sp|Q39263|ZFP4_ARATH ----> Zinc finger protein 4

Intron 1 GCAAGATATA ... ATCCCCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	18	13
A2	57.14	3	4	4
A3	100	0	14	6
A4	73.33	2	9	2
A5	100	0	5	4
A6	84.96	20	87	139
A7	80.83	23	72	122
A8	79.94	36	108	179
A9	80.07	28	90	135
A10	76.14	21	53	81

>TRINITY_DN116868_c1_g2_i2 from sample A2 / Example spliced isoform

CTCCAATCCAATATTTCGTCTCAGAAAGATTCTATTGACGGATCCTCTGTCAATACAACTCATATGTTCTTTGAAACAGAGAATAATTCATGCAAGGCCAAACAGAAAGTTTGTTCTTCTTCGGGAAACTTGGAGAAGAATTCAAATATATCCTTAGAATTAAGCTTAGGTGGCAGTGATTTGAATGATCTGCAGACCCG
CGACCTCAAAGACCAATTTGATATCCTCTCTGGCAAAATCAATAAAGAAAGTAGTTTCATAGCAGCAGAAACTTCAGACCATGTTAAAAAGGGGTCAGAATGGGGCGAGACTGTAGTAAGTACAAGCGAAAACAGTAATGAATTGGATCCTCCTGCTCATTCTGAAACTTCTTCCCCTGCTCAAGGATCTGAGCGTCGGG
TTTTTCCCTGTAATTTCTGTCAAAGAAAATTCTACAGTTCTCAAGCATTAGGAGGTCATCAAAATGCTCATAAGCGTGAGAGAACTTTGGCTAGAAGGGCACAGAGAATGGGGTCTTTCGCACATAGATATTCAAGCATGGCATCACTTCCACTCCACGGTTCCTCGGAAACAAGCTTGATGCCCAGTCGATTTTTAGGG
ATAAAAGCACATTCCTTGATTCACAAACCACTCCCTGAAGGTGATAGCAGTTATCTGCCACAGGGACATCATGGATGGTCAATGGTTAGGTTCATGGAACATCAGATTAGTGGGAAACATGTTGCAGATGAGCTTTCGAGCAGAGTTATTAGTAGAGGGGTAGCCAGGTTTGACAATAATTACTTTGGTTTAGCTGGTGG
GGGGAGGGTGTTGGGAGGCCCCTCTGTATTTTTAGAGGAGGATGCCAATTTTGGCTGGCCGGGTAGTTTCAGAAGTCAGAAAGGAGAAGCTGGGCATATTTTCCAACCAGAAGAAAATCTGTCAACTCATGACAATTCTAATCACATTACACTACAAAATTATGTTGCTGACAGGGCGCCGCTGTCTTGCAAGGATGGCT
CCAATCCTGATTTAACTCTTCGGCTTTAATACGTTGGCTTATCAGACATACAGTTTGAGGACTAAAGTGCTGCGGGAGGGCTGTTTAAAGGCCTACAGATGAAGAAAGAGCAAAGTTAAAATTTCTAGGACGGTGATCTTTCAGAGTAGAAAGTACAATTTTACTGAAGAGCTCATTGGACAGTGACTAGACCCCATGTA
TGTTAGAGATGACTGCTGCTTGCAAAATAACTTAAAATGGC

>TRINITY_DN116868_c1_g2_i1 from sample A2 / Example unspliced isoform:

CTCCAATCCAATATTTCGTCTCAGAAAGATTCTATTGACGGATCCTCTGTCAATACAACTCATATGTTCTTTGAAACAGAGAATAATTCATGCAAGGCCAAACAGAAAGTTTGTTCTTCTTCGGGAAACTTGGAGAAGAATTCAAATATATCCTTAGAATTAAGCTTAGGTGGCAGTGATTTGAATGATCTGCAGACCCG
CGACCTCAAAGACCAATTTGATATCCTCTCTGGCAAAATCAATAAAGAAAGTAGTTTCATAGCAGCAGAAACTTCAGACCATGTTAAAAAGGGGTCAGAATGGGGCGAGACTGTAGTAAGTACAAGCGAAAACAGTAATGAATTGGATCCTCCTGCTCATTCTGAAACTTCTTCCCCTGCTCAAGGATCTGAGCGTCGGG
TTTTTCCCTGTAATTTCTGTCAAAGAAAATTCTACAGTTCTCAAGCATTAGGAGGTCATCAAAATGCTCATAAGCGTGAGAGAACTTTGGCTAGAAGGGCACAGAGAATGGGGTCTTTCGCACATAGATATTCAAGCATGGCATCACTTCCACTCCACGGTTCCTCGGAAACAAGCTTGATGCCCAGTCGATTTTTAGGG
ATAAAAGCACATTCCTTGATTCACAAACCACTCCCTGAAGGTGATAGCAGTTATCTGCCACAGGGACATCATGGATGGTCAATGGTTAGGTTCATGGAACATCAGATTAGTGGGAAACATGTTGCAGATGAGCTTTCGAGCAGAGTTATTAGTAGAGGGGTAGCCAGGTTTGACAATAATTACTTTGGTTTAGCTGGTGG
GGGGAGGGTGTTGGGAGGCCCCTCTGTATTTTTAGAGGAGGATGCCAATTTTGGCTGGCCGGGTAGTTTCAGAAGTCAGAAAGGAGAAGCTGGGCATATTTTCCAACCAGAAGAAAATCTGTCAACTCATGACAATTCTAATCACATTACACTACAAAATTATGTTGCTGACAGGGCGCCGCTGTCTTGCAAGGATGGCT
CCAATCCTGATTTAACTCTTCGGCTTTAATACGTTGGCTTATCAGACATACAGTTTGAGGACTAAAGTGCTGCGGGAGGGCTGTTTAAAGGCCTACAGATGAAGAAAGAGCAAAGTTAAAATTTCTAGGACGgcaagatatatagaagcttatgaattgtctaatttgattcggttatctactagtatttgagtggcatc
ctttcccatagctttatattgagcacattaaaccttcctgatccccgcagGTGATCTTTCAGAGTAGAAAGTACAATTTTACTGAAGAGCTCATTGGACAGTGACTAGACCCCATGTATGTTAGAGATGACTGCTGCTTGCAAAATAACTTAAAATGGC