sp|Q9T0J6|DUS3L_ARATH ----> tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Intron 1 GTAAGTTTCC ... TTAAAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 22.5 | 8.9 | 5 |
| A2 | 28.26 | 33 | 8.9 | 13 |
| A3 | 18 | 41 | 9.3 | 9 |
| A4 | 31.82 | 15 | 2.3 | 7 |
| A5 | 20 | 12 | 3.2 | 3 |
| A6 | 17.71 | 79 | 18.9 | 17 |
| A7 | 16.79 | 114 | 25.9 | 23 |
| A8 | 21.14 | 97 | 18.1 | 26 |
| A9 | 12.5 | 105 | 22.6 | 15 |
| A10 | 20 | 68 | 16.6 | 17 |
>TRINITY_DN41539_c0_g2_i7 from sample A6 / Example spliced isoformGGAAATTTTAAATTTTTTTGTCGGAGCTTTTTCGAGGGGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGC
ACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTGTTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTG
GCTGCTGACTATGGAGCAGACATTACATATGGGGAGGAGATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGC
TCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAGCAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTG
AAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAATGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCA
ACAGGTGCATCCTCCGTGATGGTGGCAAGAGGAGCTTTATGGAATGCTTCTATATTTCGACCTGAAGGGAAACTTCCTTGGGAGGATGTGAAGAGAGAGTACTTACACAAGAGCTTTTTATGGGACAATAGCCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGG
CAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCAGATGTTTATGGAGAACAAAACTTCTATAGAACTATTCTGGAAGACCGAGAGTTATGGGCTGCTACAAGGAAGCTTAAACTATTTTGAGGACACTACCTATTATTAGACACTGAGATCGTCAAGATTCCAGCCTCAGGGTTTACCTAACAATGAAACCGTT
GGCTGAGTCTAAAATATCTTTTCAAGGGTAAAGTGCAATGCCATCAGTTTATTTGAAAATATAAAATGGTGCATACACTATTTCCTTCCACTTGATGCAAGTAGATCTTTATTGTCTGGGACATGAAGGACATCTTTACATGTGATTTCTTCTTCCAATAAAATGAGAAATAGAATCTTATGGCTGAGATAGCTATGAAA
TAATATTGTCTATCCTCTGAACTTCGGAAATTGGGTTCACAAGAATTGTTGTGGTGCAACACTAAAAATGTGTTTGCATCTCCATTTTTGAAGGAGCAATTATTTATGCCTTGGGGGATTCAGATATATTTTATGGCTGAAGTCCAAAAGACAATTTTCAAAGCAGCTTTGTTGACCCATGTCATTGACCACGGGAAGCA
TCATCACCTTCTATTAAAATTTTTCAATGTTTTTAATGACAGAGAATCAAATAGTCAGTCTTGTTCCCATTGCCATGGGTGCTGTCAGATATTTATGGTCAAAACGAAAGACAGTGCTGGTTGGAGCTTACACATCTTATATAAACGAACTGCTTTCAACAAAAGGACTGCATTTCCAGGATTGAAGCTAGTCCATGGCC
GAATTGTGACAAATGTTTCATTTTGCCTATAACCTAACATGCCAAGTAATAGAGTTGAGTGAACTATGAAATATTCAGCTGCAGAGTAAAAGCGGGCATCTGTTAGCATTGTTTTGATTGGGAATTACTATTGGAGAGAAGATTTTTAGACTCAGCGTAAATGGTTTAAAAAATAAGAGCAATTGCTAAAGATTATTGAA
TCACCGCTGCAAACAGAATAGCAATTGTATTCATGTTCTTATAAACTTGGAAAAGGATCCACCCATTCGACAAGCATGGCAAACAATTTGACAATTGATTCACATCCCATTTGATGTGTAGTATCTTGTAATACATTCAAACATGCTGCGAGTTCAACAAATGTAGTGATCAACTTGGTATGGAAATGGC
>TRINITY_DN41539_c0_g2_i1 from sample A6 / Example unspliced isoform:GGAAATTTTAAATTTTTTTGTCGGAGCTTTTTCGAGGGGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGC
ACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTGTTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTG
GCTGCTGACTATGGAGCAGACATTACATATGGGGAGGAGATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGC
TCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAGCAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTG
AAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAATGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCA
ACAGGTGCATCCTCCGTGATGGTGGCAAGAGGAGCTTTATGGAATGCTTCTATATTTCGACCTGAAGGGAAACTTCCTTGGGAGGATGTGAAGAGAGAGTACTTACACAAGAGCTTTTTATGGGACAATAGCCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGG
CAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCgtaagtttcctgttctcggaaatggctatgaacacgaaaggaagattaaagatagcagaaagtttagaaaccaatgaaaataaattataaaatatcttttcttccaatttatattgaaatgcatctggtttttgttgtgcttccttcattccactcttctc
tttatgaaggctatctatttttttgttgtgcttccttcacaccctcgtctttcttttttcatttttctgtttgtgaataaattctctgaccttcaaatacagtcatatgcttctatttaattcacacattgttgaacctattgtttaagattagagcatcatgcatacattctccgacatgcacttacatgcttctattt
tttttgcacattgctgaacctgttgtttaagatcagagcatataggagtagttcaggtgccattttcaacttttcacacatgtaactatttgttgctaacacactggtgctgtattttttaaaattagAGATGTTTATGGAGAACAAAACTTCTATAGAACTATTCTGGAAGACCGAGAGTTATGGGCTGCTACAAGGAA
GCTTAAACTATTTTGAGGACACTACCTATTATTAGACACTGAGATCGTCAAGATTCCAGCCTCAGGGTTTACCTAACAATGAAACCGTTGGCTGAGTCTAAAATATCTTTTCAAGGGTAAAGTGCAATGCCATCAGTTTATTTGAAAATATAAAATGGTGCATACACTATTTCCTTCCACTTGATGCAAGTAGATCTTTA
TTGTCTGGGACATGAAGGACATCTTTACATGTGATTTCTTCTTCCAATAAAATGAGAAATAGAATCTTATGGCTGAGATAGCTATGAAATAATATTGTCTATCCTCTGAACTTCGGAAATTGGGTTCACAAGAATTGTTGTGGTGCAACACTAAAAATGTGTTTGCATCTCCATTTTTGAAGGAGCAATTATTTATGCCT
TGGGGGATTCAGATATATTTTATGGCTGAAGTCCAAAAGACAATTTTCAAAGCAGCTTTGTTGACCCATGTCATTGACCACGGGAAGCATCATCACCTTCTATTAAAATTTTTCAATGTTTTTAATGACAGAGAATCAAATAGTCAGTCTTGTTCCCATTGCCATGGGTGCTGTCAGATATTTATGGTCAAAACGAAAGA
CAGTGCTGGTTGGAGCTTACACATCTTATATAAACGAACTGCTTTCAACAAAAGGACTGCATTTCCAGGATTGAAGCTAGTCCATGGCCGAATTGTGACAAATGTTTCATTTTGCCTATAACCTAACATGCCAAGTAATAGAGTTGAGTGAACTATGAAATATTCAGCTGCAGAGTAAAAGCGGGCATCTGTTAGCATTG
TTTTGATTGGGAATTACTATTGGAGAGAAGATTTTTAGACTCAGCGTAAATGGTTTAAAAAATAAGAGCAATTGCTAAAGATTATTGAATCACCGCTGCAAACAGAATAGCAATTGTATTCATGTTCTTATAAACTTGGAAAAGGATCCACCCATTCGACAAGCATGGCAAACAATTTGACAATTGATTCACATCCCATT
TGATGTGTAGTATCTTGTAATACATTCAAACATGCTGCGAGTTCAACAAATGTAGTGATCAACTTGGTATGGAAATGGC
Intron 2 GTACTTGTTT ... TTCATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.07 | 41 | 6.8 | 16 |
| A2 | 39.68 | 38 | 4.5 | 25 |
| A3 | 27.4 | 53 | 12.8 | 20 |
| A4 | 27.12 | 43 | 12.8 | 16 |
| A5 | 25 | 24 | 1.5 | 8 |
| A6 | 16.67 | 80 | 10.5 | 16 |
| A7 | 20.51 | 93 | 15.3 | 24 |
| A8 | 21.51 | 73 | 11.5 | 20 |
| A9 | 22.15 | 116 | 28 | 33 |
| A10 | 26.96 | 84 | 11.3 | 31 |
>TRINITY_DN111321_c0_g1_i4 from sample A2 / Example spliced isoformGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTG
TTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGA
GATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAG
CAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTG
GGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAATGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGAGCTTTTTATGGGACAATAGCCCTAAATGTACAA
AGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGGCAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCTGCGCGATTTACAACACTCGGGCCTATAGTGGGCTCAGCATGAGGAAATGAGTTGGATGAACCAAGTGAGGGACTCCACTTGAAATAAGCAGCGAGATAGATTTCG
TTCAAAGCTCGACAAGAGGTAACCGACAAGTCATCTCGAATTGCAAGCGAGTATGTCCCATTTTCTGAAGCATTATAATAGTATAACATTGTCTATATGTGAACATTGTTTCACTATGTATTTGAACGATTTGTTATTGGAAAATATTACCGATGAATATTTCCTCTTACTCTATGAGTAGTTACACTGGATGGCGAGAA
GGAACTCTTTAGAAGGATTAATATAGTTTTTTTTTTAAAGCTCCTAGTTGTGAATGAAAGGTTTATGTGCTAAGTTCAAGAACTCTCCTAAATCG
>TRINITY_DN111321_c0_g1_i5 from sample A2 / Example unspliced isoform:GGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTG
TTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGA
GATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAG
CAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACgtacttgtttatgttatatattcatttgatatgacaagagaactactttagtgttttcctaaaatggtcaatgaatttgagaaggaaatggctaatgccaattcaaat
tgcctttcattttagATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGTAAATTGCTTAATACTATTTTGTAAGTTGATAACATAGTTTGCGAGG
TTTGTTGTCTAGCAGTAGGTACTCCATGTTCATATGCATAGAATGACTTATAAATGGAAAGGGTTGTTGCTAATACATTAGAGATGAGTGAGATCCAGGACGATATCTTATTAAGATGCTGAGTGGTTACATGATTGGATGGGAGGTCGATGATCATCCACA
Intron 3 GTGCATCCTC ... CTTACACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.19 | 44.9 | 46.9 | 43.3 |
| A2 | 41.18 | 68.5 | 57 | 38.6 |
| A3 | 43.26 | 59.5 | 50.9 | 39.4 |
| A4 | 44.78 | 49.2 | 51.8 | 27.9 |
| A5 | 56.63 | 11.7 | 13.9 | 16.5 |
| A6 | 41.4 | 126.4 | 79.7 | 98.8 |
| A7 | 47.69 | 149.6 | 131.3 | 140.3 |
| A8 | 47.53 | 119.2 | 103.7 | 111.6 |
| A9 | 48.16 | 136.7 | 129.1 | 125.4 |
| A10 | 46.9 | 125 | 118.9 | 100.8 |
>TRINITY_DN125094_c3_g1_i6 from sample A1 / Example spliced isoformAAAAACACCATGATTAAAGAAAATGAACGGTTAAAAAGTACCAAAAGGAAATTTTAAATTTTTTTGTCGGAGCTTTTTCGAGGGGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCG
TTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTGTTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACAT
CCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGAGATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAA
GACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAGCAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACATTTTGACAACGTTAAGAAATAAT
TTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAA
TGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGAGCTTTTTATGGGACAATAGCCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGGCAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCTGCGCGATTTACAACACTCGGG
CCTATAGTGGGCTCAGCATGAGGAAATGAGTTGGATGAACCAAGTGAGGGACTCCACTTGAAATAAGCAGCGAGATAGATTTCGTTCAAAGCTCGACAAGAGGTAACCGACAAGTCATCTCGAATTGCAAGCGAGTATGTCCCATTTTCTGAAGCATTATAATAGTATAACATTGTCTATATGTGAACATTGTTTCACTA
TGTATTTGAACGATTTGTTATTGGAAAATATTACCGATGAATATTTCCTCTTACTCTATGAGTAGTTACACTGGATGGCGAGAAGGAACTCTTTAGAAGGATTAATATAGTTTTTTTTTTAAAGCTCCTAGTTGTGAATGAAAGGTTTATGTGCTAAGTTCAAGAACTCTCCTAAATCGGTTGACTCGATTGGTCAAGTT
AAACACTTATTACCTTTCTTTATGTTCTTTTTATCCTTGTTAGTTGAAACCTTTCGGTTTCAACACTCATTTTATTTGAATGAGTACAGTTAATACTTTTTGTTGACTTTATAAAACTTGATTGATCCGAT
>TRINITY_DN125094_c3_g1_i5 from sample A1 / Example unspliced isoform:AAAAACACCATGATTAAAGAAAATGAACGGTTAAAAAGTACCAAAAGGAAATTTTAAATTTTTTTGTCGGAGCTTTTTCGAGGGGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCG
TTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTGTTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACAT
CCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGAGATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAA
GACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAGCAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGGTGCGGCATTGCTAGCCAAGCCAGAGCTAATTCATGACATTTTGACAACGTTAAGAAATAAT
TTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAA
TGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGgtgcatcctccgtgatggtggcaagaggagctttatggaatgcttctatatttcgacctgaagggaaacttccttgggaggatgtgaagagagagtacttacacaagAGCTTTTTATGGGACAATAGCCCTAAATGTACAAAGCAGACAT
TGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGGCAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCAGATGTTTATGGAGAACAAAACTTCTATAGAACTATTCTGGAAGACCGAGAGTTATGGGCTGCTACAAGGAAGCTTAAACTATTTTGAGGACACTACCTATTATTAGACACTGAG
ATCGTCAAGATTCCAGCCTCAGGGTTTACCTAACAATGAAACCGTTGGCTGAGTCTAAAATATCTTTTCAAGGGTAAAGTGCAATGCCATCAGTTTATTTGAAAATATAAAATGGTGCATACACTATTTCCTTCCACTTGATGCAAGTAGATCTTTATTGTCTGGGACATGAAGGACATCTTTACATGTGATTTCTTCTT
CCAATAAAATGAGAAATAGAATCTTATGGCTGAGATAGCTATGAAATAATATTGTCTATCCTCTGAACTTCGGAAATTGGGTTCACAAGAATTGTTGTGGTGCAACACTAAAAATGTGTTTGCATCTCCATTTTTGAAGGAGCAATTATTTATGCCTTGGGGGATTCAGATATATTTTATGGCTGAAGTCCAAAAGACAA
TTTTCAAAGCAGCTTTGTTGACCCATGTCATTGACCACGGGAAGCATCATCACCTTCTATTAAAATTTTTCAATGTTTTTAATGACAGAGAATCAAATAGTCAGTCTTGTTCCCATTGCGATGGGTGCTGTCAGATATTTATGGTCAAAACGAAAGACAGTGCTGGTTGGAGCTTACACATCTTATATAAACGAACTGCT
TTCAACAAAAGGACTGCATTTCCAGGATTGAAGCTAGTCCATGGCCGAATTGTGACAAATGTTTCATTTTGCCTATAACCTAACATGCCAAGTAATAGAGTTGAGTGAACT
Intron 4 GTGCGGCATT ... TTCATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.46 | 36 | 29 | 16 |
| A2 | 40.87 | 34 | 22 | 25 |
| A3 | 43.12 | 31 | 27 | 20 |
| A4 | 48.39 | 24 | 29 | 16 |
| A5 | 41.18 | 10 | 6 | 8 |
| A6 | 39.05 | 32 | 25 | 16 |
| A7 | 38.65 | 50 | 39 | 24 |
| A8 | 39.82 | 34 | 25 | 20 |
| A9 | 43.43 | 56 | 53 | 33 |
| A10 | 35.92 | 66 | 43 | 31 |
>TRINITY_DN111321_c0_g1_i15 from sample A2 / Example spliced isoformGGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTG
TTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGA
GATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAG
CAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGAAAGTTGC
AGATAGGCCAAGGGATCCTGCACAATGGGATGTAATTGGTCAGGTTGTTTCGGCATTGTCAATTCCTGTCATTGCCAATGGTGATGTTTTCGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGGTGCATCCTCCGTGATGGTGGCAAGAGGAGCTTTATGGAATGCTTCTATATTTCGACCTGAAGGGAAACTTC
CTTGGGAGGATGTGAAGAGAGAGTACTTACACAAGAGCTTTTTATGGGACAATAGCCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTTCCTGAGGGCAAGGCTGTTAACAAATGTCGAACATTAGCAGATTTAGCAGATGTTTATGGAGAACAAAACTTCTATAGAACTATT
CTGGAAGACCGAGAGTTATGGGCTGCTACAAGGAAGCTTAAACTATTTTGAGGACACTACCTATTATTAGACACTGAGATCGTCAAGATTCCAGCCTCAGGGTTTACCTAACAATGAAACCGTTGGCTGAGTCTAAAATATCTTTTCAAGGGTAAAGTGCAATGCCATCAGTTTATTTGAAAATATAAAATGGTGCATAC
ACTATTTCCTTCCACTTGATGCAAGTAGATCTTTATTGTCTGGGACATGAAGGACATCTTTACATGTGATTTCTTCTTCCAATAAAATGAGAAATAGAATCTTATGGCTGAGATAGCTATGAAATAATATTGTCTATCCTCTGAACTTCGGAAATTGGGTTCACAAGAATTGTTGTGGTGCAACACTAAAAATGTGTTTG
CATCTCCATTTTTGAAGGAGCAATTATTTATGCCTTGGGGGATTCAGATATATTTTATGGCTGAAGTCCAAAAGACAATTTTCAAAGCAGCTTTGTTGACCCATGTCATTGACCACGGGAAGCATCATCACCTTCTATTAAAATTTTTCAATGTTTTTAATGACAGAGAATCAAATAGTCAGTCTTGTTCCCATTGCCAT
GGGTGCTGTCAGATATTTATGGTCAAAACGAAAGACAGTGCTGGTTGGAGCTTACACATCTTATATAAACGAACTGCTTTCAACAAAAGGACTGCATTTCCAGGATTGAAGCTAGTCCATGGCCGAATTGTGACAAATGTTTCATTTTGCCTATAACCTAACATGCCAAGTAATAGAGTTGAGTGAACTATGAAATATTC
AGCTGCAGAGTAAAAGCGGGCATCTGTTAGCATTGTTTTGATTGGGAATTACTATTGGAGAGAAGATTTTTAGACTCAGCGTAAATGGTTTAAAAAATAAGAGCAATTGCTAAAGATTATTGAATCACCGCTGCAAACAGAATAGCAATTGTATTCATGTTCTTATAAACTTGGAAAAGGATCCACCCATTCGACAAGCA
TGGCAAACAATTTGACAATTGATTCACATCCCATTTGATGTGTAGTATCTTGTAATACATTCAAACATGCTGCGAGTTCAACAAATGTAGTGATCAACTTGGTATGGAATTGGCATCTTTGGTTGTTACCTCC
>TRINITY_DN111321_c0_g1_i5 from sample A2 / Example unspliced isoform:GGCCAATCACATATATCAGCGCGAAGAAATCTAACCTTATTGGCGGATAACAATTGGATATCCGCTCCATTAAATTTCGAGGTCTGACCAGTTTTATAGAGTCCGTCTCTATCTCGTTTACTGCCGCTGGATTGAAGTAAAACCACACATTCAAACCCTTGCACTGGAGGCAGGGTTGCCACTGCGCAGGGAGAAGTGTG
TTTTTCTGAATAAGATATCAAACTGCAGAGGCTCCTTTTAACCGCGGAGCGTCTGCTTTGAAGTTTGTCGGGGCGAGGAAGAAGATGGAGCCGATCAATTACAGGAACAAGCACATCCTCGCCCCTATGGTTCGCGTTGGAACACTACCATTCAGGATTCTGGCTGCTGACTATGGAGCAGACATTACATATGGGGAGGA
GATTGTTGATCATAAAATTGTCAAATGTTATCGGGAGATAAATGAAACTCTTGGGACGGTTGACTTTCTGGAGAAAGGAACAAATGATGTAATTTTTCGAACTTGCAATGAAGAAAGACACCGCGTGGTGTTTCAGCTTGGCACAGCGAATGCTGTACGCGCTCTGAATGCAGCTCAGCTTCTGTGTAAAGATGTCGCAG
CAATTGATATCAACATGGGGTGTCCCAAATCCTTTTCAATAAGTGGAGGCATGGgtgcggcattgctagccaagccagagctaattcatgacgtacttgtttatgttatatattcatttgatatgacaagagaactactttagtgttttcctaaaatggtcaatgaatttgagaaggaaatggctaatgccaattcaaat
tgcctttcattttagATTTTGACAACGTTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTGCTCAAATCACCTGAAGATACAATTGAATTGGCACGGAGAATCGAGAAAGTGGGTGTTTCTGCTATTGCTGTTCATGGGAGGTAAATTGCTTAATACTATTTTGTAAGTTGATAACATAGTTTGCGAGG
TTTGTTGTCTAGCAGTAGGTACTCCATGTTCATATGCATAGAATGACTTATAAATGGAAAGGGTTGTTGCTAATACATTAGAGATGAGTGAGATCCAGGACGATATCTTATTAAGATGCTGAGTGGTTACATGATTGGATGGGAGGTCGATGATCATCCACA