sp|Q6Z8M8|SPL15_ORYSJ ----> Squamosa promoter-binding-like protein 15
Intron 1 GTGAGTACAT ... ACTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.07 | 51 | 8 | 13 |
| A2 | 21.57 | 40 | 10 | 12 |
| A3 | 23.81 | 16 | 4 | 6 |
| A4 | 17.46 | 26 | 2 | 9 |
| A5 | 25 | 6 | 3 | 1 |
| A6 | 17.65 | 35 | 5 | 10 |
| A7 | 18.31 | 29 | 3 | 10 |
| A8 | 14.71 | 29 | 6 | 4 |
| A9 | 20.79 | 40 | 9 | 12 |
| A10 | 22.86 | 27 | 6 | 10 |
>TRINITY_DN42954_c0_g1_i2 from sample A9 / Example spliced isoformCGGAATTATAGTTGTGATGGATAGGAATCACATTGACTAGTTAGACTTATATGTTTTGTTGTGTCCTGGATGCAGAATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGGGTGCAGAAGTTTACATTTCCAGGGG
GGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGTTGCGGACCCTGCCATCTGCAGAGAGCTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTCACAAGAACATTTTCAAGGTTACAGT
CAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGCAAGTGGAGCTAAACTTTGTGAAGGAACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCGCTCTTCTGAAGAAGCTTTTGGATAT
ATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAGTTGCAAACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATTTTCCCTCCTAATTTGATAGGTCCAG
GTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGGTTGCAATCTTGGAGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAAGGAAATTGGCAAAT
AAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATGGGTCGCACACAGACAAAGCTGCGTTATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGTCCATATATGCATTC
TATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGTGGACCATTCAAGTGGGAAAATGTTGATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATGCTTGATGCTCACAC
CTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACAATGTGCTATCTTGTCAAAGACTTGATAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGTTATGGAATTGCATA
TCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTCTTAAATCCATATGCATAGCAAAGTTTTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGGTGGACGATACTCTA
AATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAGATGTTTCTAGTTTCCAAATGTCTGATATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAAATTGTTGGCTAGTT
TCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGCTGGTTGCAATGTGTTTGAGAAATGTTTTCTTTGAGAGGACAGACTGGTCCAAATTGAACGGGGAAATTGCATTTTATTATTTAAGACTGATACTGAAAAATCTTCAGTTATTTTTATAATTTGA
GCAGTTTGTTGTGTTGAAAATCAAGGTCATGGATTATCATAGTGTATTATATAAAATACTCAACATTACCC
>TRINITY_DN42954_c0_g1_i3 from sample A9 / Example unspliced isoform:TTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTTTCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGT
AAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCACGGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAG
CTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCATTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGGACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAA
TTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGGCCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAA
TAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAATATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTG
CGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACGCCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTC
CTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACTTTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCC
CGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCACAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCC
GCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGGGATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCA
TGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCACCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCT
GAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCCACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTC
CGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTCCTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTC
CTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCGACCTACAATCTTTCAAAGCTTGAAAATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAG
CCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCAGCATCCAAGCAACCTTCCTGTGGCATTGCGAGCACAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGT
GATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGTTACGAGAAGATTTACCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTGATTTCTGGAGAAGTGGCAGAGTATTAGTGCAAGCTGAGCAGCGATTAGCCTCTTCCAATGATGGTAAAGTGAGGTTCTGCAGCTCTTGGAGGTCATGTG
ATGCTCCAGAAATTTACTTTACTCAGCCTGTAGCTATTGTAGCTGGTCAAGAAACCACTATTACTTTGAGAGGCCACAATTTGAATACTCCTGGCGCAAAAATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGG
GTGCAGAAGTTTACATTTCCAGGGGGGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGTTGCGGACCCTGCCATCTGCAGAGAGCTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTC
ACAAGAACATTTTCAAGGTTACAGTCAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGCAAGTGGAGCTAAACTTTGTGAAGGAACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCG
CTCTTCTGAAGAAGCTTTTGGATATATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAGTTGCAAACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATT
TTCCCTCCTAATTTGATAGGTCCAGGTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCCGCAAGATgtgagtacattttggaattcctgcatttaaaagattattaatttattagttgttgtgatgataaagatgtggctactacttttgcagGTTGG
GTTGCAATCTTGGAGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAAGGAAATTGGCAAATAAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATGGGTCGCACACAG
ACAAAGCTGCGTTATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGTGGACCATTCAAG
TGGGAAAATGTTGATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATGCTTGATGCTCACACCTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACAATGTGCTATCTT
GTCAAAGACTTGATAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGTTATGGAATTGCATATCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTCTTAAATCCATAT
GCATAGCAAAGTTTTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGGTGGACGATACTCTAAATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAGATGTTTCTAGTT
TCCAAATGTCTGATATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAAATTGTTGGCTAGTTTCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGCTGGTTGCAATGT
GTTTGAGAAATGTTTTCTTTGAGAGGACAGACTGGTCCAAATTGAACGGGGAAATTGCATTTTATTATTTAAGACTGATACTGAAAAATCTTCAGTTATTTTTATAATTTGAGCAGTTTGTTGTGTTGAAAATCAAGGTCATGGATTATCATAGTGTATTATATAAAATACTCAACATTACCC
Intron 2 GTATTTTTGT ... ATGATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.03 | 10 | 6 | 3 |
| A2 | 16.67 | 15 | 5 | 1 |
| A3 | 45.45 | 3 | 2 | 3 |
| A4 | 10.64 | 21 | 3 | 2 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 0 | 8 | 0 | 0 |
| A7 | 0 | 8 | 0 | 0 |
| A8 | 9.09 | 5 | 1 | 0 |
| A9 | 11.11 | 12 | 3 | 0 |
| A10 | 11.11 | 4 | 1 | 0 |
>TRINITY_DN120236_c4_g2_i2 from sample A1 / Example spliced isoformGTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCA
ATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAG
GTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTT
TCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCAC
GGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCGTTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGG
ACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGG
CCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAA
TATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACG
CCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACT
TTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCA
CAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGG
GATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCA
CCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCC
ACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTC
CTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCG
ACCTACAATCTTTCAAAGCTTGAAAATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCA
GCATCCAAGCAACCTTCCTGTGGCATTGCGAGCACAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGTTACGAGAAGATTTACCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTG
ATTTCTGGAGAAGTGGCAGAGTATTAGTGCAAGCTGAGCAGCGATTAGCCTCTTCCAATGATGGTAAAGTGAGGTTCTGCAGCTCTTGGAGGTCATGTGATGCTCCAGAAATTTACTTTACTCAGCCTGTAGCTATTGTAGCTGGTCAAGAAACCACTATTACTTTGAGAGGCCACAATTTGAATACTCCTGGCGCAAAA
ATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGGGTGCAGAAGTTTACATTTCCAGGGGGGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGT
TGCGGACCCTGCCATCTGCAGAGAGCTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTCACAAGAACATTTTCAAGGTTACAGTCAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGC
AAGTGGAGCTAAACTTTGTGAAGGAACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCGCTCTTCTGAAGAAGCTTTTGGATATATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTG
CACAGGGCAGTGAAGAGAAGTTGCAAACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATTTTCCCTCCTAATTTGATAGGTCCAGGTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCC
GCAAGATGTTGGGTTGCAATCTTGGAGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAAGGAAATTGGCAAATAAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATG
GGTCGCACACAGACAAAGCTGCGTTATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGT
GGACCATTCAAGTGGGAAAATGTTGATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATGCTTGATGCTCACACCTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACA
ATGTGCTATCTTGTCAAAGACTTGATAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGTTATGGAATTGCATATCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTC
TTAAATCCATATGCATAGCAAAGTTTTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGGTGGACGATACTCTAAATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAG
ATGTTTCTAGTTTCCAAATGTCTGATATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAAATTGTTGGCTAGTTTCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGC
TGGTTGCAATGTGTTTGAGAAATGTTTTCTTTGAGAGGACAGACTGG
>TRINITY_DN120236_c4_g2_i3 from sample A1 / Example unspliced isoform:GTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCA
ATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAG
GTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTT
TCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCAC
GGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCGTTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGG
ACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGG
CCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAA
TATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACG
CCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACT
TTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCA
CAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGG
GATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCA
CCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCC
ACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTC
CTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCG
ACCTACAATCTTTCAAAGCTTGAAAATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGgtatttttgttcttaccaatgaatataggtttcttcaa
attatctgatgaaagttttaggggaaacatagtactacggtgtacagacagcaaagtagtaaatagatttcagtgccttttgggtttggagtgatttttatgttctccgttgtaaatccagatattttaaaaactgattttacctgtctttctcaattgtctaaccatttgagctattattttctttagtctgccttgta
gatttaggttaggaatggcatgcgggttgaaatttctgtgaaatgttgacccctttgtaatctatttagtatgtttattggttccgtttttctccaagctggtgtctactgagtctgtaatcaatagttgtgtattctgtatttctttgcttcaaaatggagcctcgaaaaagaatgcttttacaatgacacatcaaggt
taatctttggagtcgattctcaaacatgatggcagGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCAGCATCCAAGCAACCTTCCTGTGGCATTGCGAGCACAGGTAAGCTTTCTGGGATAATTTGTTATGGAAGTTGTGATAAAGTTTATGGTTCTTTCAAGCTTGTTCATATTAAACGTGGCGGAATCATGG
ATGCAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGGTATGTGCATATTAATCCCATTTGGCTATTCAATGTACCTCCACCATCACTAATTACAAAAATTGTTTTTGAAATCACAATGGAAT
CACGTCAGATTTTGTGATTCAGTGGCAGAGAAGCAGAGAAAGACCTGTAACATAAACTAATCAAGGAATCTTCATACAGCTTATGCGAGATTGGAATGATTAAATTAATAAATAAGAAACAGACCATGAGATTAATCCAAGATTGGAAGCATA
Intron 3 GTAAGCTTTC ... ATGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30 | 14 | 5 | 7 |
| A2 | 21.43 | 11 | 1 | 5 |
| A3 | 20 | 10 | 2 | 3 |
| A4 | 12.73 | 24 | 0 | 7 |
| A5 | 12.5 | 7 | 1 | 1 |
| A6 | 0 | 8 | 0 | 0 |
| A7 | 0 | 18 | 0 | 0 |
| A8 | 0 | 5 | 0 | 0 |
| A9 | 0 | 7 | 0 | 0 |
| A10 | 0 | 9 | 0 | 0 |
>TRINITY_DN120236_c4_g2_i2 from sample A1 / Example spliced isoformGTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCA
ATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAG
GTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTT
TCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCAC
GGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCGTTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGG
ACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGG
CCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAA
TATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACG
CCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACT
TTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCA
CAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGG
GATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCA
CCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCC
ACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTC
CTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCG
ACCTACAATCTTTCAAAGCTTGAAAATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCA
GCATCCAAGCAACCTTCCTGTGGCATTGCGAGCACAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGTTACGAGAAGATTTACCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTG
ATTTCTGGAGAAGTGGCAGAGTATTAGTGCAAGCTGAGCAGCGATTAGCCTCTTCCAATGATGGTAAAGTGAGGTTCTGCAGCTCTTGGAGGTCATGTGATGCTCCAGAAATTTACTTTACTCAGCCTGTAGCTATTGTAGCTGGTCAAGAAACCACTATTACTTTGAGAGGCCACAATTTGAATACTCCTGGCGCAAAA
ATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGGGTGCAGAAGTTTACATTTCCAGGGGGGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGT
TGCGGACCCTGCCATCTGCAGAGAGCTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTCACAAGAACATTTTCAAGGTTACAGTCAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGC
AAGTGGAGCTAAACTTTGTGAAGGAACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCGCTCTTCTGAAGAAGCTTTTGGATATATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTG
CACAGGGCAGTGAAGAGAAGTTGCAAACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATTTTCCCTCCTAATTTGATAGGTCCAGGTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCC
GCAAGATGTTGGGTTGCAATCTTGGAGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAAGGAAATTGGCAAATAAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATG
GGTCGCACACAGACAAAGCTGCGTTATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGT
GGACCATTCAAGTGGGAAAATGTTGATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATGCTTGATGCTCACACCTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACA
ATGTGCTATCTTGTCAAAGACTTGATAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGTTATGGAATTGCATATCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTC
TTAAATCCATATGCATAGCAAAGTTTTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGGTGGACGATACTCTAAATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAG
ATGTTTCTAGTTTCCAAATGTCTGATATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAAATTGTTGGCTAGTTTCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGC
TGGTTGCAATGTGTTTGAGAAATGTTTTCTTTGAGAGGACAGACTGG
>TRINITY_DN120236_c4_g2_i3 from sample A1 / Example unspliced isoform:GTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCA
ATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAG
GTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTT
TCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCAC
GGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCGTTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGG
ACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGG
CCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAA
TATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACG
CCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACT
TTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCA
CAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGG
GATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCA
CCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCC
ACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTC
CTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCG
ACCTACAATCTTTCAAAGCTTGAAAATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGTATTTTTGTTCTTACCAATGAATATAGGTTTCTTCAA
ATTATCTGATGAAAGTTTTAGGGGAAACATAGTACTACGGTGTACAGACAGCAAAGTAGTAAATAGATTTCAGTGCCTTTTGGGTTTGGAGTGATTTTTATGTTCTCCGTTGTAAATCCAGATATTTTAAAAACTGATTTTACCTGTCTTTCTCAATTGTCTAACCATTTGAGCTATTATTTTCTTTAGTCTGCCTTGTA
GATTTAGGTTAGGAATGGCATGCGGGTTGAAATTTCTGTGAAATGTTGACCCCTTTGTAATCTATTTAGTATGTTTATTGGTTCCGTTTTTCTCCAAGCTGGTGTCTACTGAGTCTGTAATCAATAGTTGTGTATTCTGTATTTCTTTGCTTCAAAATGGAGCCTCGAAAAAGAATGCTTTTACAATGACACATCAAGGT
TAATCTTTGGAGTCGATTCTCAAACATGATGGCAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCAGCATCCAAGCAACCTTCCTGTGGCATTGCGAGCACAGgtaagctttctgggataatttgttatggaagttgtgataaagtttatggttctttcaagcttgttcatattaaacgtggcggaatcatgg
atgcagATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGGTATGTGCATATTAATCCCATTTGGCTATTCAATGTACCTCCACCATCACTAATTACAAAAATTGTTTTTGAAATCACAATGGAAT
CACGTCAGATTTTGTGATTCAGTGGCAGAGAAGCAGAGAAAGACCTGTAACATAAACTAATCAAGGAATCTTCATACAGCTTATGCGAGATTGGAATGATTAAATTAATAAATAAGAAACAGACCATGAGATTAATCCAAGATTGGAAGCATA
Intron 4 GTAATTAACC ... ATTATTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.73 | 17 | 5 | 5 |
| A2 | 26.32 | 14 | 5 | 5 |
| A3 | 23.08 | 10 | 5 | 1 |
| A4 | 16.28 | 18 | 4 | 3 |
| A5 | 28.57 | 5 | 0 | 4 |
| A6 | 9.09 | 10 | 1 | 1 |
| A7 | 39.13 | 7 | 1 | 8 |
| A8 | 22.22 | 7 | 3 | 1 |
| A9 | 12 | 11 | 3 | 0 |
| A10 | 21.74 | 9 | 1 | 4 |
>TRINITY_DN40329_c0_g1_i3 from sample A7 / Example spliced isoformCGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCAATTGACAGCCTGCATTGATTCGTCC
TTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAGGTCAAACCGGTGCCTTACAGTCGAG
TTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTTTCACGCGTTTGCGTTGAATTCGAGA
AGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCACGGCCGGAAAATCGGACTGTGTTTTT
GGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCATTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGGACTTCAAAGAATTTTGAGAAATGGC
CGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGGCCGCCGGAGCAGATGTAATGCCGTA
AAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAATATGGACGGCAAAGCAGGGCCACAA
GTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACGCCAATCTTTGGGATTGGGACAGCGT
CAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACTTTTCTTCCCAGCAAAGATTCGTCCG
AAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCACAGGCGTCACAAAGTATGCGAAACC
CATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGGGATTGTTAGCTGCTAGCCAGGAGAA
CGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCACCTTCACAGGGTTTTGATCTCAACA
TTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCCACAGCATCAAACCCTGCTGCCCCCT
GCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTCCTCCTAATGGATTTACTCGGAAATA
CTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCGACCTACAATCTTTCAAAGCTTGAAA
ATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCAGCATCCAAGCAACCTTCCTGTGGCA
TTGCGAGCACAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGTTACGAGAAGATTTACCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTGATTTCTGGAGAAGTGGCAGAGTATT
AGTGCAAGCTGAGCAGCGATTAGCCTCTTCCAATGATGGTAAAGTGAGGTTCTGCAGCTCTTGGAGGTCATGTGATGCTCCAGAAATTTACTTTACTCAGCCTGTAGCTATTGTAGCTGGTCAAGAAACCACTATTACTTTGAGAGGCCACAATTTGAATACTCCTGGCGCAAAAATTCTTTGTGCTTACAGAGGAAAGT
ATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGGGTGCAGAAGTTTACATTTCCAGGGGGGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGTTGCGGACCCTGCCATCTGCAGAGAG
CTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTCACAAGAACATTTTCAAGGTTACAGTCAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGCAAGTGGAGCTAAACTTTGTGAAGGA
ACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCGCTCTTCTGAAGAAGCTTTTGGATATATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAGTTGCA
AACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATTTTCCCTCCTAATTTGATAGGTCCAGGTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGGTTGCAATCTTGG
AGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAAGGAAATTGGCAAATAAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATGGGTCGCACACAGACAAAGCTGCGTT
ATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGTGGACCATTCAAGTGGGAAAATGTTG
ATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATGCTTGATGCTCACACCTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACAATGTGCTATCTTGTCAAAGACTTGA
TAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGTTATGGAATTGCATATCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTCTTAAATCCATATGCATAGCAAAGTT
TTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGGTGGACGATACTCTAAATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAGATGTTTCTAGTTTCCAAATGTCTGA
TATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAAATTGTTGGCTAGTTTCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGCTGGTTGCAATGTGTTTGAGAAATGT
TTTCTTTGAGAGGACAGACTGGTCCAAATTGAACGGGGAAATTGCATTTTATTATTTAAGACTGATACTGAAAAATCTTCAGTTATTTTTATAATTTGAGCAGTTTGTTGTGTTGAAAA
>TRINITY_DN40329_c0_g1_i2 from sample A7 / Example unspliced isoform:CGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGCTGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCAATTGACAGCCTGCATTGATTCGTCC
TTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCATATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAGGTCAAACCGGTGCCTTACAGTCGAG
TTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGACTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTTTCACGCGTTTGCGTTGAATTCGAGA
AGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAGAGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCACGGCCGGAAAATCGGACTGTGTTTTT
GGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCATTCGAAGCCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGGACTTCAAAGAATTTTGAGAAATGGC
CGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGCGATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGGCCGCCGGAGCAGATGTAATGCCGTA
AAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCTGAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAATATGGACGGCAAAGCAGGGCCACAA
GTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGTCCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACGCCAATCTTTGGGATTGGGACAGCGT
CAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCCAGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACTTTTCTTCCCAGCAAAGATTCGTCCG
AAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACGATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCACAGGCGTCACAAAGTATGCGAAACC
CATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGGGATTGTTAGCTGCTAGCCAGGAGAA
CGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCACCTTCACAGGGTTTTGATCTCAACA
TTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCCACAGCATCAAACCCTGCTGCCCCCT
GCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTCCTCCTAATGGATTTACTCGGAAATA
CTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAAAGAAAATGATAGTGTTTCTGTCTGTAAGGAGGATAACTTAATGCCAGAAACAAGTCCTAGCAATGAAAGGTGTTCGACCTACAATCTTTCAAAGCTTGAAA
ATAAGGTGAATCACCAGAATTTCATGTCAAGGTTGATTCATCAATCGCCAGAGTCCAGGCCTGCTGTTGTGCAGCCTGGTTATGCTTCTTCTTCAGGATCGGATCAATCCCCTGCTAGCTCCAATTCCGATTCACAGGAGCGAACGGGGCGCATTATTTTCAAGCTTTTTGGCCAGCATCCAAGCAACCTTCCTGTGGCA
TTGCGAGCACAGATTTTGGAATGGCTCTCTCATAGCCCGTCCGAGATGGAAAGTTATATAAGGCCTGGATGTGTGATTCTCTCCTTATTTGTGTCCATGCCATCTGCTAGCTGGGATCAGTTACGAGAAGATTTACCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTGATTTCTGGAGAAGTGGCAGAGTATT
AGTGCAAGCTGAGCAGCGATTAGCCTCTTCCAATGATGgtaattaaccagtgctgagtcttgtgttttctttatatgtttaatgcacatgtaatgcttccgtaatttccattaacatgtcttctaaagtttcacatgccatatattattatagGTAAAGTGAGGTTCTGCAGCTCTTGGAGGTCATGTGATGCTCCAGAA
ATTTACTTTACTCAGCCTGTAGCTATTGTAGCTGGTCAAGAAACCACTATTACTTTGAGAGGCCACAATTTGAATACTCCTGGCGCAAAAATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCTGAAGAAAATACTTCCATGAGCTACTCAGAAAGCATACTGACTGATCATAGGGTGCAGAAGTT
TACATTTCCAGGGGGGCCACCTAACGTTTTGGGCCGCTGTTACATAGAGGTGGAGCATGGTTTCAAGGGAAATTGCTTTCCTGTTATTGTTGCGGACCCTGCCATCTGCAGAGAGCTGCAAAGCCTTGAACCTGAGATTGAAAATGAATTCTCGAATGACAAAACATGTTCCCCAAAAGTTGAGCGTTCACAAGAACATT
TTCAAGGTTACAGTCAAGTGACAGCCAGGGAAGAAGTTACCAATTTCTTACATGAGTTAGGATGGCTCTTTCAAAAGAATAGCGGGCGGCAAGTGGAGCTAAACTTTGTGAAGGAACCTTCTTTCCTTGAATTCTCACCTGCTCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAAGAACATGTGCGCTCTTCTGAAG
AAGCTTTTGGATATATTTTTTGAAATGAATGACGGGCGGGAAGCTTCAAGTCAGAAGACGTCCAAAAGCTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAGTTGCAAACAGATGGTGGATCTGCTACTCAATTATGCTCCCTCATCAAGGAGTATTGATTTCCAAACGAAATCTTTCATTTTCCCTCCTAA
TTTGATAGGTCCAGGTGGCCTCACACCATTGCATTTGGCAGCCAGTATACAAAATAGTGAGGAATTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGGTTGCAATCTTGGAGTACATCCTTGGATTCAAGCGGGCAGACTCCTCACGCATATGCTTTGGCCAGGAATAATCATTCATATAATAGGTTGGTTCAAA
GGAAATTGGCAAATAAGAAATATGGTCAGGTATCAATAACAATTTCCAATAATGAAGCATCATTAGATGAGATTGCAAAAGAAGTAAATGGGTCGCACACAGACAAAGCTGCGTTATCGTTACAGAAGCTTTCGCAAAGTTGTGCTCAATGCATGATGAGAGTGAGAAGGACATCTAGTAGTCGAGGAGCCTTGTATCGT
CCATATATGCATTCTATTCTGGCAATTGCAGCAGTATGTGTATGTGTTTGCATTTATTTCCATGGTCCACCACGTGTTTGTTCGTATGGTGGACCATTCAAGTGGGAAAATGTTGATTACGGTCCCTCTTAAGTTGTTCTAGTTTTAGTTCTATATATAGCTTCATATGATTGCCCTCAGACTGCCTTGCCGTCAATATG
CTTGATGCTCACACCTTAGATAGCTGTACTTAATGTTGTGCCATTGGTCTCAATATCTAACCCATGAAGGTGCTCTTGTTTTTCTTCACAATGTGCTATCTTGTCAAAGACTTGATAGACTGAAGAGGCAGCCTTATACAGTTCTGTCTTTTCTCTGGATACAGCAACAAGACACTGCTAAAATTATAATATATATGTGT
TATGGAATTGCATATCCTCTCCGGGTTACAACTGCCAAGAGGTAATTCATATTCAGTTATTGGGGTTCACAAGCGCAGGGCTTGGAAGTCTTAAATCCATATGCATAGCAAAGTTTTTTTTTTCCTCGACAGAGAAAAATCTTCTGACGATAGCCAACGGGAGAGCACACAACCTAAGGTCTGCTTTCTCATTACTATGG
TGGACGATACTCTAAATGCTCTGCAGGTAACTACTTTCCTTGTGCAGACAATCTCTGTTACACGGTGACCATGGCAACATTCACAGGCAGATGTTTCTAGTTTCCAAATGTCTGATATTTATGTACTACTAGATGTTGGTGCCCGAGCATATTGGAAAATTTCGGCTATATAAGCGTCTTGTTCCAGTATATAACCAAAA
ATTGTTGGCTAGTTTCATAAATCTTGTGCTTTTGAGCAAATATTCTTTGTGATGTTAAAATAAGCGCGTCCTCAAATCATCCTACATAGCTGGTTGCAATGTGTTTGAGAAATGTTTTCTTTGAGAGGACAGACTGGTCCAAATTGAACGGGGAAATTGCATTTTATTATTTAAGACTGATACTGAAAAATCTTCAGTTA
TTTTTATAATTTGAGCAGTTTGTTGTGTTGAAAA
Intron 5 GTGAGGGTGA ... CATGGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.63 | 27 | 4 | 6 |
| A2 | 14.29 | 18 | 0 | 6 |
| A3 | 29.41 | 18 | 9 | 6 |
| A4 | 25.71 | 13 | 2 | 7 |
| A5 | 36.84 | 6 | 1 | 6 |
| A6 | 11.11 | 4 | 1 | 0 |
| A7 | 28.57 | 5 | 1 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 28.57 | 5 | 0 | 4 |
| A10 | 17.65 | 7 | 0 | 3 |
>TRINITY_DN100143_c0_g1_i1 from sample A4 / Example spliced isoformGTTACTGTTTAGGGATGCAGTTTTGTCAATGGTTTTTGTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGC
TGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCAATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCAT
ATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAGGTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGA
CTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTTTCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAG
AGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCACGGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCATTCGAAG
CCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGGACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGC
GATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGGCCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCT
GAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAATATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGT
CCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACGCCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCC
AGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACTTTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACG
ATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCACAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGA
AGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGGGATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGAT
GAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCACCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCCCAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAA
ACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCCACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTGACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCG
CTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTCCTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCTCCATCTTCATCACCGCCTGTTGTACG
>TRINITY_DN100143_c0_g1_i3 from sample A4 / Example unspliced isoform:GTTACTGTTTAGGGATGCAGTTTTGTCAATGGTTTTTGTTTTTTAATTTACCTTTTAACCGAAGGGGTGCGGTTAAAGTATGGTTAGGAAACCCTACCGAGGGAGGCCAGCGAGTGAGAATCGCATGAAAGGCAACAGGGCAGGCAGAATGTACAGAGATACGGCGATGATAAGCTGGAATTGTTTGCTTTACTTACGGC
TGCACAGAATTATTGCTGCCTGCGAGTCCCCACCGCAATTGACAGCCTGCATTGATTCGTCCTTTTTTGTCCATTCTTGACCACCGGGGAGAACTCCTTGCAAACCGCTTACGAGACGTCGAGGAGCTTAAATTTGTTCTCTGGAGCAAAATATTATTTTAATCTGCCCCTTGCTTTGGCTTTGGCTTCATTCGAAGCAT
ATAAATTCAATTCGGTTGTGCACTGGTGCGTCACGAGGTCAAACCGGTGCCTTACAGTCGAGTTGTCAAGCGGCGTACTAGGTTCGGAGTTGTCCAGCGTACCGGGTTCTGAGTTTTCGTCCCAGCGATGTTAGGTTTTTGGGCTTTATAAACGTTGCTCACAGTGGCCAGGAAAGCAGGAGGCGGTGGATAAGAGGAGA
CTCGACTCGACACGCTTTTGTGTTCCTAAGAGTCGTTTCACGCGTTTGCGTTGAATTCGAGAAGAAGTTTGAAGGAAACAGGGCCGGTTGAAGCAAATATCCTCGTCAAAAAGGAGACCTCTCAGGTGCGGTAAGTAAACGAAATCTTTATTTAAGTGATCTTAGCGGCTTCAAAGTCTTTGTTATGCAGTTATTTACAG
AGGCTTTAACGAAGGGAAGGAGGAGCATGTAAATCACGGCCGGAAAATCGGACTGTGTTTTTGGCATTCGGTTTTCTGTTTTATTTTGTGGAGAAATCTAGTAACGGGAGCAGGACTTTGTTAGAGATTCTTGGAGCTCCGAGTTCAAAGTTTGTTTCGTATTTCTCCAGTATGTAGACTTTGAGGTGACGCATTCGAAG
CCTGTTAAATAACATTTTGTGAAGCCAGTCAGATCGGACTTCAAAGAATTTTGAGAAATGGCCGCCGGAGCTGATGTATGTCGTTAAATATACCGGGGTTTGAGCTCTTGAAGATTGAAGTGCGTTCTTTTGCCAATTTATGGCTAGGATAGTGAATCACATCAACAGCTGCTGAAGCCTGGTAAGAGCTTTTCTGAAGC
GATTCAGATCGGATTTTAAAAGGATTTTGAGAAATGGCCGCCGGAGCAGATGTAATGCCGTAAAATATTCCGAGGTTTGAGCTGTAAAGACTGAAGTGTGCTTTCGGCTAAATTATGGCTCTGATAATGAATCAAATAAACGGCCGCTAAAGTCATAGGCATCCAGAGAGTCGACATTTATGTTTTGGGGGTTTTTGTCT
GAGAACCTACTGAATTTTTTTCTTCCGTCCTTTTGAATATGGACGGCAAAGCAGGGCCACAAGTGGCCTCGCCATTTTTCCAGCATCAGTTACTTTCAGGTCCATTATACGAGACTCCATTGGCGGCCAAGCGTTGCGTTGAGCCTGCCGATTCTTCATGGACTCGGACAAACTGGCAGCACCAGCAACAGCAGAAAAGT
CCGCCAGTTTACGAAGCGCCGAAGCCGAATTGGAACGCCAATCTTTGGGATTGGGACAGCGTCAGGTTCATCGCAAAACCTGTCGATTCGGGAAATCATCTCGAGCCGAGCCATAGCAATATTAAATCGCAGACTCCTTCCGAAATCTTGCGTCTGGGATCCAACGACGCAGGGTCGAATGTCGTAAATGCTTCGCTTCC
AGATCAAAAAAGGAAGCTTGTAGAAGCCGTGAAAACTTTTCTTCCCAGCAAAGATTCGTCCGAAAACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACGCAGATGATCCAAATCCTTCCCGACAAAACAAACGTGTGAGATCGGGTTCACCGGGTAGCTCATATCCGATGTGTCAAGTGGACG
ATTGCCGCACCGATCTTACCAGTGCCAAGGACTACCACAGGCGTCACAAAGTATGCGAAACCCATTCCAAAGCTTCCAAAGCACTAGTTGGGAGCCTTTTGCAACGCTTTTGTCAGCAGTGCAGCAGgtgagggtgaagtttgtagttgttctgtattagaactgcttgagaatttttaatcttttattgtgctcaagat
ttgtatgacaaacggtgccatggtgtagATTTCATCCGCTTCAAGAATTTGACGAAGGCAAGAGAAGCTGTAGACGAAGACTTGCGGGGCACAACAGGCGAAGGAGGAAAACCCAACCAGAAGACACATTGCCCCGGGGATTGTTAGCTGCTAGCCAGGAGAACGGTAGTTTGGGGAATTTAGACATTGTGAGCCTCGTT
AGCATCTTGTCTCGGCTTCAAGGAAATAACAATGCCATGGAGAAACCAAGTGGGCAGTCGTCTTTGGACGAGAATCAGGTGGTCCAATTGTTGAACAAGATGAACTCGTCACCCCCTTCCTCTCAAAAAGTTTCTGCACCTTCACAGGGTTTTGATCTCAACATTGCGCAAAGCATTCAATCACCTAGATCAGACATTCC
CAAGGCAAGCAGCAATCCATCTGCGGGTTTGACAGCTGAACTGGTGGCTATCCTTTCAGCCTTGACAGGGCCCTCTCATGATGCTCTCGCCCTGCTCAGAAACAGTCTCGCGACTAACCTTAATGCTAATATCAAGCCACAGCATCAAACCCTGCTGCCCCCTGCTCTTCCCGCCGCTGCCCAAAAGCCTCAAGAACGTG
ACTTACAAAACCATAAAACAAATTTTATTCAAGACTCCGGGGCAAACAACCGCAAGATTAATTCGAGTGCTCAAGAGAACCCCCTCCCACCTCATTTGCCGCTTCGACTGTTCAATTCTTTGGAGGAAGACAACCCTCCTCCTAATGGATTTACTCGGAAATACTTTTCGTCTGACAGCAGTAATCCCACAGAACGATCT
CCATCTTCATCACCGCCTGTTGTACG