGAAGGCTAAAGAAAGATGTTCTTTCAGAACTTCCAGTCAAGCGTCGACAGCAGATCTTTCTTTCTTTGGAGGATAAAGGTCTGAAACAGATGCGGGCACTTTTTTCAGAGTTGGGGGCCATCAAAAGAGACATAAATGTTTGCAAGTCTGATGAAGAAGCTCAAAGTCTC
AAGTATTCTGAAAATCAACTTATAAATAAGATCTATACAGAATCAGCTGAAGTAAAGATTCCTACTGTCTTGGAGTTTTTAGGAACTATGATTGAGGCAAGCTGCAAATTCCTCGTTTTTTCCCACCATCAATCAATGATGGATGCAATTGAACAATTCGTTGTAAAGAAGAATGTTGGCTACATAAGAATCGATGGAAG
TACACCGGCATCATCAAGGCAGACATTAGTCACAAAATTTCAGGATCGAGAAGATATCAAAGTAGCAGTGCTCTCCATACGTGCTGCAGGAATAGGTGTAACATTGACAGCAGCAAGTACAGTTATATTTGCAGAGTTATCATGGACTCCAGGTGATCTTGTTCAGGCAGAAGATCGTGCACATCGAATTGGACAGGTTT
CCTCAGTCAATGTCTATTATTTACATGCAAACGACACAGTGGATGATATTATCTGGAAATCTGTGCAACACAAACTGGAAAATTTAGGCCAGGTGCTTGATGGTCGAGAGGATGCCCTGGAAGCATCTACAAGTCAGCATTATACTTCATGTAAAGGGCAGAGAAAACTAACTTCCTTTTTGCAACCTTGTACAAATAAT
AATCCTAGTACAATTACGACAGATCAAGAATCAGGAGGTGAAGAGCTTGACTCTAATAGTGATGATTCTAGAACTCATAAAGTGAAGAAATTTAAAAGCTGAATTGTATATGTGAGAGAAATGTCAAGCTAACAGGTTCTCAGCAATCAATGTATCCTAGTGGGGAATTATATTCTGTTTTGGAGTGCAATGTATGCAAA
CTTATAAATGTTCTCATACCAAAATTGTAGCTAATATAGCAGGATGATGAAGGCTGTGTATCAGTTGGTAATCATATTCAGGCTCACACATATTCTGTTTTGGAGTGCAATATCTCTGAACTTATAAATGTTCTCATACCAAAATTTTATCTAATATAGCAGGATGATGAAGGCAATGTGTATCAATTGATAATCAGCTT
TCTATCAGGCTCACACATGTGTGCCCTGGATGCAATGAAGCTACAAGGACACGTTTCTCAGTATGTGGTAAGAAGTCTTGCATAGGCTGAAAAGCAAGCATCTTTCAAACCTGGATCTTTTGGAGCACATACAATTCTGATTTTCACCAGAATATAAATGAAGTTAAATTATGTACAAAATGTCATGTAGTAGGCCATTG
CTCATGCTTTTTGTGCTTGTAATCTGTCACGTTTCTATTCCTTCTGATCTGTCCTTTTCACTGGACCATTTTTATGCTGTTTCAAATATATTTACAATGTCGGTGTGTATCAGTTGGTAATCATATTCAGGCTCACACATATTCTGTTTTGGAGTGCAATATCTCTGAACTTATAAATGTTCTCATACCA