NA ----> NA
Intron 1 GTAAACAAAA ... GGAGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 2 | 2 | 4 |
| A2 | -1 | 0 | 2 | 0 |
| A3 | 75 | 1 | 2 | 3 |
| A4 | 66.67 | 1 | 1 | 2 |
| A5 | 66.67 | 1 | 0 | 2 |
| A6 | 58.33 | 10 | 2 | 14 |
| A7 | 56.67 | 13 | 2 | 17 |
| A8 | 70 | 9 | 0 | 21 |
| A9 | 75 | 3 | 2 | 9 |
| A10 | 83.33 | 4 | 1 | 20 |
>TRINITY_DN38864_c0_g1_i6 from sample A9 / Example spliced isoformGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAATATGCGATGATTTACATGTCGAATATCATGTCCT
ACATGCATCGATCAATGCATTTGCAATGGCTAGTATACTAATGTACTTGAGTCGGAAATGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGA
TTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGT
AAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTA
CTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
>TRINITY_DN38864_c0_g1_i12 from sample A9 / Example unspliced isoform:GAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAAGTATGATATCCTCTTGTTGTAGCTTCCATATATT
GAGATTGAATTGATAAAGACCGTGACAAGGTCTTGTCGTGATTCTACTTTCTATGGCCAAATTGAACTGCAAATTTCCATCCAACGCAGAAGTTATGACAGCTATAACAAATCTTATGGTTTCTATTCTCACTGAAGATAGAATTGATGCTTTTGAAAAGCTTGAAACAATCTAATGTATGTCACATTCTCATTATAGGT
AATATGCGATGATTTACATGTCGAATATCATGGTTTGCTGTTCAGTTCTTGATATTTTTTATACTTTGAGCATGCTTTTCTTTTTCAAGGTCACAGTTCTTGATATTTTCCATATTCTGAGTATGCTTTTCTTTTTCGAAATTATAGTCCTACATGCATCGATCAATGCATTTGCAATGGCTAGTATACTAATGTACTTG
AGTCGGAAATGgtaaacaaaaacagctattttctgtagcaagatttctgtggttgttgttgatttcaggatgtctcggagaattcacagtaaatgtgttttgtaatacctgaccgcttgcctgctttcattttgagctaaacgacgctgcatgaatcttcttacggagttgcagGATTTATGCCTTTATTGAGTCACATT
TTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCT
TCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGA
GAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
Intron 2 GTAAGTATGA ... CTCATTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 4 | 7 | 1 |
| A2 | 100 | 0 | 6 | 1.5 |
| A3 | 32.14 | 3.5 | 1 | 0.8 |
| A4 | 100 | 0 | 2 | 0.8 |
| A5 | 40 | 3 | 2 | 0 |
| A6 | 43.24 | 15.8 | 11.8 | 2.3 |
| A7 | 48.21 | 7.8 | 7 | 1.5 |
| A8 | 39.07 | 9.8 | 6.3 | 8 |
| A9 | 16.8 | 5.8 | 1 | 1.3 |
| A10 | 50.06 | 9.8 | 9.8 | 0 |
>TRINITY_DN40998_c0_g1_i8 from sample A6 / Example spliced isoformGGAAAACAGGAAACACAGCAAATGCTTGATCTATAAAATTAAGTCTAGGTTTTGGTTTTGTGGGATCTCGTGCAAGCCGCAGCGTCATGCGGATCCCGCGCATATGCTTTTTACAGCCAATTAATGCAATATCTGCACATTTACTTTTAGAGGCAATTAAGGTTCCGTGTTCTTTCTAATTTTGTTCATGTACAGTAGGG
AGAGAGAGGGCAATAATAAGAAGAGAAGGGGGGTTGTTGCTTCCTGCTCATTGCATTGCATGGGACATCGAGAAGAATTGTGTTTATTCGCAGGTACCGCCTGCACGGTTCGCAGCAACAGTGTTGAAGATAAGAGACCTGAACGGCTAGAGAGATCTGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCT
GAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCA
CACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGT
CCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTG
CGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGAT
GAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAATATGCGATGATTTACATGTCGAATATCATGGTTTGCTGTTCAGTTCTTGATATTTTTT
ATACTTTGAGCATGCTTTTCTTTTTCAAGGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATT
GCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGT
CTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTT
CTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGC
>TRINITY_DN40998_c0_g1_i24 from sample A6 / Example unspliced isoform:GGAAAACAGGAAACACAGCAAATGCTTGATCTATAAAATTAAGTCTAGGTTTTGGTTTTGTGGGATCTCGTGCAAGCCGCAGCGTCATGCGGATCCCGCGCATATGCTTTTTACAGCCAATTAATGCAATATCTGCACATTTACTTTTAGAGGCAATTAAGGTTCCGTGTTCTTTCTAATTTTGTTCATGTACAGTAGGG
AGAGAGAGGGCAATAATAAGAAGAGAAGGGGGGTTGTTGCTTCCTGCTCATTGCATTGCATGGGACATCGAGAAGAATTGTGTTTATTCGCAGGTACCGCCTGCACGGTTCGCAGCAACAGTGTTGAAGATAAGAGACCTGAACGGCTAGAGAGATCTGGTATTCATTTTTTTAAAACTGTGCTGCACATGTAGTAAGTC
CCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGT
GGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCAT
CTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGA
GAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAA
TGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTgtaagtatgatatcc
tcttgttgtagcttccatatattgagattgaattgataaagaccgtgacaaggtcttgtcgtgattctactttctatggccaaattgaactgcaaatttccatccaacgcagaagttatgacagctataacaaatcttatggtttctattctcactgaagatagaattgatgcttttgaaaagcttgaaacaatctaatg
tatgtcacattctcattatagGTAATATGCGATGATTTACATGTCGAATATCATG
Intron 3 GTAAGTATGA ... TTGATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.94 | 4 | 7 | 2 |
| A2 | 100 | 0 | 6 | 2 |
| A3 | 33.33 | 5 | 1 | 4 |
| A4 | 60 | 1 | 2 | 1 |
| A5 | 33.33 | 3 | 2 | 1 |
| A6 | 41.18 | 10 | 11 | 3 |
| A7 | 42.86 | 6 | 7 | 2 |
| A8 | 28.57 | 10 | 6 | 2 |
| A9 | 27.27 | 4 | 1 | 2 |
| A10 | 37.5 | 10 | 10 | 2 |
>TRINITY_DN38864_c0_g1_i2 from sample A9 / Example spliced isoformGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGATGTCTCGGAGAATTCACAGTAAATGTGT
TTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTC
TCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAG
ATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACA
TTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
>TRINITY_DN38864_c0_g1_i12 from sample A9 / Example unspliced isoform:GAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTgtaagtatgatatcctcttgttgtagcttccatatatt
gagattgaattgataaagaccgtgacaaggtcttgtcgtgattctactttctatggccaaattgaactgcaaatttccatccaacgcagaagttatgacagctataacaaatcttatggtttctattctcactgaagatagaattgatgcttttgaaaagcttgaaacaatctaatgtatgtcacattctcattataggt
aatatgcgatgatttacatgtcgaatatcatggtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaaggtcacagttcttgatattttccatattctgagtatgcttttctttttcgaaattatagtcctacatgcatcgatcaatgcatttgcaatggctagtatactaatgtacttg
agtcggaaatggtaaacaaaaacagctattttctgtagcaagatttctgtggttgttgttgatttcagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATT
TTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCT
TCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGA
GAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
Intron 4 GTAATATGCG ... CTTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 4 | 4 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 60 | 5 | 6 | 9 |
| A4 | 33.33 | 1 | 0 | 1 |
| A5 | 40 | 3 | 3 | 1 |
| A6 | 58.46 | 10 | 19.2 | 9 |
| A7 | 47.83 | 6 | 8 | 3 |
| A8 | 37.88 | 10 | 9.2 | 3 |
| A9 | 61.9 | 4 | 8 | 5 |
| A10 | 33.33 | 10 | 9 | 1 |
>TRINITY_DN42142_c0_g1_i6 from sample A7 / Example spliced isoformCACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCT
GATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACAT
TTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAAT
TTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGATGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGT
CATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTG
GCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACA
>TRINITY_DN42142_c0_g1_i2 from sample A7 / Example unspliced isoform:CACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCT
gtaatatgcgatgatttacatgtcgaatatcatggtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGAT
TTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTT
TCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTG
ATTTTTCTGAAAAGTCATTCTGATGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTAT
GAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACA
Intron 5 GTCACAGTTC ... TTGATTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 2 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 30.77 | 9 | 0 | 4 |
| A4 | 50 | 1 | 1 | 1 |
| A5 | 50 | 1 | 0 | 1 |
| A6 | 25 | 9 | 0 | 3 |
| A7 | 40 | 3 | 1 | 2 |
| A8 | 40 | 3 | 1 | 2 |
| A9 | 28.57 | 5 | 2 | 2 |
| A10 | 66.67 | 1 | 0 | 2 |
>TRINITY_DN38864_c0_g1_i11 from sample A9 / Example spliced isoformGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAATATGCGATGATTTACATGTCGAATATCATGGTTT
GCTGTTCAGTTCTTGATATTTTTTATACTTTGAGCATGCTTTTCTTTTTCAAGGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGG
TTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCC
GTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCC
AATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
>TRINITY_DN38864_c0_g1_i12 from sample A9 / Example unspliced isoform:GAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAAGTATGATATCCTCTTGTTGTAGCTTCCATATATT
GAGATTGAATTGATAAAGACCGTGACAAGGTCTTGTCGTGATTCTACTTTCTATGGCCAAATTGAACTGCAAATTTCCATCCAACGCAGAAGTTATGACAGCTATAACAAATCTTATGGTTTCTATTCTCACTGAAGATAGAATTGATGCTTTTGAAAAGCTTGAAACAATCTAATGTATGTCACATTCTCATTATAGGT
AATATGCGATGATTTACATGTCGAATATCATGGTTTGCTGTTCAGTTCTTGATATTTTTTATACTTTGAGCATGCTTTTCTTTTTCAAGgtcacagttcttgatattttccatattctgagtatgcttttctttttcgaaattatagtcctacatgcatcgatcaatgcatttgcaatggctagtatactaatgtacttg
agtcggaaatggtaaacaaaaacagctattttctgtagcaagatttctgtggttgttgttgatttcagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATT
TTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCT
TCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGA
GAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
Intron 6 GTAATATGCG ... GGAGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 6 | 4 | 4 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 50 | 2 | 1 | 3 |
| A4 | 50 | 1 | 0 | 2 |
| A5 | 45.45 | 3 | 3 | 2 |
| A6 | 41.18 | 20 | 14 | 14 |
| A7 | 43.75 | 18 | 10 | 18 |
| A8 | 47.69 | 17 | 10 | 21 |
| A9 | 75 | 2 | 3 | 9 |
| A10 | 51.72 | 14 | 10 | 20 |
>TRINITY_DN40368_c0_g2_i1 from sample A10 / Example spliced isoformGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCC
ATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTA
GAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTA
AATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGATTTATGCCTTTATTGAGTC
ACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCT
TTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGA
>TRINITY_DN40368_c0_g2_i2 from sample A10 / Example unspliced isoform:GTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCC
ATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTA
GAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTA
AATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTgtaatatgcgatgatttacat
gtcgaatatcatggatgtctcggagaattcacagtaaatgtgttttgtaatacctgaccgcttgcctgctttcattttgagctaaacgacgctgcatgaatcttcttacggagttgcagGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTT
TATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTAT
GCTAAAGACAAATTTAAAGGGA
Intron 7 GTAAGTATGA ... CTTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.67 | 4 | 7 | 0 |
| A2 | 100 | 0 | 6 | 0 |
| A3 | 44.44 | 5 | 1 | 7 |
| A4 | 60 | 1 | 2 | 1 |
| A5 | 33.33 | 3 | 2 | 1 |
| A6 | 48.72 | 10 | 11 | 8 |
| A7 | 42.86 | 6 | 7 | 2 |
| A8 | 31.03 | 10 | 6 | 3 |
| A9 | 27.27 | 4 | 1 | 2 |
| A10 | 35.48 | 10 | 10 | 1 |
>TRINITY_DN42142_c0_g1_i6 from sample A7 / Example spliced isoformCACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCT
GATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACAT
TTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAAT
TTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGATGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGT
CATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTG
GCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACA
>TRINITY_DN42142_c0_g1_i5 from sample A7 / Example unspliced isoform:CACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTgtaagtat
gatatcctcttgttgtagcttccatatattgagattgaattgataaagaccgtgacaaggtcttgtcgtgattctactttctatggccaaattgaactgcaaatttccatccaacgcagaagttatgacagctataacaaatcttatggtttctattctcactgaagatagaattgatgcttttgaaaagcttgaaacaa
tctaatgtatgtcacattctcattataggtaatatgcgatgatttacatgtcgaatatcatggtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTG
CATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTT
GTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTC
Intron 8 GTTTGCTGTT ... TTGATTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | 100 | 0 | 2 | 2 |
| A3 | 50 | 2 | 0 | 4 |
| A4 | 50 | 1 | 1 | 1 |
| A5 | 20 | 2 | 0 | 1 |
| A6 | 42.86 | 2 | 0 | 3 |
| A7 | 25 | 6 | 2 | 2 |
| A8 | 33.33 | 7 | 5 | 2 |
| A9 | 33.33 | 2 | 0 | 2 |
| A10 | 33.33 | 2 | 0 | 2 |
>TRINITY_DN38864_c0_g1_i9 from sample A9 / Example spliced isoformGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAATATGCGATGATTTACATGTCGAATATCATGGATG
TCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTG
AGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAA
AGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTAC
GCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
>TRINITY_DN38864_c0_g1_i12 from sample A9 / Example unspliced isoform:GAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAAGTATGATATCCTCTTGTTGTAGCTTCCATATATT
GAGATTGAATTGATAAAGACCGTGACAAGGTCTTGTCGTGATTCTACTTTCTATGGCCAAATTGAACTGCAAATTTCCATCCAACGCAGAAGTTATGACAGCTATAACAAATCTTATGGTTTCTATTCTCACTGAAGATAGAATTGATGCTTTTGAAAAGCTTGAAACAATCTAATGTATGTCACATTCTCATTATAGGT
AATATGCGATGATTTACATGTCGAATATCATGgtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaaggtcacagttcttgatattttccatattctgagtatgcttttctttttcgaaattatagtcctacatgcatcgatcaatgcatttgcaatggctagtatactaatgtacttg
agtcggaaatggtaaacaaaaacagctattttctgtagcaagatttctgtggttgttgttgatttcagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATT
TTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCT
TCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGA
GAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
Intron 9 GTTTGCTGTT ... GAAATTATAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 100 | 0 | 1 | 1 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 50 | 1 | 2 | 0 |
| A8 | 38.46 | 4 | 5 | 0 |
| A9 | 33.33 | 4 | 0 | 4 |
| A10 | 14.29 | 3 | 0 | 1 |
>TRINITY_DN38864_c0_g1_i6 from sample A9 / Example spliced isoformGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAATATGCGATGATTTACATGTCGAATATCATGTCCT
ACATGCATCGATCAATGCATTTGCAATGGCTAGTATACTAATGTACTTGAGTCGGAAATGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGA
TTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGT
AAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTA
CTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
>TRINITY_DN38864_c0_g1_i12 from sample A9 / Example unspliced isoform:GAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTCTTTTTTTGAGTCTGTGGAGGCCGCGCCTCG
ATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAGTGTCTCCTTCTCCATCTCCAGTCGGCCGCT
GTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCTGGTCCCCGGCGTAGAGAAATCATGTCGGAG
GCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAATATAGTAAGAATTAAATGCGCGCCCTCGTTT
AGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCTGTAAGTATGATATCCTCTTGTTGTAGCTTCCATATATT
GAGATTGAATTGATAAAGACCGTGACAAGGTCTTGTCGTGATTCTACTTTCTATGGCCAAATTGAACTGCAAATTTCCATCCAACGCAGAAGTTATGACAGCTATAACAAATCTTATGGTTTCTATTCTCACTGAAGATAGAATTGATGCTTTTGAAAAGCTTGAAACAATCTAATGTATGTCACATTCTCATTATAGGT
AATATGCGATGATTTACATGTCGAATATCATGgtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaaggtcacagttcttgatattttccatattctgagtatgcttttctttttcgaaattatagTCCTACATGCATCGATCAATGCATTTGCAATGGCTAGTATACTAATGTACTTG
AGTCGGAAATGGTAAACAAAAACAGCTATTTTCTGTAGCAAGATTTCTGTGGTTGTTGTTGATTTCAGGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATT
TTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCT
TCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGA
GAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACATAAAAA
Intron 10 GTTTGCTGTT ... CTTTTTCAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0.5 | 0 |
| A3 | 78.75 | 2 | 6.5 | 8.5 |
| A4 | 37.5 | 1 | 0.3 | 1 |
| A5 | 30 | 2 | 0.8 | 1 |
| A6 | 81.1 | 2 | 8.5 | 8.8 |
| A7 | 37.35 | 6 | 4.5 | 2.8 |
| A8 | 35.09 | 6.5 | 4 | 3 |
| A9 | 69.85 | 2 | 6.5 | 4.3 |
| A10 | 20 | 2 | 0 | 1 |
>TRINITY_DN42142_c0_g1_i8 from sample A7 / Example spliced isoformCACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCT
GTAATATGCGATGATTTACATGTCGAATATCATGGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGATTTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACG
GAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTTTCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGA
ACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGATGACTTTCGTAGATGATTATGTCTCTGTAAAGAG
AGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTATGAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTC
ATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACA
>TRINITY_DN42142_c0_g1_i2 from sample A7 / Example unspliced isoform:CACATGTAGTAAGTCCCCATGATCTGAGAAGAGTGCATTTCCTGTTCTTCAGATCTTCACCTGAGGCCCTTTTTCTTGGATATGTAGTTCCAGACTATGTGCTGGTGCTCCGTTAATGGCGGACTGACTTCTGGCAGATCCACTGGTCGATTCTTCGGAGGACCTTATATGCACCGATTGAGTCTTTATTTTCCGAGTTC
TTTTTTTGAGTCTGTGGAGGCCGCGCCTCGATCTGTTGAGTGCTGACAGAAGAGAGTGAGCACACATAGCAGGAGCTCATGAGACTATGAGTTCAGCCATGCGTGCTCACGTCTCTTTCTGTCAGCGGCTCATCGGGAGCGATCTCAGGCTTTAGGTTCCTTCCCCTCCTGTGACCCTAAATAATTTGTTCAAAACAAAG
TGTCTCCTTCTCCATCTCCAGTCGGCCGCTGTAAAGTTTCCTAAAGAATGCCCCGTGGAAGTCCTATTCATTCACTATAGCGCGCTCTGCTGCAAAAGGCCAGACAATGGGAGAATCGGGAGTCGGGAAATGATGTTACTGAGGCAAGCACGCTTCTCGAATTGCTACAACTCCATGGCACTCCCTTCAGAGGTCTCTCT
GGTCCCCGGCGTAGAGAAATCATGTCGGAGGCGTATCTTCTGGCCCTGCGGGTGAAGTATTGCGGTTCCATTCACGGCAGCTCGACCAGGGCCTCTGAAATTTGAGCATTTGAGATCCGAGCGGGCCGCTCAGATGTATTTTGATTTGTTTCGGTTTTCTTTGGACGGTTTAGGGCAGGGCAGTGGAGAATTGAATGAAT
ATAGTAAGAATTAAATGCGCGCCCTCGTTTAGTGCACCGGCACTCAAAGCGAGATTATGGATGAAACTTGATGAAGATATCTTTGAACTAGGCAGTGAAAGGTTCGAACGCTGCTGGAGTTTTGGCACGGCATAGGGTTGCAGTAGAGGAGCTCCTGGTTAAGGACTAATGCGACTGCGAAACAAGGGACATTCAGCTCT
GTAATATGCGATGATTTACATGTCGAATATCATGgtttgctgttcagttcttgatattttttatactttgagcatgcttttctttttcaagGATGTCTCGGAGAATTCACAGTAAATGTGTTTTGTAATACCTGACCGCTTGCCTGCTTTCATTTTGAGCTAAACGACGCTGCATGAATCTTCTTACGGAGTTGCAGGAT
TTATGCCTTTATTGAGTCACATTTTGAGCCAAAAAAGGTTTCGTGAATCTTCTCACGGAGTTGCAGGATTTATGCCTTTATTGAATCACATTTTGAGCCGAACAAGCATGCATGAATCTTCTCACGGAATTGCAGGATTTATGCCTTTATTGGATCACTTCACGCTATGCTTGTTAAGCTGTGAAAGGAATCTTTCCTTT
TCTATTTCTTAATATTCTTTTCTTCTCTATCCGATTCCGTGCTGTCAATGTGAGTGAACTTTTTGTATCCTTGCTTATGCTAAAGACAAATTTAAAGGGAAAGTTCGAGTGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTG
ATTTTTCTGAAAAGTCATTCTGATGACTTTCGTAGATGATTATGTCTCTGTAAAGAGAGTGCTGGAATTAATACTTGTTTCATCCATCAGTCATCATCGGAAGGCACCGACTTGATTTTTCTGAAAAGTCATTCTGAGAAACTAGAATTTCCAATAACGAGTTCAATATGGAGACGAAATCCTTGGTTCCTTAGATGTAT
GAGAATTACGCAATTTTTATTTAGATATGGTTACATTGTTAGCTTCTTTTACTGGTCATTGGCTGGAAAAGCACATGCATGTACTTATCTGGCTGTTTAAACGTTAGAATAAAGTAATCTGCATTAACA