sp|Q8RWQ4|RGAP7_ARATH ----> Rho GTPase-activating protein 7
Intron 1 GTAATGTTCA ... GCTGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.53 | 13 | 5 | 3 |
| A2 | 37.14 | 11 | 4 | 9 |
| A3 | 44.83 | 8 | 0 | 13 |
| A4 | 40 | 6 | 2 | 6 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 20 | 4 | 2 | 0 |
| A7 | 30 | 7 | 2 | 4 |
| A8 | 29.41 | 6 | 1 | 4 |
| A9 | 17.65 | 7 | 2 | 1 |
| A10 | 13.33 | 13 | 1 | 3 |
>TRINITY_DN37575_c0_g1_i1 from sample A8 / Example spliced isoformGAAGCTTTTTCCCTCCGAGCGTACGAAAAAACAGAATCATTCAATGGCTTCCATTAAATTCTCATCTGTCCAACGTTGGTCTGTGGCCATCTGCATTTGCATTCAGTTTGCTTCAGGCAGTACAGCTGGGAATTGTTGGTAATATCCCGAATCGATAAGTTTTTAGATAAAAGAGGCAAAGTCTCGTATTCAAAGTCTCG
AGTTGAATGAAGTGTCGGAAATACCCGCCGGGGGCAGTTGTTCTTTGGCGTGCTTAGTACGCAGTTAGAGAACAGGACCGCAAAGCGAAGAATACGAGCTTTTTTGAGCTTGTTCTGTCATGATCATTTGCAGATTTCAGGACTGTAATCGGAGGATATGAGGTCCAGTTCGATGGATGTTGTAGCAGAGAACGTTAAAG
GGGACAGCCCGTTCGAACATCTTTCAGAGAGAGGCCTTTCGCCGGCTCTATGGAAAACTAATATTAATAAGCCAAGCGAACCCGGGAATCGGTTTAGCAGCCAGGCTATGTCTAGCTATCATTCGCGATCGAAAAGTGCTTCAGATAACAAAGGGGCCTCTCCAAACTGGGACATATTGCTTGCTAAAGCTGGGAAGACA
GCAAGGAAGGGATCAGGAACACGTTTAAATCCAAATGCTAAAGATATAGCAAGGTGTACACCATCAGAACGTCGAACTGCATTGGAACAAGACGTTGAAGAACTACAGATGCGTTTGGAATATGAAAAATCAATGCGGAATACTCTTGAAAGAGCCATGGGTCGAGCTTCAAGTGCCATTTCACCAGGACACCATCATTT
TGCCTCTCAGACGAGGGAGCTAATAACAGAGATATCTGTGCTTGAAGAGGAAGTCACTAATCGTGAGCAGTACATTCTTTCTCTCTATCGAAATATTTTTGATCAATGCATAGTGGGATCATTGTCAACACAAAATTCAAATAAGACATCACCAGCACATGCAAATTATGAAGACAAAAATCTTCCAAGTATGATTTCAA
GGACTTTGTGCACACCAAGCAAGTTCCCCCCTCCACACCATTATGTTTCTGCTTCCAACCAAGGTTCTCAGAATACAAATATGCAGTTGCAGTCGAAGACAATGCATGCCTCATTATTGAGTACACCATTAACCATGGATGAAAGAATTCAGAGTCCCCATTCTCAATCTGCTTCTAGGGGGCAGCAAGGTTGTGAGGAG
TACCCTGTTGCAAACCAGAAGAATACAGTATCTCGTACCCTTAAAGATTATATCAATGAGGCACCAAACAGATTATCAGAGGAGCTAGTCCGTTGCATGGCAGATATTTATTGCAAATTGTCTGACCCGCCAATTATACAATCTGGTATGGTGTTGTCACCTTCTTCATCAATATCATCCACTAGTCTATTCTCCCCTCG
TGATGCAATCAGTGATGGATGGAGCCCAAGACGAAAGATAGAGTCTGTCTGTGAAACAACTCTGAAGAATCCCTTTAAAATAAAAGGCCAAAGTCGAAATATAGGTCCTTACAGCGCTATGGTGGAAGTACCTTGGATATGTGCAGACAAAGATCAATTAGCATATGCTACCTCTATGCTTCGCACATTCAGATCAATGG
TGGAGCATCTGGAAAGAATTGATCCAAGCCAGCTGCAAAGGGAGTCAAAATTGGCATTCTGGATCAACATCCATAATGCCCTGGTTATGCATGCATATTTAGCATATGGGATACCAAGAAATACCTTGAAGAGGATGCCTTTGTTCCAGAAGGCTGCATACAACATTGGAGGTCATTCTGTTAGTGCCAATACCATAGAA
CATTCCATTTTATGTTGTAAAACATATCGTCCTGCACAGTGGCTTGAAACACTCCTTTCCACTGGAGCTAGGATTAAAGCAGGAGAAGTAAGACGCACTTTTGGGCGGAGATATGGCCTTGATGAGCCTGAACCTCTTGTTTATTTTGCCCTTTGTGGTGGAGCTCATTCAGATCCCGTGGTTCGTATCTACACTGCCAA
GAATGTGCATGATGAGCTTGAAACAGCTAAAAAGGAGTTCCTTCAGGCAAGTATTGGCATTCAGAATCACAAGAAAGTCTTTCTACCAAGGATTCTTGAACGATACGCAAAAGAGGCATCAATCAGCTTGGTAAATTTGCTTCATTGGGTGGCTGAAAATGTAGACAAGCAGCTTCAAAATGCAATCATGAAGTCTATTG
AAAGAAATCCCCAAAAGAAGTCAGCCCAGTGCATTGAATGGTTGCAATATAATGGCAGTTTTCGTTACATCTTTACAAGGGATTTAGCTCTAGGGTTGGCATAATATGTTATCTCTTCTTGGTATTCACTAATACTATGGATTTTTATCTCTTCGGGGTGATTACCAATGCTGTGGATTTTGTGCTTGGGACATCTCCCG
ATATGATCTTATGATCTGTCTTGCCAAACTCTTTCAAAGTGTTGCGACAAGAACTCCACATCTGCCAAGTGAAATTCATGTTTTACCTTATCTTGGATGGTTTTTCAGTAGAATGACAACTAAGTCATTAATAGTCAGCACGTGATGGCAGCTGTTATCTTATGCACAGAACAGAAGGTTCTGCAATCCATCCATAAGAA
TTTGCTTCTTTTTGACCACTAGACATAATTTTGCAGCCTTAATTGAGGTACATTTTTGAGATAGTAAGGTTTACGTGTACACACCTATTCGCTGTGTATCGTTTGCCTTGTATATTTCACAGAATGATCATGTTTTGCACCATCTGGGAGAGAGAGACCAAGGTTATAAATCATCAGCAATCTTCCCAAAATAAAATTGT
AAGGTATAGTTTTACTTAATGTACCCAAGGATACTGGCTTTTCCTTGATGTATATAAAGTATGAACATGTTTGACAGGACTACAATCAATTGATGTGTCGACATTTAGTAGTCTGGATATTCTAAATCCACATGTAACAATGGTCTAACTTTTGCAGTCTTGGCTGTGTTTGCAGTATGGACAATTTATGCATATCTGCT
CAAGTGTTGTATAATTCAGACATGGTTTGAGTGAAACTGGAGTTCATTACTGTACATACAGAGTGAAATGTCAGGTGGATTGTGTACAAATTTCCTAGGCTTTACGTTCAATCTTATTTGCAGCAAAACAGTGACACATTGCTTGTCATCTCAGTTAATGATGGTATTTTGGTAATTGCCTCCAGTATAAATAGTGGAAG
CACATAATATTCCTACATGTTGATGGGCTTTTTGGAATGAGTCGTGACTATCATTTAAAAGATAAACCCATTGTTTCCCCTCAAAGTTTTATTGAAACTAATCCATGT
>TRINITY_DN37575_c0_g1_i2 from sample A8 / Example unspliced isoform:GAAGCTTTTTCCCTCCGAGCGTACGAAAAAACAGAATCATTCAATGGCTTCCATTAAATTCTCATCTGTCCAACGTTGGTCTGTGGCCATCTGCATTTGCATTCAGTTTGCTTCAGGCAGTACAGCTGGGAATTGTTGGTAATATCCCGAATCGATAAGTTTTTAGATAAAAGAGGCAAAGTCTCGTATTCAAAGTCTCG
AGTTGAATGAAGTGTCGGAAATACCCGCCGGGGGCAGTTGTTCTTTGGCGTGCTTAGTACGCAGTTAGAGAACAGGACCGCAAAGCGAAGAATACGAGCTTTTTTGAGCTTGTTCTGTCATGgtaatgttcagtgtcttgtgtttttacagtcatgaatactaaattgtccggcattgctaggttttgtagggtctggag
aagtttcagtgagggtttgctttgtgacccgctgtctcagATCATTTGCAGATTTCAGGACTGTAATCGGAGGATATGAGGTCCAGTTCGATGGATGTTGTAGCAGAGAACGTTAAAGGGGACAGCCCGTTCGAACATCTTTCAGAGAGAGGCCTTTCGCCGGCTCTATGGAAAACTAATATTAATAAGCCAAGCGAACC
CGGGAATCGGTTTAGCAGCCAGGCTATGTCTAGCTATCATTCGCGATCGAAAAGTGCTTCAGATAACAAAGGGGCCTCTCCAAACTGGGACATATTGCTTGCTAAAGCTGGGAAGACAGCAAGGAAGGGATCAGGAACACGTTTAAATCCAAATGCTAAAGATATAGCAAGGTGTACACCATCAGAACGTCGAACTGCAT
TGGAACAAGACGTTGAAGAACTACAGATGCGTTTGGAATATGAAAAATCAATGCGGAATACTCTTGAAAGAGCCATGGGTCGAGCTTCAAGTGCCATTTCACCAGGACACCATCATTTTGCCTCTCAGACGAGGGAGCTAATAACAGAGATATCTGTGCTTGAAGAGGAAGTCACTAATCGTGAGCAGTACATTCTTTCT
CTCTATCGAAATATTTTTGATCAATGCATAGTGGGATCATTGTCAACACAAAATTCAAATAAGACATCACCAGCACATGCAAATTATGAAGACAAAAATCTTCCAAGTATGATTTCAAGGACTTTGTGCACACCAAGCAAGTTCCCCCCTCCACACCATTATGTTTCTGCTTCCAACCAAGGTTCTCAGAATACAAATAT
GCAGTTGCAGTCGAAGACAATGCATGCCTCATTATTGAGTACACCATTAACCATGGATGAAAGAATTCAGAGTCCCCATTCTCAATCTGCTTCTAGGGGGCAGCAAGGTTGTGAGGAGTACCCTGTTGCAAACCAGAAGAATACAGTATCTCGTACCCTTAAAGATTATATCAATGAGGCACCAAACAGATTATCAGAGG
AGCTAGTCCGTTGCATGGCAGATATTTATTGCAAATTGTCTGACCCGCCAATTATACAATCTGGTATGGTGTTGTCACCTTCTTCATCAATATCATCCACTAGTCTATTCTCCCCTCGTGATGCAATCAGTGATGGATGGAGCCCAAGACGAAAGATAGAGTCTGTCTGTGAAACAACTCTGAAGAATCCCTTTAAAATA
AAAGGCCAAAGTCGAAATATAGGTCCTTACAGCGCTATGGTGGAAGTACCTTGGATATGTGCAGACAAAGATCAATTAGCATATGCTACCTCTATGCTTCGCACATTCAGATCAATGGTGGAGCATCTGGAAAGAATTGATCCAAGCCAGCTGCAAAGGGAGTCAAAATTGGCATTCTGGATCAACATCCATAATGCCCT
GGTTATGCATGCATATTTAGCATATGGGATACCAAGAAATACCTTGAAGAGGATGCCTTTGTTCCAGAAGGCTGCATACAACATTGGAGGTCATTCTGTTAGTGCCAATACCATAGAACATTCCATTTTATGTTGTAAAACATATCGTCCTGCACAGTGGCTTGAAACACTCCTTTCCACTGGAGCTAGGATTAAAGCAG
GAGAAGTAAGACGCACTTTTGGGCGGAGATATGGCCTTGATGAGCCTGAACCTCTTGTTTATTTTGCCCTTTGTGGTGGAGCTCATTCAGATCCCGTGGTTCGTATCTACACTGCCAAGAATGTGCATGATGAGCTTGAAACAGCTAAAAAGGAGTTCCTTCAGGCAAGTATTGGCATTCAGAATCACAAGAAAGTCTTT
CTACCAAGGATTCTTGAACGATACGCAAAAGAGGCATCAATCAGCTTGGTAAATTTGCTTCATTGGGTGGCTGAAAATGTAGACAAGCAGCTTCAAAATGCAATCATGAAGTCTATTGAAAGAAATCCCCAAAAGAAGTCAGCCCAGTGCATTGAATGGTTGCAATATAATGGCAGTTTTCGTTACATCTTTACAAGGGA
TTTAGCTCTAGGGTTGGCATAATATGTTATCTCTTCTTGGTATTCACTAATACTATGGATTTTTATCTCTTCGGGGTGATTACCAATGCTGTGGATTTTGTGCTTGGGACATCTCCCGATATGATCTTATGATCTGTCTTGCCAAACTCTTTCAAAGTGTTGCGACAAGAACTCCACATCTGCCAAGTGAAATTCATGTT
TTACCTTATCTTGGATGGTTTTTCAGTAGAATGACAACTAAGTCATTAATAGTCAGCACGTGATGGCAGCTGTTATCTTATGCACAGAACAGAAGGTTCTGCAATCCATCCATAAGAATTTGCTTCTTTTTGACCACTAGACATAATTTTGCAGCCTTAATTGAGGTACATTTTTGAGATAGTAAGGTTTACGTGTACAC
ACCTATTCGCTGTGTATCGTTTGCCTTGTATATTTCACAGAATGATCATGTTTTGCACCATCTGGGAGAGAGAGACCAAGGTTATAAATCATCAGCAATCTTCCCAAAATAAAATTGTAAGGTATAGTTTTACTTAATGTACCCAAGGATACTGGCTTTTCCTTGATGTATATAAAGTATGAACATGTTTGACAGGACTA
CAATCAATTGATGTGTCGACATTTAGTAGTCTGGATATTCTAAATCCACATGTAACAATGGTCTAACTTTTGCAGTCTTGGCTGTGTTTGCAGTATGGACAATTTATGCATATCTGCTCAAGTGTTGTATAATTCAGACATGGTTTGAGTGAAACTGGAGTTCATTACTGTACATACAGAGTGAAATGTCAGGTGGATTG
TGTACAAATTTCCTAGGCTTTACGTTCAATCTTATTTGCAGCAAAACAGTGACACATTGCTTGTCATCTCAGTTAATGATGGTATTTTGGTAATTGCCTCCAGTATAAATAGTGGAAGCACATAATATTCCTACATGTTGATGGGCTTTTTGGAATGAGTCGTGACTATCATTTAAAAGATAAACCCATTGTTTCCCCTC
AAAGTTTTATTGAAACTAATCCATGT
Intron 2 GTAATGTTCA ... TCATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 15 | 5 | 5 |
| A2 | 37.14 | 11 | 4 | 9 |
| A3 | 42.22 | 13 | 0 | 19 |
| A4 | 39.13 | 7 | 2 | 7 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 20 | 4 | 2 | 0 |
| A7 | 50 | 3 | 2 | 4 |
| A8 | 37.5 | 5 | 1 | 5 |
| A9 | 20 | 8 | 2 | 2 |
| A10 | 16.67 | 15 | 1 | 5 |
>TRINITY_DN73855_c0_g1_i2 from sample A1 / Example spliced isoformCCGGGGATAACACAGACAGCCCACTATTACAATATTATTACGGAAAAGTGGGGAGTGGACGGCGTAGGTGAAAACAAAACGTAAGTAAGGTCCACCGGGGATGCCAATCAGACAACACGCTATTACAATATTATTACGGGAGTATTACATTATTATTACGGAAGAGAGATTGGATGGCATAAGAAAAAACAAAACATGTT
ACGTTGGATCCCGCCAGCTGAAAATAAATATTAAATGAAGGACCGGTATCTCTGTCGAAGCTCATCAAGTGTCTATGTCTGAATCCAATCTTTAATGGCATCCTATAAATATACTGTAGTTGGATAATTTAACTACATCATCATCATTGAGTTGAATGAAAGAAGCTTTTTCCCTCCGAGCGTACGAAAAAACAGAATCA
TTCAATGGCTTCCATTAAATTCTCATCTGTCCAACGTTGGTCTGTGGCCATCTGCATTTGCATTCAGTTTGCTTCAGGCAGTACAGCTGGGAATTGTTGGTAATATCCCGAATCGATAAGTTTTTAGATAAAAGAGGCAAAGTCTCGTATTCAAAGTCTCGAGTTGAATGAAGTGTCGGAAATACCCGCCGGGGGCAGTT
GTTCTTTGGCGTGCTTAGTACGCAGTTAGAGAACAGGACCGCAAAGCGAAGAATACGAGCTTTTTTGAGCTTGTTCTGTCATGATTTCAGGACTGTAATCGGAGGATATGAGGTCCAGTTCGATGGATGTTGTAGCAGAGAACGTTAAAGGGGACAGCCCGTTCGAACATCTTTCAGAGAGAGGCCTTTCGCCGGCTCTA
TGGAAAACTAATATTAATAAGCCAAGCGAACCCGGGAATCGGTTTAGCAGCCAGGCTATGTCTAGCTATCATTCGCGATCGAAAAGTGCTTCAGATAACAAAGGGGCCTCTCCAAACTGGGACATATTGCTTGCTAAAGCTGGGAAGACAGCAAGGAAGGGATCAGGAACACGTTTAAATCCAAATGCTAAAGATATAGC
AAGGTGTACACCATCAGAACGTCGAACTGCATTGGAACAAGACGTGAGAGCCAATTATTATGTTCCTGCTTTCTTGTTTACTGTATTGCAATTTAAGATGGAACTTATATTATTGTCAAATCC
>TRINITY_DN73855_c0_g1_i4 from sample A1 / Example unspliced isoform:CCGGGGATAACACAGACAGCCCACTATTACAATATTATTACGGAAAAGTGGGGAGTGGACGGCGTAGGTGAAAACAAAACGTAAGTAAGGTCCACCGGGGATGCCAATCAGACAACACGCTATTACAATATTATTACGGGAGTATTACATTATTATTACGGAAGAGAGATTGGATGGCATAAGAAAAAACAAAACATGTT
ACGTTGGATCCCGCCAGCTGAAAATAAATATTAAATGAAGGACCGGTATCTCTGTCGAAGCTCATCAAGTGTCTATGTCTGAATCCAATCTTTAATGGCATCCTATAAATATACTGTAGTTGGATAATTTAACTACATCATCATCATTGAGTTGAATGAAAGAAGCTTTTTCCCTCCGAGCGTACGAAAAAACAGAATCA
TTCAATGGCTTCCATTAAATTCTCATCTGTCCAACGTTGGTCTGTGGCCATCTGCATTTGCATTCAGTTTGCTTCAGGCAGTACAGCTGGGAATTGTTGGTAATATCCCGAATCGATAAGTTTTTAGATAAAAGAGGCAAAGTCTCGTATTCAAAGTCTCGAGTTGAATGAAGTGTCGGAAATACCCGCCGGGGGCAGTT
GTTCTTTGGCGTGCTTAGTACGCAGTTAGAGAACAGGACCGCAAAGCGAAGAATACGAGCTTTTTTGAGCTTGTTCTGTCATGgtaatgttcagtgtcttgtgtttttacagtcatgaatactaaattgtccggcattgctaggttttgtagggtctggagaagtttcagtgagggtttgctttgtgacccgctgtctca
gatcatttgcagATTTCAGGACTGTAATCGGAGGATATGAGGTCCAGTTCGATGGATGTTGTAGCAGAGAACGTTAAAGGGGACAGCCCGTTCGAACATCTTTCAGAGAGAGGCCTTTCGCCGGCTCTATGGAAAACTAATATTAATAAGCCAAGCGAACCCGGGAATCGGTTTAGCAGCCAGGCTATGTCTAGCTATCA
TTCGCGATCGAAAAGTGCTTCAGATAACAAAGGGGCCTCTCCAAACTGGGACATATTGCTTGCTAAAGCTGGGAAGACAGCAAGGAAGGGATCAGGAACACGTTTAAATCCAAATGCTAAAGATATAGCAAGGTGTACACCATCAGAACGTCGAACTGCATTGGAACAAGACGTTGAAGAACTACAGATGCGTTTGGAAT
ATGAAAAATCAATGCGGAATACTCTTGAAAGAGCCATGGGTCGAGCTTCAAGTGCCATTTCACCAGGACACCATCATTTTGCCTCTCAGACGAGGGAGCTAATAACAGAGATATCTGTGCTTGAAGAGGAAGTCACTAATCGTGAGCAGTACATTCTTTCTCTTTATCGAAATATTTTTGATCAATGCATAGTGGGATCA
TTGTCAACACAAAATTCAAATAAGACATCACCAGCACATGCAAATTATGAAGACAAAAATCTTCCAAGTATGATTTCAAGGACTTTGTGCACACCAAGCAAGTTCCCCCCTCCACACCATTATGTTTCTGCTTCCAACCAAGGTTCTCAGAATACAAATATGCAGTTGCAGTCGAAGACAATGCATGCCTCATTATTGAG
TACACCATTAACCATGGATGAAAGAATTCAGAGTCCCCATTCTCAATCTGCTTCTAGGGGGCAGCAAGGTTGTGAGGAGTACCCTGTTGCAAACCAGAAGAATACAGTATCTCGTACCCTTAAAGATTATATCAATGAGGCACCAAACAGATTATCAGAGGAGCTAGTCCGTTGCATGGCAGATATTTATTGCAAATTGT
CTGACCCGCCAATTATACAATCTGGTATGGTGTTGTCACCTTCTTCATCAATATCATCCACTAGTCTATTCTCCCCTCGTGATGCAATCAGTGATGGATGGAGCCCAAGACGAAAGATAGAGTCTGTCTGTGAAACAACTCTGAAGAATCCCTTTAAAATAAAAGGCCAAAGTCGAAATATAGGTCCTTACAGCGCTATG
GTGGAAGTACCTTGGATATGTGCAGACAAAGATCAATTAGCATATGCTACCTCTATGCTTCGCACATTCAGATCAATGGTGGAGCATCTGGAAAGAATTGATCCAAGCCAGCTGCAAAGGGAGTCAAAATTGGCATTCTGGATCAACATCCATAATGCCCTGGTTATGCATGCATATTTAGCATATGGGATACCAAGAAA
TACCTTGAAGAGGATGCCTTTGTTCCAGAAGGCTGCATACAACATTGGAGGTCATTCTGTTAGTGCCAATACCATAGAACATTCCATTTTATGTTGTAAAACATATCGTCCTGCACAGTGGCTTGAAACACTCCTTTCCACTGGAGCTAGGATTAAAGCAGGAGAAGTAAGACGCACTTTTGGGCGGAGATATGGCCTTG
ATGAGCCTGAACCTCTTGTTTATTTTGCCCTTTGTGGTGGAGCTCATTCAGATCCCGTGGTTCGTATCTACACTGCCAAGAATGTGCATGG