sp|P27323|HS901_ARATH ----> Heat shock protein 90-1

Intron 1 GTGAGTACAT ... TGCAATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.82	1283	172	52
A2	14.22	1098	182	34
A3	13.12	1464	221	31
A4	11.83	961	129	31
A5	14.48	809	137	12
A6	15.04	1277	226	22
A7	14.46	3022	511	56
A8	12.41	1708	242	58
A9	12.9	2965	439	72
A10	13.59	3103	488	43

>TRINITY_DN107279_c4_g1_i1 from sample A3 / Example spliced isoform

CAAAATTCGATTCGAAGGGCTGACAGATAAGAGCAAACTGGATGCTCAGCCGGAGCTCTTCATTCGGATTGTTCCTGACAAGGCTAACAAGTGCCTCACCATTATTGATAGTGGAATTGGCATGACCAAAGCCGACTTGGTGAACAATTTGGGAACAATTGCGAGATCCGGGACCAAGGAGTTCATGGAAGCTTTACAAG
CCGGGGCAGATGTGAGTATGATTGGTCAGTTCGGTGTGGGGTTCTACTCTGCCTACCTTGTGGCTGAGAAAGTGATTGTTACCACCAAGCACAACGACGATGAGCAATACATTTGGGAATCCCAGGCAGGGGGTTCGTTTACTGTAACCAGAGATGTCAACGGAGAGCCCCTGGGGAGGGGAACTAAAATTACTCTGTTT
CTCAAGGAAGACCAGCTTGAGTACTTGGAGGAGCGGCGGCTGAAGGATCTAGTCAAGAAGCATTCCGAGTTTATCAGTTACCCCATTTATTTGTGGACTGAGAAGACTACAGAGAAGGAAGTGAGCGACGACGAAGAGGAGGAGAAGGAAAAGAAGGAAGATGAAGGGGATATTGAGGAGGAGAAGGAAAAGAAGGAAGA
TGAAGGGGATATTGAGGAAGTGGAGGAGGAGAAGGAAAAGGTGAAGAAGAAAAAGAAGGTTAAGGAAGTGTCACATGAATGGATTCAGGTGAACAAGCAGAAGCCCATTTGGATGAGGAAGCCAGAGGAGATTAGCAAGGAAGAATATGCGTCCTTCTACAAGAGCCTCACTAATGACTGGGAGGACCACTTGGCCGTCA
AGCATTTTTCAGTGGAGGGTCAATTGGAGTTCAAGGCTATTCTCTTTGTTCCCAAGAGGGCACCGTTCGATCTCTTCGACACAAGGAAGAAGCTCAACAACATTAAGCTGTATGTAAGAAGGGTATTCATAATGGATAACTGTGAGGAGCTCATTCCTGAGTACCTGGGCTTTGTTAAAGGAGTGGTGGATTCTGATGAT
CTGCCCCTCAACATTTCTCGGGAGATGCTGCAGCAGAACAAGATTCTGAAGGTGATCAGGA

>TRINITY_DN107279_c4_g1_i7 from sample A3 / Example unspliced isoform:

CAAAATTCGATTCGAAGGGCTGACAGATAAGAGCAAACTGGATGCTCAGCCGGAGCTCTTCATTCGGATTGTTCCTGACAAGGCTAACAAGTGCCTCACCATTATTGATAGTGGAATTGGCATGACCAAAGCCGgtgagtacattagtaatttgatatgattttctcgagtgtaagtttaggtaattgatcaattttaag
ttcagaattatttgattaaaattttctggtatgcaatgcaatccagACTTGGTGAACAATTTGGGAACAATTGCGAGATCCGGGACCAAGGAGTTCATGGAAGCTTTACAAGCCGGGGCAGATGTGAGTATGATTGGTCAGTTCGGTGTGGGGTTCTACTCTGCATACCTTGTGGCCGAGAAAGTGATTGTTACCACTAA
GCACAACGACGATGAGCAATACATTTGGGAATCCCAGGCAGGGGGTTCGTTTACTGTAACCAGAGATGTCAACGGAGAGCCCCTGGGGAGGGGAACTAAAATTACTCTGTTTCTCAAGGAAGACCAGCTTGAGTACTTGGAGGAGCGGCGGCTGAAGGATCTAGTCAAGAAGCATTCCGAGTTTATCAGTTACCCCATTT
ATTTGTGGACTGAGAAGACTACAGAGAAGGAAGTGAGCGACGACGAAGAGGAGGCAGAAGAAAAGAAGGAAGATGAAGGGGATATTGAGGAGGAGAAGGAAAAGAAGGAAGATGAAGGGGATATTGAGGAAGTGGAGGAGGAGAAGGAAAAGGTGAAGAAGAAAAAGAAGGTTAAGGAAGTGTCACATGAATGGATTCAG
GTGAACAAGCAGAAGCCCATTTGGATGAGGAAGCCAGAGGAGATTAGCAAGGAAGAATATGCGTCCTTCTACAAGAGCCTCACTAATGACTGGGAGGACCACTTGGCCGTCAAGCATTTTTCAGTGGAGGGTCAATTGGAGTTCAAGGCTATTCTCTTTGTTCCCAAGAGGGCACCGTTCGATCTCTTCGACACAAGGAA
GAAGCTCAACAACATTAAGCTGTATGTAAGAAGGGTATTCATAATGGATAACTGTGAGGAGCTCATTCCTGAGTACCTGGGCTTTGTTAAAGGAGTGGTGGATTCTGATGATCTGCCCCTCAACATTTCTCGGGAGATGCTGCAGCAGAACAAGATTCTGAAGGTGATCAGGA