sp|Q42699|METE_CATRO ----> 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase


Intron 1 GTATAAATGC ... CTGCTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A19.6516117.229.2
A210.031701922.4
A310.5319022.416.2
A48.591491423
A58.0512110.616.6
A66.223772550.4
A78.4941138.255.2
A810.881802218.8
A911.7632643.625
A107.8933328.631.4



>TRINITY_DN133119_c1_g1_i8 from sample A1 / Example spliced isoform
CGGTAATTGTTGTTGGTGACTGTCCTTGGTTATAAAACCTCGGTTGCACCTTGCTAAATTTATCATATTCTGCTCTGATCCTTTGAAGGAACAACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTGCTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCC
CACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGA
CACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGCTTCGATACATACTTTTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGG
CGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTCTTGTCCAAACCTGCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATTCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTT
CAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACTAATTTGAAGGGTGTCTCTGCTATTGGGTTTGACCTTATCCG
TGGAACACAGACTCTAGTCCTTATCAAGGAGGTGGGTTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGATAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGG
ATTTGGAAAATGAAACAAAGCTTGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTCTTGAAGTGGATGCCCTAGCCAAGGCATTGGCTGGTAAAAAAGATGAGGCATTCTTTGCAGCCAACGCAGCTGCACAGGCTTCAAGGAGGGCTTCTCCGAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCT
GCAGCATTAAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGA
AGAAATTGCCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAACTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAA
AGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATT
CAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTCCGTATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCAC
CATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTATGACATTCACTCTCCTCGTATTCCTAGCACTGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACAAACATTCTGTGGGTTAACCCCGACTGTGGTCTGA
AGACGAGGAAGTACCCGGAGGTCATTCCAGCCTTAACCAATGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCCATCCCAGCTAGATACTAAATTCGTTTTACCAGTAATTTTTTTTGCGTTCTTTTCCAGAAGTAACTTTTATGGCTCGTATTTTCATCCCTCGTAAGTTGCGGATG
TGGCTGAGTGCCCGCTCCGGGCAGTACTGAGCCATATTTCACATATCTCCATCCACATTAGTTTCTTGTTACAGTTCAATATCATTTGACAAAATTCACAAAGTGTCTGCCCCATCATTCTCTTTGAATGGCAAGGTATTAAATGAAGTTTTTAATCAGAATCTTGGGCAATGTTTTCTGTAATTTTGCCTTGTCCAATA
AAGAGAAATCATTGGATGCCTACTCTAATTTGTTGGAGTCTTTAAGCTATTGAGTGGATCGTTATTCCGTTTAAAGGAATGTTTTCTATTATTGTATGAGACTATAGCGATTTTACTTTTAAAAAAAAA


>TRINITY_DN133119_c1_g1_i3 from sample A1 / Example unspliced isoform:
CGGTAATTGTTGTTGGTGACTGTCCTTGGTTATAAAACCTCGGTTGCACCTTGCTAAATTTATCATATTCTGCTCTGATCCTTTGAAGGAACAACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTGCTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCC
CACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGA
CACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGCTTCGATACATACTTTTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGG
CGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTCTTGTCCAAACCTGCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATTCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTT
CAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCG
TGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGgtataaatgcatgcatttttccttttgacagcgcttacagtttatgca
attttgaatgcattcttttgaatgctattggtgtatttgtaatataatagctggtctgcttgcag
ATAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTCTTGAAGTGGATGCCCTAG
CCAAGGCATTGGCTGGTAAAAAAGATGAGGCATTCTTTGCAGCCAACGCAGCTGCACAGGCTTCAAGGAGGGCTTCTCCGAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCATTAAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATT
CTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGAGGAATGACATGGTGGA
GTACTTTGGAGAACAACTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTT
TGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTC
CGTATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTA
TGACATTCACTCTCCTCGTATTCCTAGCACTGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACAAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGTACCCGGAGGTCATTCCAGCCTTAACCAATGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAA
AGTGAAGCCATCCCAGCTAGATACTAAATTCGTTTTACCAGTAATTTTTTTTGCGTTCTTTTCCAGAAGTAACTTTTATGGCTCGTATTTTCATCCCTCGTAAGTTGCGGATGTGGCTGAGTGCCCGCTCCGGGCAGTACTGAGCCATATTTCACATATCTCCATCCACATTAGTTTCTTGTTACAGTTCAATATCATTT
GACAAAATTCACAAAGTGTCTGCCCCATCATTCTCTTTGAATGGCAAGGTATTAAATGAAGTTTTTAATCAGAATCTTGGGCAATGTTTTCTGTAATTTTGCCTTGTCCAATAAAGAGAAATCATTGGATGCCTACTCTAATTTGTTGGAGTCTTTAAGCTATTGAGTGGATCGTTATTCCGTTTAAAGGAATGTTTTCT
ATTATTGTATGAGACTATAGCGATTTTACTTTTAAAAAAAAA




Intron 2 GTAAATGTGG ... ATGACCTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A122.73221650
A219.48186450
A315.23206370
A417205420
A514.17103170
A610.3710031160
A710.97714880
A811.57642840
A910.59633750
A1011.17525660



>TRINITY_DN46101_c0_g2_i4 from sample A8 / Example spliced isoform
GGCGTGGCCGCTTTCGAAGTCTTCTCCGTTTTACCGGAGATGGTTGGGGGAGTTGCCGCGAGTCCACGCATAGGGCAACTGTCCAGGCCAGTTTCGGGGGGTGGCCACCGGTAATTGTTGTTGGTGACTGTCCTTGGTTATAAAACCTCGGTTGCACCTTGCTAAATTTATCATATTCTGCTCTGATCCTTTGAAGGAAC
AACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTACTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCT
CGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGTTTCGATACATACTTTTCCATGGCTCGAGGTA
ACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTCTTGTCCAAACCT
GCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATGCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCT
TGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACTAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGG
CCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGAAAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGATGCCTTAGCCAAG
GCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAGGCTGCTGCAGCATTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCC
CACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGTGAATACAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGTCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACT
TTGGAGAACAGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGTTCCCGTTGTGTCAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAAC
TGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGTCCATCAAGGATGAGGTTGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTCCGTAT
CACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTATGACA
TTCACTCTCCTCGTATTCCAAGCACGGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGTACCCGGAGGTCGTTCCGGCCTTGACCAACATGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGA
AGCCATCCTAGCTAGATACTATATTTAGTTTACCAGTGTTTGAGTTTTTGAAAAAATATTTTTGCGTTCTTTTACATATGTAACTTTTATGGCTCGAATTTTCATCCTCATAAGTTGTGGATGTGGCTGAAAGTGCCCGCTTGAGCCATATTTCACATATCTCCATCCATATTAGTTTCTTGTGGCTGAAAATGCTCGCT
TGAGGCATATTTCACATATCTCCATCCATATTAGTTTGTTGTTACAGTTAAATAATATTTGACGAAATTCACAAATGTCTGCCCCATCATTCTCTTTGAATGGCAAGTTAGTAAATGGAGTTTTTTTAATCAAGATCTTGGGAAATGTTTTCTGTAGTTTTGCTCTATTCAATAAAAGAGAAATAATTGGATGCCCACTC
TAATTTGTCGGAGTGTTTAAGCTATTGGGTGAATCGTTATTGGATGCCTACTCTAATTTGTCATTATTTAGGCTATTGAGTGAATCGTTACTGGATGCCTATAATTTGTTGGAG


>TRINITY_DN46101_c0_g2_i7 from sample A8 / Example unspliced isoform:
GGCGTGGCCGCTTTCGAAGTCTTCTCCGTTTTACCGGAGATGGTTGGGGGAGTTGCCGCGAGTCCACGCATAGGGCAACTGTCCAGGCCAGTTTCGGGGGGTGGCCACCGGTAATTGTTGTTGGTGACTGTCCTTGGTTATAAAACCTCGGTTGCACCTTGCTAAATTTATCATATTCTGCTCTGATCCTTTGAAGGAAC
AACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTACTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCT
CGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGTTTCGATACATACTTTTCCATGGCTCGAGGTA
ACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTCTTGTCCAAACCT
GCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATGCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCT
TGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACTAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGG
CCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGAAAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGATGCCTTAGCCAAG
GCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAGGCTGCTGCAGCATTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCC
CACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGTGAATACAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGTCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACT
TTGGAGAACAGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGTTCCCGTTGTGTCAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAAC
TGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGTCCATCAAGGATGAGGTTGAAGATTTGGAAGCAGGTGGAATTCAGgtaaatgtggttgttaccttcagatgttgctaccaacttcttgttacagaactactaccaactagtcctgacacacatgcatggttgttgagagaata
gttagatgatgtcttccttttgtttagaattggctctgaaatattggttttccatgacctcag
GTGATTCAAATTGACGAGG




Intron 3 GTATGGCTTC ... TCACTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A111.421135.416
A213.14115.9919.2
A311.0915810.721.4
A413.2692.46.315.2
A513.1480.49.113
A69.54136.33.615.6
A710.55193.8825
A813.8945.91.88.3
A910.06104.44.412.8
A1011.32172.91.824.4



>TRINITY_DN133119_c1_g1_i4 from sample A1 / Example spliced isoform
AAGTAACAATAAGTATACCTGCTCCTGGCGGGGCCAGTTTCGGCGGTGGCCACTGGCCACTAGTACTTTTTCATTGGACTTCATTATAAAACTTAAACTTCGGTTCTACCTTGCTATTCCACAGCAGGCCGGAAATTCTTCTGCTCTGCGTCTCTGGTTTGCTGCACCTTTGCCTTCAAGGGAAATTAGGACTTTTCAAG
CTCCGAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCTAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAACACGTTCTCGT
ACTATGATCAGGTTTTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGTGGTGAGATTGGCTTCGACACCTACTTCTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTC
GCTTACTCATCACACAAGGCGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGTGTGGCAAAGACATTCAATCTCCTTTCTCTTCTTGATGCAATCCTCCCAATTTACACGCAAGTTGTGGCGGAGTTGGAGGC
AGCTGGTGCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACTCTTACATGGGAGGAGCATCGCTTGGTGTTAAAGTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGTAAGAAACCGTCTTATTTGCTCTCTATGACT
TTTTCTAGTTATCGTTGTATTTTAGTATTTTAGAACGATGAATTTCATATCTGCTATACATCTTATGCTGTGAAACTTTGCTCTTTC


>TRINITY_DN133119_c1_g1_i5 from sample A1 / Example unspliced isoform:
AAGTAACAATAAGTATACCTGCTCCTGGCGGGGCCAGTTTCGGCGGTGGCCACTGGCCACTAGTACTTTTTCATTGGACTTCATTATAAAACTTAAACTTCGGTTCTACCTTGCTATTCCACAGCAGGCCGGAAATTCTTCTGCTCTGCGTCTCTGGTTTGCTGCACCTTTGCCTTCAAGgtatggcttctttcttaagt
gggtatccctttttctgtcaaatgttggggatttggatggctgcaaaagggccgagccaatggggatctgttagtataatggcttctccatagggaagaatcacaaagctatattactgaaatttagggcaacaggtcttggtttttcagatctagggttttattttgaaggtgaactaattggatctcacttgcag
GGA
AAT
TAGGACTTTTCAAGCTCCGAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCTAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCC
CAGCAACACGTTCTCGTACTATGATCAGGTTTTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGTGGTGAGATTGGCTTCGACACCTACTTCTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGG
GCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGTGTGGCAAAGACATTCAATCTCCTTTCTCTTCTTGATGCAATCCTCCCAATTTACACGCAAGTT
GTGGCGGAGTTGGAGGCAGCTGGTGCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACTCTTACATGGGAGGAGCATCGCTTGGTGTTAAAGTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGTCATTACTAATTT
GAAGGGTGTCTCTGCTATTGGGTTTGACCTTATCCGTGGAACACAGACTCTAGTCCTTATCAAGGAGGTGGGTTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGATAAGTTAGTTG
TCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTCTTGAAGTGGATGCCCTAGCCAAGGCATTGGCTGGTAAAAAAGATGAGGCATTCTTTGCAGCCAACGCAGCTGCACAGGCTTCAAGGAGGGCTTCT
CCGAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCATTAAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAA
GATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAACTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGA
AGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAG
GTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTCCGTATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTAT
TCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTATGACATTCACTCTCCTCGTATTCCAAGCACGGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAA
CGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGTACCCGGAGGTCGTTCCGGCCTTGACCAACATGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCCATCCTAGCTAGATACTATATTTAGTTTACCAGTGTTTGAGTTTTTGAAAAAATATTTTTGCGTTCTTT
TACATATGTAACTTTTATGGCTCGAATTTTCATCCTCATAAGTTGTGGATGTGGCTGAAAGTGCCCGCTTGAGCCATATTTCACATATCTCCATCCATATTAGTTTCTTGTGGCTGAAAATGCTCGCTTGAGGCATATTTCACATATCTCCATCCATATTAGTTTGTTGTTACAGTTAAATAATATTTGACGAAATTCAC
AAATGTCTGCCCCATCATTCTCTTTGAATGGCAAGTTAGTAAATGGAGTTTTTTTAATCAAGATCTTGGGAAATGTTTTCTGTAGTTTTGCTCTATTCAATAAAAGAGAAATAATTGGATGCCCACTCTAATTTGTCGGAGTGTTTAAGCTATTGGGTGAATCGTTATTGGATGCCTACTCTAATTTGTCATTATTTAGG




Intron 4 GTAAGTTCGA ... TTCTTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A113.99246402
A216.07188363
A316.34215423
A413.43187292
A514.29126213
A614.22350580
A714.68372641
A813.6495150
A914.75312543
A1011.8299401



>TRINITY_DN112041_c0_g5_i5 from sample A5 / Example spliced isoform
AATAAGTATACCTGCTCCTGGCGGGGCCAGTTTCGGCGGTGGCCACTGGCCACTAGTACTTTTTCATTGGACTTCATTATAAAACTTAAACTTCGGTTCTACCTTGCTATTCCACAGCAGGCCGGAAATTCTTCTGCTCTGCGTCTCTGGTTTGCTGCACCTTTGCCTTCAAGGGAAATTAGGACTTTTCAAGCTCCGAA
GCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCTAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAACACGTTCTCGTACTATGA
TCAGGTTTTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGTGGTGAGATTGGCTTCGACACCTACTTCTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTCGCTTACT
CATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGCTTGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATGCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGT
GCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTT
TGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTGGAGAGCATAGTAGGGAAAGAAAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGC
ACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTT
CAAAAGGCTGCTGCAGCCTTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACAACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTC


>TRINITY_DN112041_c0_g5_i2 from sample A5 / Example unspliced isoform:
AATAAGTATACCTGCTCCTGGCGGGGCCAGTTTCGGCGGTGGCCACTGGCCACTAGTACTTTTTCATTGGACTTCATTATAAAACTTAAACTTCGGTTCTACCTTGCTATTCCACAGCAGGCCGGAAATTCTTCTGCTCTGCGTCTCTGGTTTGCTGCACCTTTGCCTTCAAGGTATGGCTTCTTTCTTAAGTGGGTATC
CCTTTTTCTGTCAAATGTTGGGGATTTGGATGGCTGCAAAAGGGCCGAGCCAATGGGGATCTGTTAGTATAATGGCTTCTCCATAGGGAAGAATCACAAAGCTATATTACTGAAATTTAGGGCAACAGGTCTTGGTTTTTCAGATCTAGGGTTTTATTTTGAAGGTGAACTAATTGGATCTCACTTGCAGGGAAATTAGG
ACTTTTCAAGCTCCGAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCTAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAAC
ACGTTCTCGTACTATGATCAGGTTTTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGTGGTGAGATTGGCTTCGACACCTACTTCTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTAgtaagttcgatcccatgacctcgatcttta
tacttgtgaatacgagtctacatcaaaagagtgaattgtgttgtcttcagtgaggattgctaaatctagtgtgggttattgggcaatgatccaagtagagtgtgttgtctttgttcttttcag
TCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGG
AGGCTAAAGAGGTGCTAGATCTGTACTTCAGTTGCTCTTCTGTGAATCATTTAGTGTTTAATATCAAAATGTCAGTTCATGTTCATTGGCCAATAGTTAAAT




Intron 5 GTAAGTTCGA ... TTCTTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A113.33247382
A217.18188392
A315.35215393
A412.86183273
A517.65126273
A613.12351530
A714.48372631
A815.3294170
A913.57312493
A1011.28299380



>TRINITY_DN123472_c0_g1_i12 from sample A2 / Example spliced isoform
CTTTGAAGGAACAACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTACTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTC
TGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGCTTCGATACATACTTTTCCA
TGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTC
TTGTCCAAGCCTGCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATTCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGG
AGGAGCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCC
GAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGATAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGAT
GCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAGGCTGCTGCAGCATTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCT
TCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACA
TGGTGGAGTACTTTGGAGAACAGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTG
ACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTA


>TRINITY_DN123472_c0_g1_i11 from sample A2 / Example unspliced isoform:
CTTTGAAGGAACAACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTACTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTC
TGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGCTTCGATACATACTTTTCCA
TGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTAgtaagttcgatcccatgatctcgatctttataattgtgaatacgagtctacaccaaaatagtgatctgtgttgtcttcattgaggattgctaaatctagttgttgggcattgggccatgatctaatctgagtatgttgc
ctttgttcttttcag
TCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGGTGCTAGATCTGTACTTCAGTTGCTCTTCTGTGAATCATTTAGTGTTTAATATCAAAATGTCAGTTCATGTTCATTGGCCAATAGTTAAATCCCAAG
TAGATCCACGTCCTACTAGGAGACAAGTTGAAATCTCCCCAGTCTGCCATTTTCTAAATTGAAATTTCCATTGCCTGCCATTTGTACTGTTTTTCTAACTGTTTTTCTAACGTGTTTACCTGCCATTTTGGTGCCAAGCGATAAAACATATTAATTTTTAACTTAATTAAGATAGCCTGCCTCGCGGACATGTTTCATTG
GCCCAGAATTGATTTAATGAATATCTTGTAACTTAATGAAAAGAGGGATAGTCTTACTATCAGTTCTGCAC




Intron 6 GTGGGTTTTG ... GTTATAACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A10.425201
A20.87228.502
A3031100
A41.45204.503
A50.68147.511
A60.42946.514
A71.23803.5110
A80.8646004
A91.44617.519
A100.31641.502



>TRINITY_DN48079_c8_g2_i9 from sample A7 / Example spliced isoform
TCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGCTTGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGT
GTGGCAAAGACATTCAATCTCCTTTCTCTTCTTGATGCAATCCTCCCAATTTACACGCAAGTTGTGGCGGAGTTGGAGGCAGCTGGTGCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAA
TCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATT
TGGCTGCTTCATTGAGTGTTTTGGAAAGCCTTGAGAGCATAGTAGGGAAAGATAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTCTTGAAGTGGATGCCCTAGCCAAGGCATTGGCT
GGTAAAAAAGATGAGGCATTCTTTGCAGCCAACGCAGCTGCACAGGCTTCAAGGAGGGCTTCTCCGAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCATTAAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACAACAAC
AATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAAC
AGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTT
GTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTACCTGGATTGGGCTGTTCATGGTTCAGATGGGTTCTAACA
AGCCGGTTCAGACATTTGACAGTGAGCAGCAGCGTTTACGAATTGACAGAGAATGGAGGTTCATTTCATTTGGCCACAGTGCGGCAAGAATGGAGGTGGGGCGTTGGAAATCACGATGCTTTAATTCAGCCGGAGTTTCCCATTAATTCCATGCCCTTCTCTTTGACATGATCGGTTTACAGGTTGAATCGACGGAGAAT
TCGTTGGATTATAAGATACAAGGTAAGATACAGTTTTGGAAGCGGCCTTGTTGGTTTCGATGTCGGGCTGATAGATTGTAGGTGTTACTGTGCTCATCAATCTGCATAAATTTGATGTAGTTCAGTCCCACTCTCCCTTAGCTGCCCATCATGTAACCACGTTAATGCCCACAAAGCGAGCTCATTTCAGGCCCTTTTCG
AGCTCGAGGGTCGTTTTTCT


>TRINITY_DN48079_c8_g2_i6 from sample A7 / Example unspliced isoform:
CGGGAATACAAGATAAACAAgtgggttttgccgttgtgattattcaattggattgaggttttatatttgctattatctagaaacatggttgtaacaaagaacatctgatgttataacagGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAATTGCAAGAGGACCTTGATATTGA
TGTGCTTGT




Intron 7 GTTTTTACCA ... GTTTTATCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A11.9115413
A2010500
A3014000
A41.7711102
A509600
A60.398503
A70.3165122
A80.24824.102
A90.3164202
A100.2737401



>TRINITY_DN133119_c1_g1_i14 from sample A1 / Example spliced isoform
CGGTAATTGTTGTTGGTGACTGTCCTTGGTTATAAAACCTCGGTTGCACCTTGCTAAATTTATCATATTCTGCTCTGATCCTTTGAAGGAACAACAGAATTCTATCCCTCCGGAAACTCTTCTGCTCTCCGTCTCTGGTTTCCTGTACCTTTTGCTTTAAGGGGAGTTAGTACTTTTCAAGCTCCAAAGCAATGGCTTCC
CACGTTGTTGGATACCCTCGCATGGGCCCCAAAAGAGAGCTCAAGTTCGCTCTCGAGTCCTTCTGGGATGGCAAGACTTCTGCTGCTGATCTCGAGGCTGTGGCCAAGGGACTAAGGGCTTCGATCTGGAAGCAGATGGCAGCTGCCGGGGTGAAAATGATTCCCAGCAATACGTTCGCGTACTATGATCAGGTTCTGGA
CACCACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGCCTTTGCTGGCGGCGAGATTGGCTTCGATACATACTTTTCCATGGCTCGAGGTAACGCCACTCTCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAATTATCACTACATTGTTCCTGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGG
CGGTGGAAGAATACAAGGAGGCTAAAGAGCTCGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTCTCATACTTGCTCTTGTCCAAACCTGCAAAGGGCGTGGCAAAGACCTTCAATCTCCTTTCTCTTCTCGATTCAATCCTCCCAATTTACCTGCAAGTTGTGACTGAGTTGGAGGCAGCTGGTGCAACATGGGTT
CAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCG
TGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATTTGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGGTATAAATGCATGCATTTTTCCTTTTGACAGCGCTTACAGTTTATGCA
ATTTTGAATGCATTCTTTTGAATGCTATTGGTGTATTTGTAATATAATAGCTGGTCTGCTTGCAGATAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTCTTGAAGTGGATGCCCTAG
CCAAGGCATTGGCTGGTAAAAAAGATGAGGCATTCTTTGCAGCCAACGCAGCTGCACAGGCTTCAAGGAGGGCTTCTCCGAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCATTAAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATT
CTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGAGGAATGACATGGTGGA
GTACTTTGGAGAACAACTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGCGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTT
TGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTC
CGTATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTA
TGACATTCACTCTCCTCGTATTCCAAGCACGGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGTACCCGGAGGTCGTTCCGGCCTTGACCAACATGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAA
AGTGAAGCCATCCTAGCTAGATACTATATTTAGTTTACCAGTGTTTGAGTTTTTGAAAAAATATTTTTGCGTTCTTTTACATATGTAACTTTTATGGCTCGAATTTTCATCCTCATAAGTTGTGGATGTGGCTGAAAGTGCCCGCTTGAGCCATATTTCACATATCTCCATCCATATTAGTTTCTTGTGGCTGAAAATGC
TCGCTTGAGGCATATTTCACATATCTCCATCCATATTAGTTTGTTGTTACAGTTAAATAATATTTGACGAAATTCACAAATGTCTGCCCCATCATTCTCTTTGAATGGCAAGTTAGTAAATGGAGTTTTTTTAATCAAGATCTTGGGAAATGTTTTCTGTAGTTTTGCTCTATTCAATAAAAGAGAAATAATTGGATGCC
CACTCTAATTTGTCGGAGTGTTTAAGCTATTGGGTGAATCGTTATTGGATGCCTACTCTAATTTGTCATTATTTAGG


>TRINITY_DN133119_c1_g1_i10 from sample A1 / Example unspliced isoform:
GCGGATCGTATCAGCAAGgtttttaccaatgttctcaatctatatatgttaactttcattggatggataattattaattacatttagattaaagttgaagtggcctaactggttctctattctgttttatcagATGCTTGCTGTTCTCGAAACGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGT
ACCCGGAGGTC




Intron 8 GTGAGTACCA ... ACTGTTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A119.538412561
A217.7432710833
A318.5639513149
A419.153259361
A516.372127112
A619.441260448160
A720.191032392130
A819.2562520593
A918.0776627068
A1019.675929476



>TRINITY_DN48079_c8_g2_i8 from sample A7 / Example spliced isoform
TCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGCTTGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGT
GTGGCAAAGACATTCAATCTCCTTTCTCTTCTTGATGCAATCCTCCCAATTTACACGCAAGTTGTGGCGGAGTTGGAGGCAGCTGGTGCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAA
TCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATT
TGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGAAAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGATGCCTTAGCCAAGGCATTGGCT
GGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAGGCTGCTGCAGCCTTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACAACAAC
AATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATATTAGCTCCATCAAGGAAGAAATTGTCAAAGTTGTCAAAATGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAAC
AGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGTTCCCGTTGTGTCAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGACTGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTT
GTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTCCGTATCACCAACTG
CGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTATGACATTCACTCTC
CTCGTATTCCTAGCACTGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAAGTACCCGGAGGTCATTCCAGCCTTAACCAATGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCCATCCC
AGCTAGATACTAAATTCGTTTTACCAGTAATTTTTTTTGCGTTCTTTTCCAGAAGTAACTTTTATGGCTCGTATTTTCATCCCTCGTAAGTTGCGGATGTGGCTGAGTGCCCGCTCCGGGCAGTACTGAGCCATATTTCACATATCTCCATCCACATTAGTTTCTTGTTACAGTTCAATATCATTTGACAAAATTCACAA
AGTGTCTGCCCCATCATTCTCTTTGAATGGCAAGGTATTAAATGAAGTTTTTAATCAGAATCTTGGGCAATGTTTTCTGTAATTTTGCCTTGTCCAATAAAGAGAAATCATTGGATGCCTACTCTAATTTGTTGGAGTCTTTAAGCTATTGAGTGGATCGTTATTCCGTTTAAAGGAATGTTTTCTATTATTGTATGAGA
CTATAGCGATTTTACTTTTTTTACATTACAAGTGGCATATGATAAATAAAATACACGTTACAAGTGATTTTACACTAAAA


>TRINITY_DN48079_c8_g2_i2 from sample A7 / Example unspliced isoform:
TCCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCATTACATTGTTCCCGAGTTGGGCCCGGAGATCAAATTCGCTTACTCATCACACAAGGCGGTGAAAGAATACAAGGAGGCTAAAGAGCTTGGCATTGACACAGTGCCCGTGCTCGTTGGACCCGTGTCATACTTGCTCTTGTCCAAGCCTGCAAAGGGT
GTGGCAAAGACATTCAATCTCCTTTCTCTTCTTGATGCAATCCTCCCAATTTACACGCAAGTTGTGGCGGAGTTGGAGGCAGCTGGTGCTACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTTATCAGTTGGAGGCCTTTTCGAAGGCATACGCTTACCTGGGAGGAGCATCTCTTGGTGTTAA
TCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGCTGAGACTTACAAGACCATTACGAATTTGAAGGGTGTCTCTGCTATTGGGTTTGATCTTATCCGTGGAACACAGACCCTTGGCCTTATCAAGGAGATCGGCTTCCCAGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAACATTTGGGCCAATGATT
TGGCTGCTTCTTTGAGTGTTTTGGAAAGCCTCGAGAGCATAGTAGGGAAAGAAAAGTTAGTTGTCTCTACTTCATGCTCTCTCCTGCACACGGCCGTGGATTTGGAAAATGAAACAAAGCTGGACAGTGAAATAAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTTTTGAAGTGGATGCCTTAGCCAAGGCATTGGCT
GGTCAGAAAGATGAGGCATTCTTTGCATCTAACGCAGCTGCACTGGCTTCAAGGAGGGCTTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAGGCTGCTGCAGCCTTGAAGACTTCTGACCATCGCCGAGCCACACCAGTAAACGTTCGTCTTGAGCAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACAACAAC
AATTGGGTCATTCCCACAGACAGTTGAATTGCGCAGGGTTCGTCGGGAATACAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAAGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTTCACGGAGAACCTGAGgtgagtaccaaataaattgcaattaatgcta
aagctgttatgaggttttcaacgggaaagtcgaagctaattatctaacttactgttacag
AGGAATGACATGGTGGAGTACTTTGGAGAACAGCTCCAGGGCTTTGCATTTACAGTCAATGGTTGGGTGCAGTCTTACGGATCCCGTTGTGTCAAGCCACCAGTTATCTATGGTGATGTCAGTCGACCAAAGGCCATGAC
TGTCTTTTGGTCTAAGATGGCCCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACATGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGATTTGGAAGCAGGTGGAATTCAGGTGATTCAAATTGACG
AGGCAGCTCTCAGAGAAGGCTTGCCTCTACGCAAGGCCGAACATGCTTATTATCTGGATTGGGCAGTTCATGGATTCCGTATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCATACCCACATGTGCTACTCGAACTTCAATGATATTATTCATTCGATCATTGATATGGATGCCGATGTCATCACCATTGAGAAT
TCCCGTTCTGATGAGAAGCTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGGGCTGGAATTGGTCCTGGTGTCTATGACATTCACTCTCCTCGTATTCCAAGCACGGAAGAAATTGCGGATCGTATCAGCAAGATGCTTGCTGTTCTCGAAACGAACATTCTGTGGGTTAACCCCGACTGTGGTCTGAAGACGAGGAA
GTACCCGGAGGTCATTCCAGCCTTAACCAATGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCCATCCCAGCTAGATACTAAATTCGTTTTACCAGTAATTTTTTTTGCGTTCTTTTCCAGAAGTAACTTTTATGGCTCGTATTTTCATCCCTCGTAAGTTGCGGATGTGGCTGAGTG
CCCGCTCCGGGCAGTACTGAGCCATATTTCACATATCTCCATCCACATTAGTTTCTTGTTACAGTTCAATATCATTTGACAAAATTCACAAAGTGTCTGCCCCATCATTCTCTTTGAATGGCAAGGTATTAAATGAAGTTTTTAATCAGAATCTTGGGCAATGTTTTCTGTAATTTTGCCTTGTCCAATAAAGAGAAATC
ATTGGATGCCTACTCTAATTTGTTGGAGTCTTTAAGCTATTGAGTGGATCGTTATTCCGTTTAAAGGAATGTTTTCTATTATTGTATGAGACTATAGCGATTTTACTTTTTTTACATTACAAGTGGCATATGATAAATAAAATACACGTTACAAGTGATTTTACACTAAAA