NA ----> NA
Intron 1 GTTTGTGCAT ... AATTTGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 3 | 6 | 4 |
| A2 | 50 | 1 | 0 | 2 |
| A3 | 60 | 4 | 6 | 6 |
| A4 | 77.78 | 1 | 3 | 4 |
| A5 | 80 | 1 | 2 | 6 |
| A6 | 52.38 | 5 | 5 | 6 |
| A7 | 100 | 0 | 0 | 11 |
| A8 | 47.06 | 9 | 11 | 5 |
| A9 | 71.43 | 3 | 8 | 7 |
| A10 | 100 | 0 | 2 | 0 |
>TRINITY_DN29541_c0_g1_i1 from sample A6 / Example spliced isoformGACTGAGTGGGAGGACATCCGTCGCGCCCTGGAAGCTCTGCAAATTAAGGAGGCGGAAATCTTATTAAAGGTCTTAATTCGAAAACTGGAAAGCAATAGTAAGCAGGAGCAGATGGAGAGTGAGGAGAAGATGATCTAAATACTGGTGGGAGCAAATGAGCAACAGCGGAAGAAGATATGAGAATCTTACTATGCAACAC
ATCACGAAGACCTCTGCGACCGTCTGTATAAATCTTGATGGAAGATTGAAGTGTGCTAGAATTCTCATGGGAGGCACAGGCGATTGAGAACACCACGCTTGACAGACACGACCAAATGTTTTCACCACATATTTTCCTATTGAAAAAGGAACGGTAGCCGATGGTTTATCACCATATAAACGGTGAATGCAAGACACCAT
TTCTGGAAAATTGGAGAAAGGTATTGGAGTGTGAATGTGGAAGATTAGACAGGAATTCCATAAGATTAAAGGGTATTCATAACTTTTTAATATTTAATATTTAATATTCATAATTTTTTAATATTTAATATTTCAATATGAAGAAAATTTATATGCAG
>TRINITY_DN29541_c0_g1_i2 from sample A6 / Example unspliced isoform:GACTGAGTGGGAGGACATCCGTCGCGCCCTGGAAGCTCTGCAAATTAAGGAGGCGGAAATCTTATTAAAGGTCTTAATTCGAAAACTGGAAAGCAATAGTAAGCAGGAGCAGATGGAGAGTGAGGAGAAGATGATCTAAATACTGGTGGGAGCAAATGAGCAACAGCGGAAGAAGATATGAGAATCTTACTATGCAACAC
ATCACGAAGACCTCTGCGACCGTCTGTATAAATCTTGATGGAAGATTGAAGgtttgtgcataagttttataaggtgattagagttttcaaattaatatgaacaaagtttaagtttaggtttgattttagtgttttctccttcttgttgacgaaataaaaatgtgtaatagtaagttcagcattttacaacaaacagaatt
tgttgtaatcaattcaagatttctacctggcttattgggggtgggagggcagcagcaaaccctattagatctgtgggtacccgttttttaattatgataagaatttggaagTGTGCTAGAATTCTCATGGGAGGCACAGGCGATTGAGAACACCACGCTTGACAGACACGACCAAATGTTTTCACCACATATTTTCCTGT
TTTGTTTAATGTATTTTTGCAAGATTGAAAAAGGAACGGTAGCCGATGGTTTATCACCATATAAACGGTGAATGCAAGACACCATTTCTGGAAAATTGGAGAAAGGTATTGGAGTGTGAATGTGGAAGATTAGACAGGAATTCCATAAGATTAAAGGGTATTCATAACTTTTTAATATTTAATATTTAATATTCATAATT
TTTTAATATTTAATATTTCAATATGAAGAAAATTTATATGCAG
Intron 2 GTTTTGTTTA ... TTTTTGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.09 | 2.5 | 1 | 2 |
| A2 | 66.67 | 1 | 2 | 2 |
| A3 | 66.66 | 1 | 2 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 33.33 | 2 | 0 | 2 |
| A6 | 40.02 | 13.5 | 4 | 14 |
| A7 | 55.56 | 2 | 2 | 3 |
| A8 | 26.57 | 18 | 5 | 8 |
| A9 | 49.04 | 10.5 | 10 | 10 |
| A10 | 40 | 3 | 1 | 3 |
>TRINITY_DN29541_c0_g1_i1 from sample A6 / Example spliced isoformGACTGAGTGGGAGGACATCCGTCGCGCCCTGGAAGCTCTGCAAATTAAGGAGGCGGAAATCTTATTAAAGGTCTTAATTCGAAAACTGGAAAGCAATAGTAAGCAGGAGCAGATGGAGAGTGAGGAGAAGATGATCTAAATACTGGTGGGAGCAAATGAGCAACAGCGGAAGAAGATATGAGAATCTTACTATGCAACAC
ATCACGAAGACCTCTGCGACCGTCTGTATAAATCTTGATGGAAGATTGAAGTGTGCTAGAATTCTCATGGGAGGCACAGGCGATTGAGAACACCACGCTTGACAGACACGACCAAATGTTTTCACCACATATTTTCCTATTGAAAAAGGAACGGTAGCCGATGGTTTATCACCATATAAACGGTGAATGCAAGACACCAT
TTCTGGAAAATTGGAGAAAGGTATTGGAGTGTGAATGTGGAAGATTAGACAGGAATTCCATAAGATTAAAGGGTATTCATAACTTTTTAATATTTAATATTTAATATTCATAATTTTTTAATATTTAATATTTCAATATGAAGAAAATTTATATGCAG
>TRINITY_DN29541_c0_g1_i2 from sample A6 / Example unspliced isoform:GACTGAGTGGGAGGACATCCGTCGCGCCCTGGAAGCTCTGCAAATTAAGGAGGCGGAAATCTTATTAAAGGTCTTAATTCGAAAACTGGAAAGCAATAGTAAGCAGGAGCAGATGGAGAGTGAGGAGAAGATGATCTAAATACTGGTGGGAGCAAATGAGCAACAGCGGAAGAAGATATGAGAATCTTACTATGCAACAC
ATCACGAAGACCTCTGCGACCGTCTGTATAAATCTTGATGGAAGATTGAAGGTTTGTGCATAAGTTTTATAAGGTGATTAGAGTTTTCAAATTAATATGAACAAAGTTTAAGTTTAGGTTTGATTTTAGTGTTTTCTCCTTCTTGTTGACGAAATAAAAATGTGTAATAGTAAGTTCAGCATTTTACAACAAACAGAATT
TGTTGTAATCAATTCAAGATTTCTACCTGGCTTATTGGGGGTGGGAGGGCAGCAGCAAACCCTATTAGATCTGTGGGTACCCGTTTTTTAATTATGATAAGAATTTGGAAGTGTGCTAGAATTCTCATGGGAGGCACAGGCGATTGAGAACACCACGCTTGACAGACACGACCAAATGTTTTCACCACATATTTTCCTgt
tttgtttaatgtatttttgcaagATTGAAAAAGGAACGGTAGCCGATGGTTTATCACCATATAAACGGTGAATGCAAGACACCATTTCTGGAAAATTGGAGAAAGGTATTGGAGTGTGAATGTGGAAGATTAGACAGGAATTCCATAAGATTAAAGGGTATTCATAACTTTTTAATATTTAATATTTAATATTCATAATT
TTTTAATATTTAATATTTCAATATGAAGAAAATTTATATGCAG