sp|Q42575|MYB1_ARATH ----> Transcription factor MYB1
Intron 1 GTCTGTTTTC ... GTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.57 | 14 | 0 | 32 |
| A2 | 83.87 | 5 | 0 | 26 |
| A3 | 81.82 | 10 | 0 | 45 |
| A4 | 71.43 | 14 | 0 | 35 |
| A5 | 66.67 | 6 | 0 | 12 |
| A6 | 86.44 | 8 | 5 | 51 |
| A7 | 83.33 | 10 | 3 | 50 |
| A8 | 83.87 | 5 | 2 | 26 |
| A9 | 87.21 | 11 | 3 | 75 |
| A10 | 83.64 | 9 | 2 | 46 |
>TRINITY_DN34001_c0_g1_i1 from sample A6 / Example spliced isoformGGGGTTTCTTTGGATTGGGAGTTATTGTTTTAACGCCCGAGGGTTTCCCGGGGCTTCTTAACGGCAAACATAACGACGACGTCAGTTCACCTAACAGGGAAAACCATCCCTCTGAGCTCAATTTTCTTCTAACTATAAGTTTCAGGAAGACATTTGAAGTAGAGGATAGGTAATAAAAATAGTTGTTATTGCACTGGGTT
GCGGGTGAAAAGCTTATAGGAAGGTTGCCGAGAGAGTATAAGTACTGAAAGCAGCTGAAGAATGAAGAGTGACAGCAAGGCTGGCAATGGGAATGGGGGAGATGAGCGCATTAAGGGGCCATGGTCTCCTGAAGAGGATGCCATTCTGAGCAGGCTCGTGGATAAATTTGGAGCCAGGAATTGGAGCCTGATTGCCAGAG
GCATTCCTGGTCGATCCGGAAAATCATGTCGCCTTCGTTGGTGTAATCAGCTGAACCCAGGGGTTAAACGCAAGCCTTTCACGGATGAAGAAGATAGAGCAATTGTTGCTGCTCACGCAATCCATGGAAATAAATGGGCATCCATTGCAAGGATGCTCCAAGGGAGAACTGACAATGCAATAAAGAACCACTGGAATTCA
ACTCTAAGGCGCAAATACCTTGGAATTGATAAATGGAAGAAGGAATCACCCTCCAATGGGTCCGAAAAGGCGAAAGCAGAATTCAGTAATATGGAAAGGAGTGGGCTATTCTCTGACGATACTAGCTCAGATAGGGCCATTGATTCTCTGAAGACAGGTGATGATAGAGGTGAAGTTGGGAGTCATCCCTTATTTAACCA
GCAGATGGCACAAGACAACATACCTGTTCAGTTAGATGACAAGAGTAGGGAAAGTGAGCTTCAAGAGGATGATGGCCAGACACAAGTTGCTGAGCAAAGACCTGAAGCAAAGGTATCTGATAACATTATTCGTCCAACTCCTCGTTTGAGTGCATTTAGCCGCTACAGTCCTCTTGCAACTAATACCAAGATTGCAGGAA
GATCCATGGAACCGAACTTTTTCATATCTGGAACAACCCCAGGAGACATCCCGTCAATGCCTCCCTTGACACATGAAAAGCTTGATAATTCTTGTTTTGCATCTTGCACTCCACCAGCATTTTGTAGCTCATTCTGCAATGATGGCTTCCTAGGAGTACCTAGCCGATGTGGCCGTGGCTGCTGTGGAGCACAAACTCAA
GGATGTGAGAATGCAAATCCTACAAAAGGCTCTTTGTTAGGCCCTGAATATATTGAATTTGCAGAAGATTCTTTTGCAGTCAGTAATAGAATTTCAAATTCTTTCGATTTGTATAGAATGTTGGGAGTAGATAGTGCATCATCAGAAAGCTCCGTAGAGAAGAACATTTCTGTAGCTTTACATACGGCGATCACTCAGAT
GATGATCCCAATGCTTCATTCTCAGATACATCAACCTCAACATAATGGTATGGGGCAGAACTTACACTTTGGTGCTAATCAAGTTGGTGATGGTTTAGTAAATATGATGCGAGAATTGGTTTCCACCGAGATCTCGAGACATACTTTGGCAGCTCTTCAACTGCATCACTTAGGAGAACAAGCAAAAAGACCAAATAGCT
GAATGTTATGCCCGGCTCTTCGTTCAAGGTCTTTATAGGGATATGTGATGGGTTGCATCCACAATTTCAAATGTGTGCCATTTCCTGATATCAAGGAGGCTTTGACCTCATGACCTGCATTTACAGTAAGGAGGCTCAAGCCACATAACTATAGTGGTTGAATATATCATATGATTGAATTGAGGCAAGCTTGGCACTAT
ATGTGAGCACTAAATTATTGTGACAGCAATAGACTTTTGAGTTACATTTAGTTTGGGATCTCTGCAGTAATATCCTTTATCAGTGTATCTTTTATTCAAGTGTACCATACTAGAATGGTCCGGCCTTGTGGGCAAAATAAATGTTTCAACCAATAAATGTGTTTCCTTGGTTTGAAGCTTTACTCTTCAAATCAGAATAT
TTTACATTGATCCCCTTTGGTGGGACTCATTCCCTAGATTGTTAAAAGTTTAGCCTTTAGGCATGTCCATTGAAGTGCAATGGATACAATGATATTGGGCTGAGTGTCATTTCTGCAGTTGGTAAATTCCATTCCTACAGTTCGCATAAAATCCAGGTGTTATTTGTGATGTCATTACTTCAGGAATACTTTTGTTTACT
ACTTCCCTATTGGAGAAGAATAGACATAAGTATCACTAGAGATGTTACTATAATCAAAGGTTAAGATTCTGAAAATGAGGAGTTATATCAGCAGTTAATGTTTTGATTTTTCTAAACCACAAGCAGCAAGCTAGATTGCTGTTGGAAAAAATAATTGATTGATGATCTTCATAAAGAGGAAGTGTAATTTATAATCATAA
AGTCTGAAAGAAGGGTAATTTCAAATTTGGAAGCTTTAAAGTCTTGGTATTTTGGGTAAAAGAACCATAATGCCTGAAAGAAGGGTAATTATGATCTTCCATATCTGTTAGTATTATGGGCACATAAAAACTGATTTCAACTTTCATTGTTGATCTTTAGTTTGTGCAACAAAAGAATATACATCTCACAAAGGTGTTAA
GAATTATACTGAACCACTTGGCTGAGACGTTTATGCAACCCTGTCTGGAAGTAGC
>TRINITY_DN34001_c0_g1_i2 from sample A6 / Example unspliced isoform:GGGGTTTCTTTGGATTGGGAGTTATTGTTTTAACGCCCGAGGGTTTCCCGGGGCTTCTTAACGGCAAACATAACGACGACGTCAGTTCACCTAACAGgtctgttttctttgctctaatctcaggtggccttccctatgtattgcagttgtccttcttcattgacactccaagccaatccattcatccatcaatctccttt
ctctcttatcttctccgatcctcttatccaatatttttctgcaggttaagcctaagcctaaccatgatgtttttgcagGGAAAACCATCCCTCTGAGCTCAATTTTCTTCTAACTATAAGTTTCAGGAAGACATTTGAAGTAGAGGATAGGTAATAAAAATAGTTGTTATTGCACTGGGTTGCGGGTGAAAAGCTTATAG
GAAGGTTGCCGAGAGAGTATAAGTACTGAAAGCAGCTGAAGAATGAAGAGTGACAGCAAGGCTGGCAATGGGAATGGGGGAGATGAGCGCATTAAGGGGCCATGGTCTCCTGAAGAGGATGCCATTCTGAGCAGGCTCGTGGATAAATTTGGAGCCAGGAATTGGAGCCTGATTGCCAGAGGCATTCCTGGTCGATCCGG
AAAATCATGTCGCCTTCGTTGGTGTAATCAGCTGAACCCAGGGGTTAAACGCAAGCCTTTCACGGATGAAGAAGATAGAGCAATTGTTGCTGCTCACGCAATCCATGGAAATAAATGGGCATCCATTGCAAGGATGCTCCAAGGGAGAACTGACAATGCAATAAAGAACCACTGGAATTCAACTCTAAGGCGCAAATACC
TTGGAATTGATAAATGGAAGAAGGAATCACCCTCCAATGGGTCCGAAAAGGCGAAAGCAGAATTCAGTAATATGGAAAGGAGTGGGCTATTCTCTGACGATACTAGCTCAGATAGGGCCATTGATTCTCTGAAGACAGGTGATGATAGAGGTGAAGTTGGGAGTCATCCCTTATTTAACCAGCAGATGGCACAAGACAAC
ATACCTGTTCAGTTAGATGACAAGAGTAGGGAAAGTGAGCTTCAAGAGGATGATGGCCAGACACAAGTTGCTGAGCAAAGACCTGAAGCAAAGGTATCTGATAACATTATTCGTCCAACTCCTCGTTTGAGTGCATTTAGCCGCTACAGTCCTCTTGCAACTAATACCAAGATTGCAGGAAGATCCATGGAACCGAACTT
TTTCATATCTGGAACAACCCCAGGAGACATCCCGTCAATGCCTCCCTTGACACATGAAAAGCTTGATAATTCTTGTTTTGCATCTTGCACTCCACCAGCATTTTGTAGCTCATTCTGCAATGATGGCTTCCTAGGAGTACCTAGCCGATGTGGCCGTGGCTGCTGTGGAGCACAAACTCAAGGATGTGAGAATGCAAATC
CTACAAAAGGCTCTTTGTTAGGCCCTGAATATATTGAATTTGCAGAAGATTCTTTTGCAGTCAGTAATAGAATTTCAAATTCTTTCGATTTGTATAGAATGTTGGGAGTAGATAGTGCATCATCAGAAAGCTCCGTAGAGAAGAACATTTCTGTAGCTTTACATACGGCGATCACTCAGATGATGATCCCAATGCTTCAT
TCTCAGATACATCAACCTCAACATAATGGTATGGGGCAGAACTTACACTTTGGTGCTAATCAAGTTGGTGATGGTTTAGTAAATATGATGCGAGAATTGGTTTCCACCGAGATCTCGAGACATACTTTGGCAGCTCTTCAACTGCATCACTTAGGAGAACAAGCAAAAAGACCAAATAGCTGAATGTTATGCCCGGCTCT
TCGTTCAAGGTCTTTATAGGGATATGTGATGGGTTGCATCCACAATTTCAAATGTGTGCCATTTCCTGATATCAAGGAGGCTTTGACCTCATGACCTGCATTTACAGTAAGGAGGCTCAAGCCACATAACTATAGTGGTTGAATATATCATATGATTGAATTGAGGCAAGCTTGGCACTATATGTGAGCACTAAATTATT
GTGACAGCAATAGACTTTTGAGTTACATTTAGTTTGGGATCTCTGCAGTAATATCCTTTATCAGTGTATCTTTTATTCAAGTGTACCATACTAGAATGGTCCGGCCTTGTGGGCAAAATAAATGTTTCAACCAATAAATGTGTTTCCTTGGTTTGAAGCTTTACTCTTCAAATCAGAATATTTTACATTGATCCCCTTTG
GTGGGACTCATTCCCTAGATTGTTAAAAGTTTAGCCTTTAGGCATGTCCATTGAAGTGCAATGGATACAATGATATTGGGCTGAGTGTCATTTCTGCAGTTGGTAAATTCCATTCCTACAGTTCGCATAAAATCCAGGTGTTATTTGTGATGTCATTACTTCAGGAATACTTTTGTTTACTACTTCCCTATTGGAGAAGA
ATAGACATAAGTATCACTAGAGATGTTACTATAATCAAAGGTTAAGATTCTGAAAATGAGGAGTTATATCAGCAGTTAATGTTTTGATTTTTCTAAACCACAAGCAGCAAGCTAGATTGCTGTTGGAAAAAATAATTGATTGATGATCTTCATAAAGAGGAAGTGTAATTTATAATCATAAAGTCTGAAAGAAGGGTAAT
TTCAAATTTGGAAGCTTTAAAGTCTTGGTATTTTGGGTAAAAGAACCATAATGCCTGAAAGAAGGGTAATTATGATCTTCCATATCTGTTAGTATTATGGGCACATAAAAACTGATTTCAACTTTCATTGTTGATCTTTAGTTTGTGCAACAAAAGAATATACATCTCACAAAGGTGTTAAGAATTATACTGAACCACTT
GGCTGAGACGTTTATGCAACCCTGTCTGGAAGTAGC
Intron 2 GTATCTGATA ... AAGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.21 | 6 | 25 | 39 |
| A2 | 86.05 | 3 | 17 | 20 |
| A3 | 69.23 | 16 | 36 | 36 |
| A4 | 61.11 | 14 | 15 | 29 |
| A5 | 61.54 | 5 | 7 | 9 |
| A6 | 66.77 | 52 | 113 | 96 |
| A7 | 71.05 | 55 | 146 | 124 |
| A8 | 70.31 | 34 | 75 | 86 |
| A9 | 72.16 | 54 | 136 | 144 |
| A10 | 70.66 | 38 | 101 | 82 |
>TRINITY_DN41594_c0_g3_i2 from sample A7 / Example spliced isoformGACGTCAGTTCACCTAACAGGTCTGTTTTCTTTGCTCTAATCTCAGGTGGCCTTCCCTATGTATTGCAGTTGTCCTTCTTCATTGACACTCCAAGCCAATCCATTCATCCATCAATCTCCTTTCTCTCTTATCTTCTCCGATCCTCTTATCCAATATTTTTCTGCAGGTTAAGCCTAAGCCTAACCATGATGTTTTTGCA
GGGAAAACCATCCCTCTGAGCTCAATTTTCTTCTAACTATAAGTTTCAGGAAGACATTTGAAGTAGAGGATAGGTAATAAAAATAGTTGTTATTGCACTGGGTTGCGGGTGAAAAGCTTATAGGAAGGTTGCCGAGAGAGTATAAGTACTGAAAGCAGCTGAAGAATGAAGAGTGACAGCAAGGCTGGCAATGGGAATGG
GGGAGATGAGCGCATTAAGGGGCCATGGTCTCCTGAAGAGGATGCCATTCTGAGCAGGCTCGTGGATAAATTTGGAGCCAGGAATTGGAGCCTGATTGCCAGAGGCATTCCTGGTCGATCCGGAAAATCATGTCGCCTTCGTTGGTGTAATCAGCTGAACCCAGGGGTTAAACGCAAGCCTTTCACGGATGAAGAAGATA
GAGCAATTGTTGCTGCTCACGCAATCCATGGAAATAAATGGGCATCCATTGCAAGGATGCTCCAAGGGAGAACTGACAATGCAATAAAGAACCACTGGAATTCAACTCTAAGGCGCAAATACCTTGGAATTGATAAATGGAAGAAGGAATCACCCTCCAATGGGTCCGAAAAGGCGAAAGCAGAATTCAGTAATATGGAA
AGGAGTGGGCTATTCTCTGATGATACTAGCTCAGATAGGGCCATTGATTCTCTGAAGACAGGTGATGATAGAGGTGAAGTTGGGAGTCATCCCTTATTTAACCAGCAGATGGCACAAGACAACATACCTGTTCAGTTAGATGACAAGAGTAGGGAAAGTGAGCTTCAAGAGGATGATGGCCAGACACAAGTTGCTGAGCA
AAGACCTGAAGCAAAGGAAGATCCATGGAACCGAACTTTTTCATATCTGGAACAACCCCAGGAGACATCCCGTCAATGCCTCCCTTGACACATGAAAAGCTTGATAATTCTTGTTTTGCATCTTGCACTCCACCAGCATTTTGTAGCTCATTCTGCAATGATGGCTTCCTAGGAGTACCTAGCCGATGTGGCCGTGGCTG
CTGTGGAGCACAAACTCAAGGATGTGAGAATGCAAATCCTACAAAAGGCTCTTTGTTAGGCCCTGAATATATTGAATTTGCAGAAGATTCTTTTGCAGTCAGTAATAGAATTTCAAATTCTTTCGATTTGTATAGAATGTTGGGAGTAGATAGTGCATCATCAGAAAGCTCCGTAGAGAAGAACATTTCTGTAGCTTTAC
ATACGGCGATCACTCAGATGATGATCCCAATGCTTCATTCTCAGATACATCAACCTCAACATAATGGTATGGGGCAGAACTTACACTTTGGTGCTAATCAAGTTGGTGATGGTTTAGTAAATATGATGCGAGAATTGGTTTCCACCGAGATCTCGAGACATACTTTGGCAGCTCTTCAACTGCATCACTTAGGAGAACAA
GCAAAAAGACCAAATAGCTGAATGTTATGCCCGGCTCTTCGTTCAAGGTCTTTATAGGGATATGTGATGGGTTGCATCCACAATTTCAAATGTGTGCCATTTCCTGATATCAAGGAGGCTTTGACCTCATGACCTGCATTTACAGTAAGGAGGCTCAAGCCACATAACTATAGTGGTTGAATATATCATATGATTGAATT
GAGGCAAGCTTGGCACTATATGTGAGCACTAAATTATTGTGACAGCAATAGACTTTTGAGTTACATTTAGTTTGGGATCTCTGCAGTAGTATCCTTTATCAGTGTATCTTTTATTCAAGTGTACCATACTAGAATGGTCCGGCCTTGTGGGCAAAATAAATGTTTCAACCAATAAATGTGTTTCCTTGGTTTGAAGCTTT
ACTCTTCAAATCAGAATATTTTACATTGATCCCCTTTGGTGGGACTCATTCCCTAGATTGTTAAAAGTTTAGCCTTTAGGCATGTCCATTGAAGTGCAATGGATACAATGATATTGGGCTGAGTGTCATTTCTGCAGTTGGTAAATTCCATTCCTACAGTTCGCATAAAATCCAGGTGTTATTTGTGATGTCATTACTTC
AGGAATACTTTTGTTTACTACTTCCCTATTGGAGAAGAATAGACATAAGTATCACTAGAGATGTTACTATAATCAAAGGTTAAGATTCTGAAAATGAGGAGTTATATCAGCAGTTAATGTTTTGATTTTTCTAAACCACAAGCAGCAAGCTAGATTGCTGTTGGAAAAAATAATTGATTGATGATCTTCATAAAGAGGAA
GTGTAATTTATAATCATAAAGTCTGAAAGAAGGGTAATTTCAAATTTGGAAGCTTTAAAGTCTTGGTATTTTGGGTAAAAGAACCATAATGCCTGAAAGAAGGGTAATTATGATCTTCCATATCTGTTAGTATTAAGGGCACATAAAAACTGATTTCAACTTTCATAGTTGATCTTTAGTTTGTGCAACAAAAGAATATA
CAT
>TRINITY_DN41594_c0_g3_i1 from sample A7 / Example unspliced isoform:GACGTCAGTTCACCTAACAGGTCTGTTTTCTTTGCTCTAATCTCAGGTGGCCTTCCCTATGTATTGCAGTTGTCCTTCTTCATTGACACTCCAAGCCAATCCATTCATCCATCAATCTCCTTTCTCTCTTATCTTCTCCGATCCTCTTATCCAATATTTTTCTGCAGGTTAAGCCTAAGCCTAACCATGATGTTTTTGCA
GGGAAAACCATCCCTCTGAGCTCAATTTTCTTCTAACTATAAGTTTCAGGAAGACATTTGAAGTAGAGGATAGGTAATAAAAATAGTTGTTATTGCACTGGGTTGCGGGTGAAAAGCTTATAGGAAGGTTGCCGAGAGAGTATAAGTACTGAAAGCAGCTGAAGAATGAAGAGTGACAGCAAGGCTGGCAATGGGAATGG
GGGAGATGAGCGCATTAAGGGGCCATGGTCTCCTGAAGAGGATGCCATTCTGAGCAGGCTCGTGGATAAATTTGGAGCCAGGAATTGGAGCCTGATTGCCAGAGGCATTCCTGGTCGATCCGGAAAATCATGTCGCCTTCGTTGGTGTAATCAGCTGAACCCAGGGGTTAAACGCAAGCCTTTCACGGATGAAGAAGATA
GAGCAATTGTTGCTGCTCACGCAATCCATGGAAATAAATGGGCATCCATTGCAAGGATGCTCCAAGGGAGAACTGACAATGCAATAAAGAACCACTGGAATTCAACTCTAAGGCGCAAATACCTTGGAATTGATAAATGGAAGAAGGAATCACCCTCCAATGGGTCCGAAAAGGCGAAAGCAGAATTCAGTAATATGGAA
AGGAGTGGGCTATTCTCTGATGATACTAGCTCAGATAGGGCCATTGATTCTCTGAAGACAGGTGATGATAGAGGTGAAGTTGGGAGTCATCCCTTATTTAACCAGCAGATGGCACAAGACAACATACCTGTTCAGTTAGATGACAAGAGTAGGGAAAGTGAGCTTCAAGAGGATGATGGCCAGACACAAGTTGCTGAGCA
AAGACCTGAAGCAAAGgtatctgataacattattcgtccaactcctcgtttgagtgcatttagccgctacagtcctcttgcaactaataccaagattgcagGAAGATCCATGGAACCGAACTTTTTCATATCTGGAACAACCCCAGGAGACATCCCGTCAATGCCTCCCTTGACACATGAAAAGCTTGATAATTCTTGTT
TTGCATCTTGCACTCCACCAGCATTTTGTAGCTCATTCTGCAATGATGGCTTCCTAGGAGTACCTAGCCGATGTGGCCGTGGCTGCTGTGGAGCACAAACTCAAGGATGTGAGAATGCAAATCCTACAAAAGGCTCTTTGTTAGGCCCTGAATATATTGAATTTGCAGAAGATTCTTTTGCAGTCAGTAATAGAATTTCA
AATTCTTTCGATTTGTATAGAATGTTGGGAGTAGATAGTGCATCATCAGAAAGCTCCGTAGAGAAGAACATTTCTGTAGCTTTACATACGGCGATCACTCAGATGATGATCCCAATGCTTCATTCTCAGATACATCAACCTCAACATAATGGTATGGGGCAGAACTTACACTTTGGTGCTAATCAAGTTGGTGATGGTTT
AGTAAATATGATGCGAGAATTGGTTTCCACCGAGATCTCGAGACATACTTTGGCAGCTCTTCAACTGCATCACTTAGGAGAACAAGCAAAAAGACCAAATAGCTGAATGTTATGCCCGGCTCTTCGTTCAAGGTCTTTATAGGGATATGTGATGGGTTGCATCCACAATTTCAAATGTGTGCCATTTCCTGATATCAAGG
AGGCTTTGACCTCATGACCTGCATTTACAGTAAGGAGGCTCAAGCCACATAACTATAGTGGTTGAATATATCATATGATTGAATTGAGGCAAGCTTGGCACTATATGTGAGCACTAAATTATTGTGACAGCAATAGACTTTTGAGTTACATTTAGTTTGGGATCTCTGCAGTAGTATCCTTTATCAGTGTATCTTTTATT
CAAGTGTACCATACTAGAATGGTCCGGCCTTGTGGGCAAAATAAATGTTTCAACCAATAAATGTGTTTCCTTGGTTTGAAGCTTTACTCTTCAAATCAGAATATTTTACATTGATCCCCTTTGGTGGGACTCATTCCCTAGATTGTTAAAAGTTTAGCCTTTAGGCATGTCCATTGAAGTGCAATGGATACAATGATATT
GGGCTGAGTGTCATTTCTGCAGTTGGTAAATTCCATTCCTACAGTTCGCATAAAATCCAGGTGTTATTTGTGATGTCATTACTTCAGGAATACTTTTGTTTACTACTTCCCTATTGGAGAAGAATAGACATAAGTATCACTAGAGATGTTACTATAATCAAAGGTTAAGATTCTGAAAATGAGGAGTTATATCAGCAGTT
AATGTTTTGATTTTTCTAAACCACAAGCAGCAAGCTAGATTGCTGTTGGAAAAAATAATTGATTGATGATCTTCATAAAGAGGAAGTGTAATTTATAATCATAAAGTCTGAAAGAAGGGTAATTTCAAATTTGGAAGCTTTAAAGTCTTGGTATTTTGGGTAAAAGAACCATAATGCCTGAAAGAAGGGTAATTATGATC
TTCCATATCTGTTAGTATTAAGGGCACATAAAAACTGATTTCAACTTTCATAGTTGATCTTTAGTTTGTGCAACAAAAGAATATACAT