NA ----> NA
Intron 1 GTAGGGTATC ... TCTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.85 | 93 | 10.7 | 26 |
| A2 | 28.92 | 60 | 6.7 | 24.4 |
| A3 | 22.55 | 79 | 7.1 | 23 |
| A4 | 27.04 | 37 | 7.9 | 13.7 |
| A5 | 36.36 | 14 | 0.7 | 8 |
| A6 | 29.76 | 59 | 5.6 | 25 |
| A7 | 24.11 | 214 | 10.7 | 68 |
| A8 | 23 | 164 | 7.9 | 49 |
| A9 | 24.21 | 191 | 13.6 | 61 |
| A10 | 24.09 | 208 | 10 | 66 |
>TRINITY_DN117766_c3_g1_i3 from sample A2 / Example spliced isoformGGCACTTTGAGTTTGTGGTTATTTTCTGACTTGCATCTTAGATCTCTTACGTGGCTTATTTTTTGGATTGGCAGCAATATTGGCCGAAATTTCTTGTACACAAGAACAAGCAGCGTTTGACAAAAATGACACAATACTTAATACGCAGAAGGAAACTTGCTCTAAAAGTCAGGGAGAAAGTCATGGCTGTGCCTACAAAA
CAAAAGAAGAGGGAAGCGAGGAGGGAAGCAAAAGCTGAAATAGCAGCTGTTTTAGATAGAGCCATAGAGAAAGAATTGCTGGAGAGGTTGCAAAGTGGTACATATGGTGACATCTACAATTTCCCAGTGAAAGAATATGAGAAAGTCCTAGAAATGGAGGAAATGCAGGCAGCCAGTGAGGAAGAAGATAATGGCGAGGA
GGAGCCAGAGCCTGAAGTAGAGTTTGTGGAAGGCTATGAAATGGAAGAAGAAGATGACATTGAAGATTTCACTGTTGCTGGTATTGATGATGCTGATGTATTGGATGCAGATGAAGACAACACTGATGATGGTTCAGAAGAAATGGATATAGATGGGCGTGTTGGGACAAAGAAGTCACGC
>TRINITY_DN117766_c3_g1_i7 from sample A2 / Example unspliced isoform:TACGCTGCCCCCATCTTCACTGCCTTGAGACCCACGATCCAGAAAATATACGCTGCCCCCATCTTCACTGCCTTGAGACCCACGATCTATAAAAGATAACGTTGGAACCAGAAGGAAAAAAACCTCCTAGGGTTTCGGCCATTAAACCACTCGATCGAAGTAGCTGTAGCAAAAATTACCAATGGAAGCAGTTGTAGCAA
GAGCAAAATGCTGAAGCTCGGAAAATATCGGGTATGAAACAGCCGAAGCAACAAAGGAAGAGAACCAGAAATACAGAGCTGGAGACTCAAAGATCAAACAAGGATGTGTTCATCAAAATTCATCACATTGGTTCCAAACTAATTCATCAAAATTAGCGGCGAACTATTTACTCACTCACCTTTTCTCGCTTCACCACTCA
CCTTATCTCGCTTCAACGAAACCCAACGGCGAACTATTTACCATTCCACTTTAACACAGATTTATGTTAGCAGAATCCTGGCTTCTATATTAGCTTAATTTCAATTTTTATTTTAACATGAAATACGCCTATAAACATTGAGGAAAAGGAGGGAGAAACGACATCCTATTCGCAGCGTTGCCCAAGAAACGGGTTTTCAT
CTCAGGAATCGAAAACGGCCCTAGAAAACGTCGTGTCACGTTTCTTAGCCATTTTTTTTCTGGAAACGAAAGGTGCTGTCACGTTTCTGATAACAGAGCTTCAGACAACCGACTTCATAGAAAGCAGCTATGCAGCACGACGAAGTAATATGGCAGATCATCAGGCATGGCCATTGCAGCTTTATGGCCAAAACCGAAAC
ACAGAACTTTTGTCGAAACGAGTACAATGTTACTGGGCTCTGCAACCGGAGCTCATGCCCACTTGCCAACAGCCGGTATGCAACTATTCGGGAACACGAGGGGGTGCTTTACTTGTATATGAAGTCAATCGAAAGAGCTCATATGCCAAAAAGTTTATGGGAAAGGGTTAAACTTCCAAGGAATTATGAAAAAGCGCTGG
AAACAATTGACAAATTTTTGCAATATTGGCCGAAATTTCTTGTACACAAGAACAAGCAGCGTTTGACAAAAATGACACAATACTTAATACGCAGAAGGAAACTTGCTCTAAAAGTCAGGGAGAAAGTCATGGCTGTGCCTACAAAACAAAAGAAGAGGGAAGCGAGGAGGGAAGCAAAAGCTGAAATAGCAGCTGTTTTA
GATAGAgtagggtatcttgattccctgtttcccttttgcagatctctacattcttctttttgatgggaatcaaatgatgacttttgtatcttgttcagGCCATAGAGAAAGAATTGCTGGAGAGGTTGCAAAGTGGTACTTATGGTGACATATACAATTTCCCAGTGAAAGAATATGAGAAAGTCCTAGAAATGGAGGAA
ATGCAGGCAGCCAGTGAGGAAGAAGATAATGGCGAGGAGGAGCCAGAGCCTGAAGTAGAGTTTGTGGAAGGCTATGAAATGGAAGAAGAAGATGACATTGAAGATTTCACTGTTGCTGGTATTGATGATGCTGATCTATTGGATGCAGATGAAGACAACACTGATGATGGTTCAGAAGAAATGGATATAGATGGGCGTGT
TGGTGTTGGGACAAAGAAGTCACGCACAGAGTCAGGGTCTACTCCACAAAAGCTTGACACAGATGGCATCAGAACAAAGTTGAAGAGGAAAATGAGACCTCATGTGGAGGTTGAATACGAGGATGCAGCTCAACAACAAACTATATATCACTAACCTGATATCAAATTTTCTTCCACGAGTATTTGGACATGTCGGAAAT
CTCCTGGATGCTGATTTGGAAGCGGAAATTCTCATGGCATTAACATTAAGACATTTTTTCTAGTATTTGCAATTTCATGGTATCCTTCCTTCTCTTCCTTTTTTTCCTTGTTGCAACGTGGTTGTAAAATCAATCTTTTTAGTTGTCCTGTCACAACTGTGTCTGCATAACCATTTGAGAATATCCATCTCCTTGTATTG
CTAGGATCAGCTCATTCTTTTTTCCATTAGCTTTTTAATCTGCATCCTTTCTTCTTAGATTAGTTGGTTGCATGTCCCAATTTATGAGAGTGAGGACATGTGACTGTATATTCGAAAGCTTGTTTGTTTCTTCTCTGCTCTAATGCTGGCATCGTTTGGGTAAAGAGATGTTTGTAGTCCAATTGAAGGAGGCAGTAATA
CTTGCCAGTTAGACGAAGTTCACTGGTAAAGATATTAAAAAATTGAGCATGCTTATGGAAACTATATTTTCTTTGTTAATAGCATTTTCTGATTTAGGCTATTTATAGAAGTATATGATGTTTATGTATAACCTAAAGATTGTTGAATTGAACATGCTTATGCACGAGGTTGAAAAAGCAATTACCAATTCTATTTGTTA
CTTTGTGGATCTAATGTGATATGTCATGCCCCTATAAATGGCAAAGGAACCGAGG
Intron 2 GTAATCTTGA ... TCCTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.89 | 93 | 15 | 15 |
| A2 | 18.37 | 60 | 9 | 18 |
| A3 | 13.19 | 79 | 10 | 14 |
| A4 | 19.57 | 37 | 11 | 7 |
| A5 | 22.22 | 14 | 1 | 7 |
| A6 | 19.18 | 59 | 7 | 21 |
| A7 | 14.57 | 214 | 15 | 58 |
| A8 | 13.68 | 164 | 8 | 44 |
| A9 | 14.16 | 191 | 19 | 44 |
| A10 | 15.1 | 208 | 16 | 58 |
>TRINITY_DN103833_c0_g3_i1 from sample A4 / Example spliced isoformGCCCGGGAGAGATTTTTATAATACGAGTAAACAAGAAATACATAATGGTTGGTAGGGTTTGAGGTTTAGGCCATGTTTAACACTTCCAAATTTTTTAACGCTCTTTCGTTCATTTCTGGTAACAGAACTTCACATAATCGACATAATAGAAAGCAGACTTCATAGACAGCAGCTATGCAGCACGACGAAGTAATATGGCA
GATCATCAGGCATGGCCATTGCAGCTTTATGGCCAAAACCGAAACACAGAACTTTTGTCGAAACGAGTACAATGTTACTGGGCTCTGCAACCGGAGCTCATGCCCACTTGCCAACAGCCGGTATGCAACTATTCGGGAACACGAGGGGGTGCTTTACTTGTATATGAAGTCAATCGAAAGAGCTCATATGCCAAAAAGTT
TATGGGAAAGAGTTAAACTTCCAAGGAATTATGAAAAAGCGCTGGAAACAATTGACAAATTTTTGCAATATTGGCCGAAATTTCTTGTACACAAGAACAAGCAGCGTTTGACAAAAATGACACAATACTTAATACGCAGAAGGAAACTTGCTTTAAAAGTCAGGGAGAAAGTCATGGCTGTGCCTACAAAACAAAAGAAG
AGGGAAGCGAGGAGGGAAGCAAAAGCTGAAATAGCAGCTGTTTTAGATAGAGCCATAGAGAAAGAATTGCTGGAGAGGTTGCAAAGTGGTACTTATGGTGACATATACAATTTCCCAGTGAAAGAATATGAGAAAGTCCTAGAAATGGAGGAAATGCAGGCAGCCAGTGAGGAAGAAGATAACGGCGAGGAGGAGCCAGA
GCCTGAAGTAGAGTTTGTGGAAGGCTATGAAATGGAAGAAGAAGATGACATTGAAGATTTCACTGTTGCTGGTATTGATGATGCTGATGAATTGGATGCAGATGAAGACGACACTGATGATGGTTCAGAAGAAATGGATATAGATGGGCGTGTTGGGACAAAGAAGTCACGCACAGAGTCAGGGTCTACTCCACAAAAGC
TTGACACAGATGGCATCAGAACAAAGTTGAAGAGGAAAAAGAGACCTCATGTGGAGGTATATTGCAAATGTCCTTTGATTAATTATTGAAAATGAATAAGAAATATACTAATTATATCTAGATTTCATCTAGAGCTCATTCTAGTTCTTGCTTTGCTGCTTGCCTACC
>TRINITY_DN103833_c0_g3_i3 from sample A4 / Example unspliced isoform:GCCCGGGAGAGATTTTTATAATACGAGTAAACAAGAAATACATAATGGTTGGTAGGGTTTGAGGTTTAGGCCATGTTTAACACTTCCAAATTTTTTAACGCTCTTTCGTTCATTTCTGGTAACAGAACTTCACATAATCGACATAATAGAAAGCAGACTTCATAGACAGCAGCTATGCAGCACGACGAAGTAATATGGCA
GATCATCAGGCATGGCCATTGCAGCTTTATGGCCAAAACCGAAACACAGAACTTTTGTCGAAACGAGTACAATGTTACTGGGCTCTGCAACCGGAGCTCATGCCCACTTGCCAACAGCCGGTATGCAACTATTCGGGAACACGAGGGGGTGCTTTACTTGTATATGAAGTCAATCGAAAGAGCTCATATGCCAAAAAGTT
TATGGGAAAGAGTTAAACTTCCAAGGAATTATGAAAAAGCGCTGGAAACAATTGACAAATTTTTGCAATATTGGCCGAAATTTCTTGTACACAAGAACAAGCAGCGTTTGACAAAAATGACACAATACTTAATACGCAGAAGGAAACTTGCTTTAAAAGTCAGGGAGAAAGTCATGGCTGTGCCTACAAAACAAAAGAAG
AGGGAAGCGAGGAGGGAAGCAAAAGCTGAAATAGCAGCTGTTTTAGATAGAgtaatcttgactccctgtttcccttttgcagatatctacattcttctttttgatgggaatcaaatgatgacttttgtatcctgttcagGCCATAGAGAAAGAATTGCTGGAGAGGTTGCAAAGTGGTACATATGGTGACATCTACAATT
TCCCAGTGAAAGAATATGAGAAAGTCCTAGAAATGGAGGAAATGCAGGCAGCCAGTGAGGAAGAAGATAACGGCGAGGAGGAGCCAGAGCCTGAAGTAGAGTTTGTGGAAGGCTATGAAATGGAAGAAGAAGATGACATTGAAGATTTCACTGTTGCTGGTATTGATGATGCTGATGAATTGGATGCAGATGAAGACGAC
ACTGATGATGGTTCAGAAGAAATGGATATAGATGGGCGTGTTGGGACAAAGAAGTCACGCACAGAGTCAGGGTCTACTCCACAAAAGCTTGACACAGATGGCATCAGAACAAAGTTGAAGAGGAAAAAGAGACCTCATGTGGAGGTTGAATACGAGGATGCAGCTCAACAACAAACTATATATCACTAACCTGATATCAA
ATTTTCTTCCACGAGTATTTGGACATGTCGGAAATCTCCTGGATGCTGATTTGGAAGCTGAAATTCTCATGGCATTAACATTAAGACATTTTTTCTAGTATTTGCAATTTCATGGTATCCTTCCTTCTCTTCCTTTTTTTCCTTGTTGCAACGTGGTTGTAAAATCAATCTTTTTAGTTGTCCTGTCACAACTGTGTCTA
CATAACTATTTGAAAATATCTATCTCTTGTATTGCTAGGATCAGCTCATTGCTTTTTCCATGAACTTTTTAATCTGCATCCTTCTTAGAGTAGTTGGTTGCATGTCCCATTTTATGAGAGTGAGGACATGTGACTGTATATTCTAAAGCTTGATTGTTCCTTCTCTTCTCTAATGCCGGCACCATTATGTTTGTAGTCAG
TTGCAGGAGGCAGTAATACTTGCCAGTTAGAGGAAGTTCACTGGTAAAGATATTAAAAAATTGAGCTTGCTTATGGAAATTATATTGTTCTTTGTTAATAGCATTTTCTGATTTAGGCTATTTATAGAAGTATATGATGTTTATGTAT