NA ----> NA
Intron 1 GTATATTCTT ... GTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.72 | 152 | 1 | 35 |
| A2 | 10.34 | 104 | 0 | 12 |
| A3 | 16.67 | 80 | 0 | 16 |
| A4 | 23.08 | 70 | 1 | 21 |
| A5 | 9.09 | 20 | 0 | 2 |
| A6 | 16.78 | 124 | 0 | 25 |
| A7 | 12.46 | 281 | 0 | 40 |
| A8 | 17.22 | 274 | 1 | 57 |
| A9 | 15.16 | 235 | 0 | 42 |
| A10 | 15.66 | 307 | 0 | 57 |
>TRINITY_DN97316_c0_g1_i4 from sample A4 / Example spliced isoformATGGAATCGTTCAGCTTCGGACTGTTTGCTCCTTTTCACGTTTCTCCGACAGGACGAGAGCCCGTCCATGGACTCATTCGTTCATTCTTATGATTTAACATTTAAAGATCTAGCCCACGAGGCATCCGGGCTTTTCATCCCCCCCACGGTTATTGCAGCGAAGCGAAATTGGGTTCCCTATATAAGATATCAATCTCATC
TCCTCCGCTGATTTCTGTGTTCAGAGACCCGTCGTTTTGTTTGGCGTCAATCCTTCCGGTTTTGAAATCCCGTGGCATTTTTTTAATGGTTTGACACGGCAGCAGAAACCAGGAAGGATCAAGCCAAAATGCAATGTTACAAGATTTTTCTTAGAGCAAGCGGAAGGGTTTATCACAGAATATCACCAAGTGAGTAGGGA
GCAATTCGTTCCCGAAGGGTTTTGATATCGATAGAAACCATGTGGAAAATCACGCATCTGGCATTGTTTTTCCTATTTATTACTGTAGCTGTTGGATCGAGGATTCGGCCCTCTGATTCTGAAGTCCCGACACCTCAAATAAGGAACTCCCGGAGCTTTCTAGAAACCAAAAGCAACCAATCCGTTCCTTCTGGAAGTTC
TCCAGTAGCCAAGGGTGATGCAGATGCAAGTAAAATCCTCACCCCAGTAGAGGGAACCCAACACGGGCCTCATAAAAGAGAGGAGGAAAAACCAATTCCCGAAAAGAGAGATGTCAAGAACACGGTAGACACAAAGAATAATACACCCTTTATTGTTCCAGCTGCTCCTGATAACAATACTTCCACAAACAAAACTAAAA
GCGACGGGAATAAACCATCTGATCAACCATCAAAAGTGGAAAACAACATGCCACCTGATGGAAATTCAAAACAAGATAAGTCAGATGAGCATAAGCCCAATGAATCAGAGATTAACAGGAATGGCACGCCTCCCATCGAAAAGCCAAAGGACGATTTCGGTTCAGCGAGGGAGAAAATTGAAAATAACAATACTATACCC
AGAGTCGAGGATTCAACACCTCTAGCCAAACACGAGGAATCCAAGGGTCAACCGCATAATGATACCATGCGCTCTCCTCCTCCTCCAGGGAAGAAGAGTGAATCTTCCGATACCCAAACGAAAGACAAAGGCGCAGGAGGGAAGGAGGAGCCTTCACCTGACAAGAACAAGGACAGGGGCCCTACACCTAATGAGATCTG
TGAAAAAGATCATAGTTGTGAAGACAATAAAAACATGACTGCTTGTCTGCGAGCTGCTGGAAATGAAATGCAGGAACTATCACTTCTCATTCAAAATAATGGAGATGATGTTTTGCATGTGAACATTGAAGCTCCAGCATTTCTCAAAGTTAATCCTTTGGTTTTAACCTTGGAGAAACAAACAAGAAAAACGGTCCAGG
TTTTAATAGTTGACCAAGATATAAAAAATGTGAACCTTCCTAAAATAGTTATCAATGCGGGTAATGGGGAATGTACGCTCGATGTACCTAATCAGCCACTTCATTCACTAGACAAGCGAAGTTTCTTTGAAGGTTTTTCATATTCAGCTATGATCACACCAATATTTGGTGTCTATTTGTTAATCTTCACTGTTCTGGCT
ATTGGTGGAACCTGGATGTTTTGTAAGTTTCGCGGAAGGAGACGACATGGTGATAGCATTAGATACCAGGAACTTGAAATGAGCCTTCCGGAGACAAATTTGCCAGTGTCTGTTGGAGGAAAGCCTGATGTAGATACTGATGGGTGGGATGAAGTATGGGATGATAATTGGGAAGATGCTGAAGCTGCAAGATCATCCTC
GAGGACAATCCAAAGTTTGTCGTCAAAGGGTCTTGCTGCTAGGAGGACAAATAAAGACGGTTGGGATAATGCATGGGATGATTAGTCCTGGAAAAATATCTTTCTTTGGAGTTTAGTTTGAAGTCCTAATTTTGTTCCAGTCTGAATTTTCTTTTGATAGGCATGCATTTTTATTAGTCGTCATGGTTAACTGTCATTTA
ATATAGATGGTCCTCTCATGGTTCCATCTAATTGTATTTTTGTGTGAGTTATCTATAGTTGAAATTCGGGTCTGAAGTTCATATATGCATGCCATGTTCTTGTTGGTTTGTGTCTGCACATTAACACGCTGCAATGGATGTGATTTAAAATTCTCAAGGCAGAGTTGTGAGAGTTTTTCACAAGGACGAGAATCCTGGCA
CTTAAAGTTTAGGTTATTCCTATAAAAATGTATGTGTAAACTCATTGGAAATTGAGGCTATACAGTTTACAACCCATGTCAAATTTCAACTTGTAAAAGAAAAGATGGCTTATTGGTGTCAGCTTACTGTGGAGGTTTATTTCATGCTCTTATGTAAATCAGTCCTTGGTCTCCTCTCAAAGGCATGAAGATAAAGGGCA
TGAAAATCAGGAGACGTGTCACCTGCTATTTCTCATGTCACAGTGGCTGATGTCAATTTGCTTTCAGCACCC
>TRINITY_DN97316_c0_g1_i3 from sample A4 / Example unspliced isoform:GAGAAACAAACAAGAAAAACGgtatattctttctcatttaattagtattgtctcattctttagattagtaatttctctgcattggagtaaattatttgacccttgtatggcaatttatgtgtatgaacctttttgtaaagttacatgattgccttagaaattctaggaaaagggggcatcctaatgaaaactgtttttac
agGTCCAGGTTTTAATAGTTGACCAAGATATAAAAAATGTGAACCTTCCTAAAATAGTTATCAATGCGGGTAATGGGGAATGTACGCTCGATGTACCTAATCAGCCACTTCATTCACTAGACAAGCGAAGTTTCTTTGAAGGTTTTTCATATTCAGCTATGATCACACCAATATTTGGTGTCTATTTGTTAATCTTCACT
GTTCTGGCTATTGGTGGAACCTGGATGTTTTGTAAGTTTCGCGGAAGGAGACGACATGGTGATAGCATTAGATACCAGGAACTTGAAATGAGCCTTCCGGAGACAAATTTGCCAGTGTCTGTTGGAGGAAAGCCTGATGTAGATACTGATGGGTGGGATGAAGTATGGGATGATAATTGGGAAGATGCTGAAGCTGCAAG
ATCATCCTCGAGGACAATCCAAAGTTTGTCGTCAAAGGGTCTTGCTGCTAGGAGGACAAATAAAGACGGTTGGGATAATGCATGGGATGATTAGTCCTGGAAAAATATCTTTCTTTGGAGTTTAGTTTGAAGTCCTAATTTTGTTCCAGTCTGAATTTTCTTTTGATAGGCATGCATTTTTATTAGTCGTCATGGTTAAC
TGTCATTTAATATAGATGGTCCTCTCATGGTTCCATCTAATTGTATTTTTGTGTGAGTTATCTATAGTTGAAATTCGGGTCTGAAGTTCATATATGCATGCCATGTTCTTGTTGGTTTGTGTCTGCACATTAACACGCTGCAATGGATGTGATTTAAAATTCTCAAGGCAGAGTTGTGAGAGTTTTTCACAAGGACGAGA
ATCCTGGCACTTAAAGTTTAGGTTATTCCTATAAAAATGTATGTGTAAACTCATTGGAAATTGAGGCTATACAGTTTACAACCCATGTCAAATTTCAACTTGTAAAAGAAAAGATGGCTTATTGGTGTCAGCTTACTGTGGAGGTTTATTTCATGCTCTTATGTAAATCAGTCCTTGGTCTCCTCTCAAAGGCATGAAGA
TAAAGGGCATGAAAATCAGGAGACGTGTCACCTGCTATTTCTCATGTCACAGTGGCTGATGTCAATTTGCTTTCAGCACCC
Intron 2 GTAATAAAGG ... TTATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 20 | 18 | 21 |
| A2 | 48.15 | 14 | 13 | 0 |
| A3 | 52.5 | 19 | 21 | 4 |
| A4 | 41.94 | 18 | 13 | 3 |
| A5 | 31.58 | 13 | 6 | 4 |
| A6 | 46.49 | 99 | 86 | 20 |
| A7 | 48.11 | 96 | 89 | 6 |
| A8 | 46.08 | 165 | 141 | 18 |
| A9 | 46.07 | 103 | 88 | 7 |
| A10 | 41.57 | 52 | 37 | 10 |
>TRINITY_DN113004_c0_g1_i1 from sample A1 / Example spliced isoformAGGAATCTCAAGCGTGATCCCATGGAATCGTTCAGCTTCGGACTGTTTGCTCCTTTTCACGTTTCTCCGACAGGACGAGAGCCCGTCCATGGACTCATTCGTTCATTCTTATGATTTAACATTTAAAGATCTAGCCCACGAGGCATCCGGGCTTTTCATCCCCCCCACGGTTATTGCAGCGAAGCGAAATTGGGTTCCCT
ATATAAGATATCAATCTCATCTCCTCCGCTGATTTCTGTGTTCAGAGACCCGTCGTTTTGTTTGGCGTCAATCCTTCCGGTTTTGAAATCCCGTGGCATTTTTTTAATGGTTTGACACGGCAGCAGAAACCAGGAAGGATCAAGCCAAAATGCAATGTTACAAGATTTTTCTTAGAGCAAGCGGAAGGGTTTATCACAGA
ATATCACCAAGTGAGTAGGGAGCAATTCGTTCCCGAAGGGTTTTGATATCGATAGAAACCATGTGGAAAATCACGCATCTGGCATTGTTTTTCCTATTTATTACTGTAGCTGTTGGATCGAGGATTCGGCCCTCTGATTCTGAAGTCCCGACACCTCAAATAAGGAACTCCCGGAGCTTTCTAGAAACCAAAAGCAACCA
ATCCGTTCCTTCTGGAAGTTCTCCAGTAGCCAAGGGTGATGCAGATGCAAGTAAAATCCTCACCCCAGTAGAGGGAACCCAACACGGGCCTCATAAAAGAGAGGAGGAAAAACCAATTCCCGAAAAGAGAGATGTCAAGAACACGGTAGACACAAAGAATAATACACCCTTTATTGTTCCAGCTGCTCCTGATAACAATA
CTTCCACAAACAAAACTAAAAGCGACGGGAATAAACCATCTGATCAACCATCAAAAGTGGAAAACAACATGCCACCTGATGGAAATTCAAAACAAGATAAGTCAGATGAGCATAAGCCCAATGAATCAGAGATTAACAGGAATGGCACGCCTCCCATCGAAAAGCCAAAGGACGATTTCGGTTCAGCGAGGGAGAAAATT
GAAAATAACAATACTATACCCAGAGTCGAGGATTCAACACCTCTAGCCAAACACGAGGAATCCAAGGGTCAACCGCATAATGATACCATGCGCTCTCCTCCTCCTCCAGGGAAGAAGAGTGAATCTTCCGATACCCAAACGAAAGACAAAGGCGCAGGAGGGAAGGAGGAGCCTTCACCTGACAAGAACAAGGACAGGGG
CCCTACACCTAATGAGATCTGTGAAAAAGATCATAGTTGTGAAGACAATAAAAACATGACTGCTTGTCTGCGAGCTGCTGGAAATGAAATGCAGGAACTATCACTTCTCATTCAAAATAATGGAGATGATGTTTTGCATGTGAACATTGAAGCTCCAGCATTTCTCAAAGTTAATCCTTTGGTTTTAACCTTGGAGAAAC
AAACAAGAAAAACGGTCCAGGTTTTAATAGTTGACCAAGATATAAAAAATGTGAACCTTCCTAAAATAGTTATCAATGCGGGTAATGGGGAATGTACGCTCGATGTACCTAATCAGCCACTTCATTCACTAGACAAGCGAAGTTTCTTTGAAGGTTTTTCATATTCAGCTATGATCACACCAATATTTGGTGTCTATTTG
TTAATCTTCACTGTTCTGGCTATTGGTGGAACCTGGATGTTTTGTAAGTTTCGCGGAAGGAGACGACATGGTGATAGCATTAGATACCAGGAACTTGAAATGAGCCTTCCGGAGACAAATTTGCCAGTGTCTGTTGGAGGAAAGCCTGATGTAGATACTGATGGGTGGGATGAAGTATGGGATGATAATTGGGAAGATGC
TGAAGCTGCAAGATCATCCTCGAGGACAATCCAAAGTTTGTCGTCAAAGGGTCTTGCTGCTAGGAGGACAAATAAAGACGGTTGGGATAATGCATGGGATGATTAGTCCTGGAAAAATATCTTTCTTTGGAGTTTAGTTTGAAGTCCTAATTTTGTTCCAGTCTGAATTTTCTTTTGATAGGCATGCATTTTTATTAGTC
GTCATGGTTAACTGTCATTTAATATAGATGGTCCTCTCATGGTTCCATCTAATTGTATTTTTGTGTGAGTTATCTATAGTTGAAATTCGGGTCTGAAGTTCATATATGCATGCCATGTTCTTGTTGGTTTGTGTCTGCACATTAACACGCTGCAATGGATGTGATTTAAAATTCTCAAGGCAGAGTTGTGAGAGTTTTTC
ACAAGGACGAGAATCCTGGCACTTAAAGTTTAGGTTATTCCTATAAAAATGTATGTGTAAACTCATTGGAAATTGAGGCTATACAGTTTACAACCCATGTCAAATTTCAACTTGTAAAAGAAAAGATGGCTTATTGGTGTCAGCTTACTGTGGAGGTTTATTTCATGCTCTTATGTAAATCAGTCCTTGGTCTCCTCTCA
AAGGCATGAAGATAAAGGGCATGAAAATCAGGAGACGTGTCACCTGCTATTTCTCATGTCACAGTGGCTGATGTCAATTTGCTTTCAGCACCCAAATAGTGCTGTGTGCAATTTATCTTCAGTTTCCTCGAGTTATTTTTGCAATTGGAGGAGATAGTTACATCCAGTTCTTCCATTTGGGAGTCAGTGTACTGCTGTTT
TATTGTATGTGAGACATACAGGTTGGGACTGGTGGCTCAGGATGGCTGTTGGGACTTTGATGATCGGTCTTCAATCTAATTGTAAGATGCTTACTTTGTTATAGTTAGATGAGAGTGGTATGCCTTTTGTTCATGAAGGAAATAAGGCTAATGATATTCATTTTGCTTAACCTGGTATGATGGTATCAATAATGCCATAG
AAAATATAGGAACTGATAAGTAATGAAAAACTGAGGGCTCAGGAATCCATGGAGATACGTGGGATGTGATAGGCAAGGACAAGTCTACTTCTGCATGTGTCCAGAATTCGTATAACCTATAGTGAGGTTAGGACACAAACATCATAGAAAATGAATCGAGTGAGACTAATTATGATGGTAGTCTGTTTTTTTTCTCTAGT
GTCACACCAAGAACATTACAAATTGAAGCAGAGGGACTTCTTTTCATGCTGCTATTGATTTCATAGTGTGGTT
>TRINITY_DN113004_c0_g1_i2 from sample A1 / Example unspliced isoform:AGGAATCTCAAGCGTGATCCCATGGAATCGTTCAGCTTCGGACTGTTTGCTCCTTTTCACGTTTCTCCGACAGGACGAGAGCCCGTCCATGGACTCATTCGTTCATTCTTATGATTTAACATTTAAAGATCTAGCCCACGAGGCATCCGGGCTTTTCATCCCCCCCACGGTTATTGCAGCGAAGCGAAATTGGGTTCCCT
ATATAAGATATCAATCTCATCTCCTCCGCTGATTTCTGTGTTCAGAGACCCGTCGTTTTGTTTGGCGTCAATCCTTCCGGTTTTGAAATCCCGTGGCATTTTTTTAATGGTTTGACACGGCAGCAGAAACCAGGAAGGATCAAGCCAAAATGCAATGTTACAAGATTTTTCTTAGAGCAAGCGGAAGGGTTTATCACAGA
ATATCACCAAGTGAGTAGGGAGCAATTCGTTCCCGAAGGGTTTTGATATCGATAGAAACCATGTGGAAAATCACGCATCTGGCATTGTTTTTCCTATTTATTACTGTAGCTGTTGGATCGAGGATTCGGCCCTCTGATTCTGAAGTCCCGACACCTCAAATAAGGAACTCCCGGAGCTTTCTAGAAACCAAAAGCAACCA
ATCCGTTCCTTCTGGAAGTTCTCCAGTAGCCAAGGGTGATGCAGATGCAAGTAAAATCCTCACCCCAGTAGAGGGAACCCAACACGGGCCTCATAAAAGAGAGGAGGAAAAACCAATTCCCGAAAAGAGAGATGTCAAGAACACGGTAGACACAAAGAATAATACACCCTTTATTGTTCCAGCTGCTCCTGATAACAATA
CTTCCACAAACAAAACTAAAAGCGACGGGAATAAACCATCTGATCAACCATCAAAAGTGGAAAACAACATGCCACCTGATGGAAATTCAAAACAAGATAAGTCAGATGAGCATAAGCCCAATGAATCAGAGATTAACAGGAATGGCACGCCTCCCATCGAAAAGCCAAAGGACGATTTCGGTTCAGCGAGGGAGAAAATT
GAAAATAACAATACTATACCCAGAGTCGAGGATTCAACACCTCTAGCCAAACACGAGGAATCCAAGGGTCAACCGCATAATGATACCATGCGCTCTCCTCCTCCTCCAGGGAAGAAGAGTGAATCTTCCGATACCCAAACGAAAGACAAAGGCGCAGGAGGGAAGGAGGAGCCTTCACCTGACAAGAACAAGGACAGGGG
CCCTACACCTAATGAGATCTGTGAAAAAGATCATAGTTGTGAAGACAATAAAAACATGACTGCTTGTCTGCGAGCTGCTGGAAATGAAATGCAGGAACTATCACTTCTCATTCAAAATAATGGAGATGATGTTTTGCATGTGAACATTGAAGCTCCAGCATTTCTCAAAGTTAATCCTTTGGTTTTAACCTTGGAGAAAC
AAACAAGAAAAACGGTCCAGGTTTTAATAGTTGACCAAGATATAAAAAATGTGAACCTTCCTAAAATAGTTATCAATGCGGGTAATGGGGAATGTACGCTCGATGTACCTAATCAGCCACTTCATTCACTAGACAAGCGAAGTTTCTTTGAAGGTTTTTCATATTCAGCTATGATCACACCAATATTTGGTGTCTATTTG
TTAATCTTCACTGTTCTGGCTATTGGTGGAACCTGGATGTTTTGTAAGTTTCGCGGAAGGAGACGACATGGTGATAGCATTAGATACCAGGAACTTGAAATGAGCCTTCCGGAGACAAATTTGCCAGTGTCTGTTGGAGGAAAGCCTGATGTAGATACTGATGGGTGGGATGAAGTATGGGATGATAATTGGGAAGATGC
TGAAGCTGCAAGATCATCCTCGAGGACAATCCAAAGTTTGTCGTCAAAGGGTCTTGCTGCTAGGAGGACAAATAAAGACGGTTGGGATAATGCATGGGATGATTAGTCCTGGAAAAATATCTTTCTTTGGAGTTTAGTTTGAAGTCCTAATTTTGTTCCAGTCTGAATTTTCTTTTGATAGGCATGCATTTTTATTAGTC
GTCATGGTTAACTGTCATTTAATATAGATGGTCCTCTCATGGTTCCATCTAATTGTATTTTTGTGTGAGTTATCTATAGTTGAAATTCGGGTCTGAAGTTCATATATGCATGCCATGTTCTTGTTGGTTTGTGTCTGCACATTAACACGCTGCAATGGATGTGATTTAAAATTCTCAAGGCAGAGTTGTGAGAGTTTTTC
ACAAGGACGAGAATCCTGGCACTTAAAGTTTAGGTTATTCCTATAAAAATGTATGTGTAAACTCATTGGAAATTGAGGCTATACAGTTTACAACCCATGTCAAATTTCAACTTGTAAAAGgtaataaaggtttactttgaagcaaattttgacagatcgtcatccagtcattttgcaattgttttactgccattatgata
ctctgaacattcctacatctagaacatgttttctcttttttatgtgcagAAAAGATGGCTTATTGGTGTCAGCTTACTGTGGAGGTTTATTTCATGCTCTTATGTAAATCAGTCCTTGGTCTCCTCTCAAAGGCATGAAGATAAAGGGCATGAAAATCAGGAGACGTGTCACCTGCTATTTCTCATGTCACAGTGGCTGA
TGTCAATTTGCTTTCAGCACCCAAATAGTGCTGTGTGCAATTTATCTTCAGTTTCCTCGAGTTATTTTTGCAATTGGAGGAGATAGTTACATCCAGTTCTTCCATTTGGGAGTCAGTGTACTGCTGTTTTATTGTATGTGAGACATACAGGTTGGGACTGGTGGCTCAGGATGGCTGTTGGGACTTTGATGATCGGTCTT
CAATCTAATTGTAAGATGCTTACTTTGTTATAGTTAGATGAGAGTGGTATGCCTTTTGTTCATGAAGGAAATAAGGCTAATGATATTCATTTTGCTTAACCTGGTATGATGGTATCAATAATGCCATAGAAAATATAGGAACTGATAAGTAATGAAAAACTGAGGGCTCAGGAATCCATGGAGATACGTGGGATGTGATA
GGCAAGGACAAGTCTACTTCTGCATGTGTCCAGAATTCGTATAACCTATAGTGAGGTTAGGACACAAACATCATAGAAAATGAATCGAGTGAGACTAATTATGATGGTAGTCTGTTTTTTTTCTCTAGTGTCACACCAAGAACATTACAAATTGAAGCAGAGGGACTTCTTTTCATGCTGCTATTGATTTCATAGTGTGG
TT