sp|Q8VZF1|AEE7_ARATH ----> Acetate/butyrate--CoA ligase AAE7, peroxisomal

Intron 1 GTAAGCGTCT ... ATATGAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	23	13	10
A2	47.06	9	10	6
A3	45.76	16	11	16
A4	40.91	13	10	8
A5	25	6	0	4
A6	15.15	14	0	5
A7	26.92	19	4	10
A8	18.52	11	2	3
A9	18.92	15	0	7
A10	38.78	15	11	8

>TRINITY_DN103348_c2_g4_i3 from sample A4 / Example spliced isoform

AAGCGCAAATCGGTCATCCATGGAACCCAGCAGTATAAGTGGGATCAGGCGCCTCGGATCAGCTCTGGCCAAGAACTCCATTGGCCCTGGCACCACGAATCAAACCCAGCAATCTTTTCGAATTTCCTAGGGTTTTTCTTGGCAGGCGGGAAGAACAAACAATGGAATCGGAAGGCTGTTTGCTCAAATTTCAGTTCATT
ACCAATTTGCCAATGTCTTCTTTCTTTCTTCGGGAATCGGAGCTTCCTCAAATGGGTAATTAGTGACCACTATTCCTGTAAGTACCCACTGTATTTTGAATTTGTGTATGGACTCTGTATTTA

>TRINITY_DN103348_c2_g4_i4 from sample A4 / Example unspliced isoform:

GCCCTGCTAATTACACGGCCCTGAAGCTCAAATTGGTCATCCATGGAACCCAGCAGTATAAGTGGGATCAGGCGCCTCGGATCAGCTCTGGCCAAGAACTCCATTGGCCCTGGCACCACGgtaagcgtctctccatctggtttgcttagtctctgcatttcaatatagaggtctctccatctgctttaatgatttgaata
tgaacagAATCAAACCCAGCAATCTTTTCGAATTTCCTAGGGTTTTTCTTGGCAGGCGGGAAGAACAAACAATGGAATCGGAAGGCTGTTTGCTCAAATTTCAGTTCATTACCAATTTGCCAATGTCTTCTTTCTTTCTTCGGGAATCGGAGCTTCCTCAAATGGGTAATTAGTGACCACTATTCCTGTAAGTACCCACT
GTATTTTGAATTTGTGTATGGACTCTGTATTTA

Intron 2 GTAAGCGTCT ... TTCTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50.33	55.3	21	92
A2	51.76	38.3	17.7	58.3
A3	45.58	58.3	18.3	73
A4	51.32	43	17.3	61
A5	44.34	36.3	8.3	34.7
A6	48.71	43.3	8	68
A7	50.63	60.7	15.3	112
A8	52.38	26.3	7.7	57.7
A9	46.73	68.3	11.7	101.7
A10	52.5	70.7	20.3	144

>TRINITY_DN110813_c3_g6_i1 from sample A3 / Example spliced isoform

GAAAAAACTCTTGTTATTGTTATTGTTTGGAACTCAAGGAGATATTACGGTATCTGTGGAAGCAGCTACTGTTGGCGAGGCTCTGTGTTCGCAGCTCCAGATGGTGCTCTCCCCCTCTTGGCAGATTGGATCTCTTGGGAGAAGGAAGGGAGAGCACTCGGTTTCTGCCCAAGTGCCCTGCTAATTACACGGCCCTGAAG
CTCAAATTGGTCATCCATGGAACCCAGCAGTATAAGTGGGATCAGGCGCCTCGGATCAGCTCTGGCCAAGAACTCCATTGGCCCTGGCACCACGGCGGGAAGAACAAACAATGGAATCGGAAGGCTGTTTGCTCAAATTTCAGTTCATTACCAATTTGCCAATGTCTTCTTTCTTTCTTCGGGAAT

>TRINITY_DN110813_c3_g6_i2 from sample A3 / Example unspliced isoform:

GAAAAAACTCTTGTTATTGTTATTGTTTGGAACTCAAGGAGATATTACGGTATCTGTGGAAGCAGCTACTGTTGGCGAGGCTCTGTGTTCGCAGCTCCAGATGGTGCTCTCCCCCTCTTGGCAGATTGGATCTCTTGGGAGAAGGAAGGGAGAGCACTCGGTTTCTGCCCAAGTGCCCTGCTAATTACACGGCCCTGAAG
CTCAAATTGGTCATCCATGGAACCCAGCAGTATAAGTGGGATCAGGCGCCTCGGATCAGCTCTGGCCAAGAACTCCATTGGCCCTGGCACCACGgtaagcgtctctccatctggtttgcttagtctctgcatttcaatatagaggtctctccatctgctttaatgatttgaatatgaacagaatcaaacccagcaatctt
ttcgaatttcctagggtttttcttggcagGCGGGAAGAACAAACAATGGAATCGGAAGGCTGTTTGCTCAAATTTCAGTTCATTACCAATTTGCCAATGTCTTCTTTCTTTCTTCGGGAAT