sp|Q9FFG1|SDN2_ARATH ----> Small RNA degrading nuclease 2
Intron 1 GTATGATCAA ... GCTTCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.37 | 35 | 9 | 23 |
| A2 | 26.62 | 51 | 15 | 22 |
| A3 | 27.27 | 44 | 11 | 22 |
| A4 | 25.42 | 44 | 15 | 15 |
| A5 | 26.92 | 19 | 2 | 12 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 22.39 | 26 | 6 | 9 |
| A8 | 0 | 4 | 0 | 0 |
| A9 | 21.95 | 16 | 4 | 5 |
| A10 | 22.45 | 19 | 6 | 5 |
>TRINITY_DN117523_c0_g1_i9 from sample A2 / Example spliced isoformGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAA
TTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACT
TTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGAT
GTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCA
AACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGA
TGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTG
TCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAA
GCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGAGGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTG
TGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAGATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAA
ACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGTGTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAG
GTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGCTAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAA
CTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTCACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAAG
>TRINITY_DN117523_c0_g1_i2 from sample A2 / Example unspliced isoform:GTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGgtatgatcaatatttataacttcataaatcacgagaagtatcgcaatgaatcaattgttttgttttctcttggtgtttgaataaatctgattaaggggttttcgctagctgcaatag
cccaggatttcactcgcttcaatagCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATA
TCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGT
CTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGAC
TCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACC
ATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCT
CTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGA
AGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGA
GGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAG
ATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGT
GTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGC
TAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTC
ACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAAG
Intron 2 GTGGTTACTA ... TCCTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.64 | 11 | 54 | 45 |
| A2 | 79.93 | 10.3 | 40 | 40 |
| A3 | 73.37 | 16.6 | 38 | 49 |
| A4 | 70.85 | 19.6 | 41 | 53 |
| A5 | 71.31 | 7.4 | 16 | 20 |
| A6 | 52.94 | 4 | 2 | 7 |
| A7 | 79.92 | 15.1 | 60 | 54 |
| A8 | 87.53 | 3.6 | 21 | 21 |
| A9 | 75.7 | 7.6 | 14 | 33 |
| A10 | 84.03 | 5.9 | 32 | 24 |
>TRINITY_DN122644_c0_g1_i2 from sample A1 / Example spliced isoformTACTACTAAGGAAGACCTTAAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCG
TGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGT
TTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGAC
CCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACAT
ATGCTGTTTTCAAGACTATGGAAGATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGAT
TGCAAAAGTGATTCAATTCTTTTGACGAGGAAGAGGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCG
ACTAATGAAAATACTTGAACAGAGGGATGCTGAGATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACC
CTCCATTACAGCAATGGGCAATGTCCTTGTTTGTGTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATG
GTGACAGCTTTCAGTTATTTGATTACGTAAAAGCTAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGA
TGACATTATTTAGTTTCACGCTGTTATATGGGTCACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAA
>TRINITY_DN122644_c0_g1_i8 from sample A1 / Example unspliced isoform:TGAATATACATGATTGACGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTC
AAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTGAAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTT
GAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACT
TCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGgtggttactagaattatgaggtggaataagcgcaaactttggcggtcacata
tgaaggagtctttagacgtgtctcctgagcagGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCA
GAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGT
AGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAA
TGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACAT
TGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCA
GTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGAGGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGG
AGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAGATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGAT
AAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGTGTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTA
CAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGCTAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACAT
TTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTCACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAA
Intron 3 GTGGGTATGA ... GCTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.73 | 15 | 9 | 4 |
| A2 | 38.12 | 41.3 | 22 | 14 |
| A3 | 36.51 | 28.7 | 12 | 13 |
| A4 | 35.21 | 39 | 20 | 12 |
| A5 | 32.2 | 21 | 6.3 | 10 |
| A6 | 0 | 4.7 | 0 | 0 |
| A7 | 35.37 | 19.7 | 10 | 3 |
| A8 | 0 | 3.7 | 0 | 0 |
| A9 | 31.59 | 13.3 | 6 | 1 |
| A10 | 40.12 | 15 | 7 | 3 |
>TRINITY_DN117523_c0_g1_i10 from sample A2 / Example spliced isoformCAATAGAGAACTTATCACCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATT
GGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATTTTGTGATCCTGAAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAACACATTTTCATGCAGAGAAGCACACCAGGTAGCTACAGGAGTCC
>TRINITY_DN117523_c0_g1_i2 from sample A2 / Example unspliced isoform:GTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACgtgggtatgatcaatatttataacttcataaatcacgagaagtatcgcaatgaatcaattgttttgttttctcttggtgtttgaataaatctgattaaggggttttcgctagctgcaatag
CCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATA
TCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGT
CTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGAC
TCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACC
ATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCT
CTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGA
AGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGA
GGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAG
ATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGT
GTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGC
TAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTC
ACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAAG
Intron 4 GTGGTCAACT ... ATACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30 | 28 | 16 | 8 |
| A2 | 20 | 50 | 6 | 19 |
| A3 | 17.58 | 68 | 8 | 21 |
| A4 | 24.21 | 36 | 10 | 13 |
| A5 | 26.67 | 11 | 1 | 7 |
| A6 | 24.59 | 23 | 3 | 12 |
| A7 | 22.22 | 56 | 10 | 22 |
| A8 | 14.29 | 33 | 3 | 8 |
| A9 | 18.18 | 54 | 9 | 15 |
| A10 | 22.69 | 46 | 9 | 18 |
>TRINITY_DN117523_c0_g1_i2 from sample A2 / Example spliced isoformGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGGTATGATCAATATTTATAACTTCATAAATCACGAGAAGTATCGCAATGAATCAATTGTTTTGTTTTCTCTTGGTGTTTGAATAAATCTGATTAAGGGGTTTTCGCTAGCTGCAATAG
CCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATA
TCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGT
CTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGAC
TCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACC
ATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCT
CTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGA
AGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGA
GGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAG
ATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGT
GTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGC
TAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTC
ACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAAG
>TRINITY_DN117523_c0_g1_i11 from sample A2 / Example unspliced isoform:GTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAA
AGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAA
TTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATA
GCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGgt
ggtcaacttgtgtgtacataattgtaaaaaatactggacaatcttagtatgaattcattttatgatttattcaattgctgattactatttgattttggtggtcatacacatacttgcagAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTA
GACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGT
Intron 5 GTATGATCAA ... GCTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.81 | 22 | 9 | 4 |
| A2 | 22.14 | 51 | 15 | 14 |
| A3 | 24 | 38 | 11 | 13 |
| A4 | 21.95 | 48 | 15 | 12 |
| A5 | 19.35 | 25 | 2 | 10 |
| A6 | 0 | 7 | 0 | 0 |
| A7 | 16.98 | 22 | 6 | 3 |
| A8 | 0 | 5 | 0 | 0 |
| A9 | 12.82 | 17 | 4 | 1 |
| A10 | 17.65 | 21 | 6 | 3 |
>TRINITY_DN117523_c0_g1_i4 from sample A2 / Example spliced isoformGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAA
AGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAA
TTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATA
GCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAA
AAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAG
GCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCA
GCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACG
AAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGAGGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATA
ATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAGATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATT
TTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGTGTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATA
TCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGCTAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAG
TACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTCACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTT
GGATAGTGATGCAAAGAAATCAAAG
>TRINITY_DN117523_c0_g1_i2 from sample A2 / Example unspliced isoform:GTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTG
AAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGgtatgatcaatatttataacttcataaatcacgagaagtatcgcaatgaatcaattgttttgttttctcttggtgtttgaataaatctgattaaggggttttcgctagctgcaatag
CCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATA
TCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGT
CTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGAC
TCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACC
ATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCT
CTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAGATGCAGATGA
AGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGATTGCAAAAGTGATTCAATTCTTTTGACGAGGAAGA
GGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCGACTAATGAAAATACTTGAACAGAGGGATGCTGAG
ATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACCCTCCATTACAGCAATGGGCAATGTCCTTGTTTGT
GTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATGGTGACAGCTTTCAGTTATTTGATTACGTAAAAGC
TAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGATGACATTATTTAGTTTCACGCTGTTATATGGGTC
ACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAAG
Intron 6 GTATGATCAA ... TTTTCGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 16 | 9 | 3 |
| A2 | 21.9 | 41 | 15 | 8 |
| A3 | 25.3 | 31 | 11 | 10 |
| A4 | 22.41 | 45 | 15 | 11 |
| A5 | 16.36 | 23 | 2 | 7 |
| A6 | 0 | 7 | 0 | 0 |
| A7 | 16.67 | 20 | 6 | 2 |
| A8 | 0 | 5 | 0 | 0 |
| A9 | 13.51 | 16 | 4 | 1 |
| A10 | 16.98 | 22 | 6 | 3 |
>TRINITY_DN102829_c0_g1_i10 from sample A5 / Example spliced isoformGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGAGTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTGAAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGG
AGCGCAATAGAGAACTTATCACGTGGCTGCAATAGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAA
GGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGT
CTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTC
GTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAG
TTTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGA
CCCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTATGAAAATAGGATTCTGCTATTTCACTGAACTAAAATTTTTGTCTTTCAGATTAACACTTTCTTTTGTTTGTCTCATACTATTATAGTGTCCTTATGTTTTTTGGTAAATAACAGAGCAAATTTATATTTAGCAGTTAGCAG
CCTGACCTTGTTGAAAATGCAGGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTAC
>TRINITY_DN102829_c0_g1_i6 from sample A5 / Example unspliced isoform:GTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGAGTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTCAAAAGCCTTTTTAGTAGG
AAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTGAAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTTGAGAGAAAGGCACATTGG
AGCGCAATAGAGAACTTATCACGTGGgtatgatcaatatttataacttcataaatcacgagaagtatcgcaatgaatcaattgttttgttttctcttggtgtttgaatatatctgattaaggggttttcgctagCTGCAATAGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACC
CTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACTTCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATG
TTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATATGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAG
GAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGGTAAATTGTAAATATGCATGAAACATTGTTCATGGCTTTGAGCAAGATTAAATTTATTT
CTATATGTGTTATTTTGATAAAGCTCCTTGTTTTACATTCATTTGCTA
Intron 7 GTATGAAAAT ... GAAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.07 | 48.8 | 6.7 | 13.8 |
| A2 | 16.22 | 31 | 7.3 | 6 |
| A3 | 19.44 | 29 | 8.7 | 7 |
| A4 | 15.38 | 11 | 2.3 | 2 |
| A5 | 41.18 | 10 | 5 | 7 |
| A6 | 33.33 | 10 | 2 | 5 |
| A7 | 21.74 | 54 | 10.7 | 15 |
| A8 | 24.24 | 25 | 4 | 8 |
| A9 | 16.22 | 31 | 6.7 | 6 |
| A10 | 16.67 | 40 | 14 | 8 |
>TRINITY_DN122644_c0_g1_i2 from sample A1 / Example spliced isoformTACTACTAAGGAAGACCTTAAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCAGAGGAAGTCG
TGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGTAGGACACAGT
TTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAATGAGATTGAC
CCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACAT
ATGCTGTTTTCAAGACTATGGAAGATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGACTCATATGGGCGTCCTCAGAAATGTGTACCATTTCGTACGGGTGGTTCCAAGAAGGGACCAAACATGGGTATCATTGTACGAAAAATGCAAGTCTTAAAATATGAAGCTCCGGATTCCCAGTTAGATGAT
TGCAAAAGTGATTCAATTCTTTTGACGAGGAAGAGGCCCAGTGAAAGCATTGATAATATGTGTACTGCAGACACAGAAGAAGAGACATTACAAAATAACAAGAAAATAAAGCATGACAAAAGCACAAATCAGGAAATTCTGTGTGAGAATAATTTAGTAAAAGAATGCAACAATTGTGTCCATCTGAAGGAGCAAGAGCG
ACTAATGAAAATACTTGAACAGAGGGATGCTGAGATCAGTGATTTGCAACGAATTATAGCTGCATTAATAAGGAAGAATGGTCTATAGCTTTATTCCTGTCAGGATCATGCCCAACTAGAGTAGTAAATCAAGTCTGCATGAAAATTCATTTTAAAGCCGGTCACTGAAAGAAAAAACCACTATCAAGATAAGCACGACC
CTCCATTACAGCAATGGGCAATGTCCTTGTTTGTGTTTTGGAATTTCAAACTTTCATTTTGAAGAGGAAAGTTGAAGTTGTAACCGCATAGTGCACCAAAGCTGAATTTCGATGTTTGCCATTTCCAAAGGTTTTCTGGAGATGTTCTATATCTCTTTCAAATGAAAGTGATTCAGGTCAGTGTGTACTACAACTACATG
GTGACAGCTTTCAGTTATTTGATTACGTAAAAGCTAACGGTTTTATATGGGAATTGTAAGCTCTTCCAACACACTTTTGCAAAGTTGATGCAACAATTTAATTGCCACCAATTATATACCTATTTATTCAGTGGTTCCTAAATGTCATCAGTACTGGATTTTTTGGAAATCCGAAACTCAACAAATACATTTGAGGCGGA
TGACATTATTTAGTTTCACGCTGTTATATGGGTCACATATAATTGATTGACTGAGGAAAATGTAGTGATTCTTATTGCTGACTATTTTTGCCTGTGAGTCCAGTCCCTGCTGTAGGAAGAGACTATATATTTCACTTTACTCTATTAGTTTGGATAGTGATGCAAAGAAATCAAA
>TRINITY_DN122644_c0_g1_i6 from sample A1 / Example unspliced isoform:TGAATATACATGATTGACGTTTCATCCTTTCATCTTAAACTTCAAAAGAGTGCTACTGTCGTCCCGTAACCCTAGAGTGGCCTCTCAAATTGATTTTAAGAACGATAGAGAGTAAAAGTCCGTTTCATACCGATATCCAGATATTGATTCATGGTCTCTGTTCCCAAGGGCAAAAGCAAAGCGAGCATCCTCTCAGTTTC
AAAAGCCTTTTTAGTAGGAAGTTCTCTCGTGTAGCCGCAGAGCATTCTCATTATTTAGGAAAGCCTTCTCAGAAGGAAATTCTCTAGTGCAGCTGCAGAACATTGTTATTATTTCACACAGCGTCTCAATCAGCGTCTTCAATCCGAAGAGAGCGTATTTGAAGCTGTGGCGACTAACGGTGTGGACCTGTTGTTATTTT
GAGAGAAAGGCACATTGGAGCGCAATAGAGAACTTATCACGTGGCCCAGGATTTCACTCGCTTCAATAGCCTGTAAAGGGGCACTGCAGGTCTGCGCTACCCTAATTTTTGAGACCAGAAGCCATGGCGGAGTGCACAGTCAACTTTACAGAGGAAGACAAAGAGATTCTTGTGAAAATTGTCAAATTTGCTCAAGCACT
TCAAATCAAGGGCTCTAAAGGAGATTGGCAGGAATTTTTAAATATCCATGATAGTAAATTTGGTTCATCATATTGTGATCCTGGAAAGAAATCGTGGGATGTTCTGGCAGCTTTTGTGAAGACATTTACTACTAAGGAAGACCTTAAGGTGGTTACTAGAATTATGAGGTGGAATAAGCGCAAACTTTGGCGGTCACATA
TGAAGGAGTCTTTAGACGTGTCTCCTGAGCAGGAGCTGGTATGTCTAACTTATAAACACCCAAGATCTGAAAGGCAATATTCATTTCCTTCCTATCATGAGGAATGGCTGGTAACAAAATTGGGTAAGTTACCAAATTCGAGCAGTCCAGACAGGCTGATAGCTATAGATTGTGAGATGGTCCGATGTGAAGATGGATCA
GAGGAAGTCGTGAAAGTTTGTGCGGTGGATCAAAATTTAGAGACTCTGATAGATCTGCTTGTGAAACCATCAAAACCTGTAGCTAACTACCTGACAGAAATAACTGGAGTTACTGCGGAGGATCTTGAGGGTGTAACCTGTAATTTGAAAGCTGTACAGAAAAAACTCAAGAAATTACTCAAACCAAACACAATTGTTGT
AGGACACAGTTTGCATCACGACCTGAGAGCATTGAAGGTAGACCATGCTAGAGTTATTGACACAGCATTCATATTCCAGTATCAAAATAAGCCTAGCTGCTACACCCCTAGTTTAAGTAAATTGTGTGAGGTTGTGCTTGGATATGACTTACGAGAGGAAGGCAAGCCACACATTTGTTTGGATGATGCCATTGCTGCAA
TGAGATTGACCCTTTCCAAACTAGATCGTGGACTTAATGATCCTCTCGACATGGGGGATCTTGAAgtatgaaaataggattctgctatttcactgaactaaaatttttgtctttcagattaacactttcttttgtttgtctcatactattatagtgtccttatgttttttggtaaataacagagcaaatttatatttagc
agttagcagcctgaccttgttgaaaatgcagGTAAATGAAGCAGACTTCTCAAAGCTTTATATTCATAGAATACCCGTTGGTACTTCTAAGGATGAAGTACAAAATCTTTTTCCAAAGAAATATTCAGCTGAAATCCAGGCATTCTCTCGTGTCAAGAACAAACATTGTACAACATATGCTGTTTTCAAGACTATGGAAG
ATGCAGATGAAGCATTTGAGATTTTAAAAGGAGAATTAGACAAGGTAATTTCTATTTTTAAGCTACTCAGTTCCTATTTTGTATTCTTGAAACAACAAAACCACAAAACATGGTGTGTAATTCACTAGACAAAATGCTAC