sp|O65570|VILI4_ARATH ----> Villin-4
Intron 1 GTATGCCTAT ... TTATGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.81 | 56 | 15 | 20 |
| A2 | 25.93 | 70 | 17 | 32 |
| A3 | 24.8 | 47 | 14 | 17 |
| A4 | 20.61 | 52 | 2 | 25 |
| A5 | 29.55 | 31 | 10 | 16 |
| A6 | 25 | 3 | 1 | 1 |
| A7 | 11.86 | 26 | 4 | 3 |
| A8 | 25 | 6 | 1 | 3 |
| A9 | 27.47 | 33 | 6 | 19 |
| A10 | 13.04 | 40 | 2 | 10 |
>TRINITY_DN114532_c0_g1_i2 from sample A2 / Example spliced isoformAGCGAGCAAATGATCGCGGAGACTCACTCTTTTTTTCCTTTGTCTTTACTTTTAGTTTTTCCTTCTTCCCAAAGTTGCTGCTGCTTTCGTTTGCTCGTCTCCGCTGGTTCCTGCGATTGCTTGCTTTCGAGATTCCTGAAGCTCAAGCGTTCGATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATTGGCTCTCCGCGT
GATCTTTACAGCCTAAGGTGACTACCTCAGCATTTTCCAAAGAAAAGTGGAGCAGTAAATCCGTCAAGAAAGCAGGGTCTAATATGGCTGTGTCTATGAGAGATGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCTGGGCTTGAGATATGGCGAATTGAGAATTTTCGACCCATGCCAGTTCCCAAATCTTCTTAT
GGAAAGTTCCGTAGTGGTGATTCCTATATTATTCTGAAGACAACAGCATTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATGAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCAAGGACATGA
AACAGATAAATTTCTATCATATTTTAAGCCATGCATCATACCCGAAGAAGGTGGCATTGCTTCAGGATTTAAACATGTTGAGGAGAAAGAGTATTCAATTCGCTTGTTTGCATGCAAGGGGAAGCATGTTGTGCATGTTACAGAGGTACCTTATTCTCGGTCATCTCTAAATCATGATGACATTTTTATTCTTGATACAA
AGTCCAAAATCTTTCAGTTTAACGGCTCCAACTCGTCCATTCAAGAAAGGGCCAAGGCTTTAGAGGTTGTTCAATATATCAAAGATAATTACCATGATGGAAAGTGTGAAGTGGCTGCAATTGAGGATGGCAAATTCGTAGCTGATCCTGAAACTGGAGAGTTTTGGAGTTTTTTTGGTGGTTTTGCCCCTCTTGCCAAG
AAGCTCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAGCGAAGCTATTCTGCATACAACAGGGCCATGCAAAACCCATTGAAGGCAATTCATTGACAAGAGGAATGCTGGACACAAACAGGTGTTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATCACTTGAGGATAGAAAAGC
AGGAAGCTCAGCTGCAGAAGAGCTGATTTCCGGCAAGGGAAAATTGAAACAAGCTCACATAACTCGTGTTATGGAAGGATTTGAAACTGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCA
AGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACCATTTATAGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATGGTAAAATCAAATCTCCTATGCCATCAAGTGAACAGTGCAAGTTTTACAGTGGTGATTGCTATATTGTGCAATATACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGC
ACTTGGATTGGAAAACGGAGCATTTCGGAAGAAAGGGTTGCCGCGCTATCACTAATGAATAAAATGGCGGAGTCATTGAAATCGCAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAGTTTTTTGCGATCTTGCAAAGCTTCATTGTCTTTAAGGGTGGTCTTAGCTCTGGATACAAGAGGTACATTGC
AGAAAAAGGGATTGCTGATGATACCTACAAAGAAGATGGACTGGCACTTTTTAGAGTGCAAGGAACTGGGCCTGAAAATATGCAAGCAATTCAAGTTGAACCGGTGGCAACATCTTTGAATTCATCGTATTGTTATATCTTGCAAGTGGGTGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTAGAAGACCAAG
AACTTGTTGAAAGGATGTTAGATTTGATAAAGCCTGACATGCAGTCGAAACCACAGAAAGAAGGAACTGAATCAGAGCTATTTTGGAATGCTCTTGGCAGTAAAAAGGAATACTCAAGTCAAAAGGCGGTTAAGGATGTTAGTAAAGATCCTCAATTGTTCGCATGCAGTTTTTCTAAAGGGACATTAACGGGTTTTTCA
GGTAGCTTGGAGGTAACAGAGATATTCAACTTCACTCAAGATGATCTAATGACTGAAGATGTGATGATTTTGGATTGCCATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCGAAATCTAAACAGCAGGCTCTAAATATTGGCCAGAAATTTCTAGAAAAGGATGTGCTACTTGAAAAGCTATCTTTGGAAAC
TCCTATATTTGTCATATTGGAGGGGAGTGAGCCACTTTTTTTCACGCGTTTCTTCTCTTGGGACTCATCAAAGTCAACAATGCATGGTAATTCGTTCCAAAGGAAGCTTTCCATAATGAAAACTGGAATATCACCAATTGTGGAAAAACCTAAGAGGCGTTCTGCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATA
AGTCACAGCGCTCTAGAAGCATGTCTTTCAGTCCAGATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTCTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCCTTGTCATCAGATGCTCTTAGCAAGACAGTTCCTCCAAGATCA
CAAGCAATAGCTGCTCTGACATCTGTATTTGAGCCCATGAAACAACGGAAACTATTGAGTGCTTTCACAGAAGTAAGCTCTGAAACTCAAGTTACTCAACCTACAAAGTCGGAGACAAATTCTGTTTCTACAAACAGTAGGGCAAATTCTCTTGTGAATAGCAGAACAAATTCTGTTTTGATGAGTAGCAGAATTGAAGC
ATTAACAATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGATGATGAAGGGCAGACTATTTTTCCCTTTGAACGTCTGAAAATATCATCCCCAGATCCTGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCAAAGGAAGATTTTCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCA
AGTGGAAGCAAAACAAGCATAAGATGGCCCTTGATTTATTCTAACATTCATCTGGCTACTTGGAAGGTGAAAGCTGAATTTGTAAAAGCAAATATGTATCAATGCCTGTAAGAATCTGTATAAATGCATTTTCCTATGGAGTCATCCAGCTATTTATGTTGCTTTTAAAAGCAAAAAGATAGATCTTCCTACCAAGACAA
TCTTTTCTTCAACGGATGAGAATTTTGAGTTTGTGTAGGGTATGACAACGAGCATTGTAGCCTGCCCCACACCAAAGAGCATGGTGCATTCCTGGGAGTTTGTGCATTTTTTCCGCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCTTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATAGTTATGAGAGG
CATTATAATCCAGTTAACAATAGAAGAGAAATCATGGTTATGAAGATTGTTGTTTCTCCTTTTGCAGAGGCAAGTTTATTTGTTGTATAGTCCATGTAACAAGTTGAAGTTGTCTGTTGGAGCATTCTTAATGGTGTCTTGTACAAGACACTTGTCATGTGTTCACCAAATATTCCCATTGCTTATTGTTTGAGAAATAA
AGTATGATTCTTTGTGTTTGAGAGAATTCCTAAGATCAAGACTTGCCTCGAGTACGTTTGGAATCTGAAAGTGTTGTGCTTTTATTGAGTTTACAAGGGAATTTTCTACTTATTCTTGGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTTGCAGCC
CACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTT
>TRINITY_DN114532_c0_g1_i7 from sample A2 / Example unspliced isoform:GGAGAGTCCCCAGCTTTGTCGGAGAGACCGTCGGATCTGCGGGCCGGATAATCCGACAACTAATTACGCCGACCTGGCATTCTTCCCTTCCCAATAACCTGACGAATCTTAGCGGAATATTTAATTTCGACGGTTGAAAACAGATCAATCCCCTTTGCAGAAGACACCCACGGGAAAAACCATGGTTTTACCAGCCCGAA
TCCGCAGGAGGAACATCAAAGTAAAATAAAATTCTATCGAGTGGGAACTTAACCCTAACCGGAGACCCGGAAGCCTAACCATGGCAGCCATAAAAAACTGGAGGTCATATATGAAGTAATGTGGGTCCGCCGAGGAGGGAGTGTAACAGAGGAAAAGCGTGGTTGGCATCGACGGAACTTTTGTCATAGTGGCCGGTCCG
CTGGCTTTCCCATGGCCGGTGGCCGACCTGGCATTCACAGAAAGCGAAAGCCCACAAAATAAAGTTTTTCCTTCTTCCCAAAGTTGCTGCTGCTTTCGTTTGCTCGTCTCCGCTGGTTCCTGCGATTGCTTGCTTTCGAGATTCCTGAAGCTCAAGCGTTCGATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATTGGC
TCTCCGCGTGATCTTTACAGCCTAAGGTGACTACCTCAGCATTTTCCAAAGAAAAGTGGAGCAGTAAATCCGTCAAGAAAGCAGGGTCTAATATGGCTGTGTCTATGAGAGATGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCTGGGCTTGAGATATGGCGAATTGAGAATTTTCGACCCATGCCAGTTCCCAAA
TCTTCTTATGGAAAGTTCCGTAGTGGTGATTCCTATATTATTCTGAAGACAACAGCATTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATGAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCA
AGGACATGAAACAGATAAATTTCTATCATATTTTAAGCCATGCATCATACCCGAAGAAGGTGGCATTGCTTCAGGATTTAAACATGTTGAGGAGAAAGAGTATTCAATTCGCTTGTTTGCATGCAAGGGGAAGCATGTTGTGCATGTTACAGAGgtatgcctattatattaataaaaaacagggtaaaatcagaagatat
caaatcattcgctgcttttatttaacctttgactaattgaatgtatggttatggacagGTACCTTATTCTCGGTCATCTCTAAATCATGATGACATTTTTATTCTTGATACAAAGTCCAAAATCTTTCAGTTTAACGGCTCCAACTCGTCCATTCAAGAAAGGGCCAAGGCTTTAGAGGTTGTTCAATATATCAAAGATA
ATTACCATGATGGAAAGTGTGAAGTGGCTGCAATTGAGGATGGCAAATTCGTAGCTGATCCTGAAACTGGAGAGTTTTGGAGTTTTTTTGGTGGTTTTGCCCCTCTTGCCAAGAAGCTCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAGCGAAGCTATTCTGCATACAACAGGGCCATGCAAAACCCATTGAA
GGCAATTCATTGACAAGAGGAATGCTGGACACAAACAGGTGTTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATCACTTGAGGATAGAAAAGCAGGAAGCTCAGCTGCAGAAGAGCTGATTTCCGGCAAGGGAAAATTGAAACAAGCTCACATAACTCGTGTTATGGAAGGATTTGAAAC
TGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACCATTTATAGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATG
GTAAAATCAAATCTCCTATGCCATCAAGTGAACAGTGCAAGTTTTACAGTGGTGATTGCTATATTGTGCAATATACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAACGGAGCATTTCGGAAGAAAGGGTTGCCGCGCTATCACTAATGAATAAAATGGCGGAGTCATTGAAATCGCAA
CCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAGTTTTTTGCGATCTTGCAAAGCTTCATTGTCTTTAAGGGTGGTCTTAGCTCTGGATACAAGAGGTACATTGCAGAAAAAGGGATTGCTGATGATACCTACAAAGAAGATGGACTGGCACTTTTTAGAGTGCAAGGAACTGGGCCTGAAAATATGCAAGC
AATTCAAGTTGAACCGGTGGCAACATCTTTGAATTCATCGTATTGTTATATCTTGCAAGTGGGTGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTAGAAGACCAAGAACTTGTTGAAAGGATGTTAGATTTGATAAAGCCTGACATGCAGTCGAAACCACAGAAAGAAGGAACTGAATCAGAGCTATTTTGGA
ATGCTCTTGGCAGTAAAAAGGAATACTCAAGTCAAAAGGCGGTTAAGGATGTTAGTAAAGATCCTCAATTGTTCGCATGCAGTTTTTCTAAAGGGACATTAACGGGTTTTTCAGGTAGCTTGGAGGTAACAGAGATATTCAACTTCACTCAAGATGATCTAATGACTGAAGATGTGATGATTTTGGATTGCCATTCGGAA
ATCTATGTTTGGGTTGGCCAACAGGTTGACTCGAAATCTAAACAGCAGGCTCTAAATATTGGCCAGAAATTTCTAGAAAAGGATGTGCTACTTGAAAAGCTATCTTTGGAAACTCCTATATTTGTCATATTGGAGGGGAGTGAGCCACTTTTTTTCACGCGTTTCTTCTCTTGGGACTCATCAAAGTCAACAATGCATGG
TAATTCGTTCCAAAGGAAGCTTTCCATAATGAAAACTGGAATATCACCAATTGTGGAAAAACCTAAGAGGCGTTCTGCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGCGCTCTAGAAGCATGTCTTTCAGTCCAGATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTG
CCTTTGAGAGTCCAAATGGAAGGAATCTCTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCCTTGTCATCAGATGCTCTTAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTATTTGAGCCCATGAAACAACGGAAACTATTGAGTGCTTTCACAGAAGTAAGCTCTGAAACT
CAAGTTACTCAACCTACAAAGTCGGAGACAAATTCTGTTTCTACAAACAGTAGGGCAAATTCTCTTGTGAATAGCAGAACAAATTCTGTTTTGATGAGTAGCAGAATTGAAGCATTAACAATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGATGATGAAGGGCAGACTATTTTTCCCTTTGAACGTCTGAAAATATC
ATCCCCAGATCCTGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCAAAGGAAGATTTTCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGGCCCTTGATTTATTCTAACATTCATCTGGCTACTTGGAAGGTGAAAGCTGAATTTGTAAAA
GCAAATATGTATCAATGCCTGTAAGAATCTGTATAAATGCATTTTCCTATGGAGTCATCCAGCTATTTATGTTGCTTTTAAAAGCAAAAAGATAGATCTTCCTACCAAGACAATCTTTTCTTCAACGGATGAGAATTTTGAGTTTGTGTAGGGTATGACAACGAGCATTGTAGCCTGCCCCACACCAAAGAGCATGGTGC
ATTCCTGGGAGTTTGTGCATTTTTTCCGCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCTTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATAGTTATGAGAGGCATTATAATCCAGTTAACAATAGAAGAGAAATCATGGTTATGAAGATTGTTGTTTCTCCTTTTGCAGAGGCAAGTTTATTTGTTGTA
TAGTCCATGTAACAAGTTGAAGTTGTCTGTTGGAGCATTCTTAATGGTGTCTTGTACAAGACACTTGTCATGTGTTCACCAAATATTCCCATTGCTTATTGTTTGAGAAATAAAGTATGATTCTTTGTGTTTGAGAGAATTCCTAAGATCAAGACTTGCCTCGAGTACGTTTGGAATCTGAAAGTGTTGTGCTTTTATTG
AGTTTACAAGGGAATTTTCTACTTATTCTTGGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTT
Intron 2 GTAAGAATCT ... GTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 89.47 | 6 | 54 | 48 |
| A2 | 86.36 | 6 | 48 | 28 |
| A3 | 72.06 | 19 | 59 | 39 |
| A4 | 86.67 | 5 | 44 | 21 |
| A5 | 83.05 | 5 | 19 | 30 |
| A6 | 78.53 | 19 | 76 | 63 |
| A7 | 76.69 | 31 | 113 | 91 |
| A8 | 80 | 41 | 174 | 154 |
| A9 | 78.4 | 31 | 135 | 90 |
| A10 | 78.46 | 21 | 92 | 61 |
>TRINITY_DN105663_c0_g2_i8 from sample A4 / Example spliced isoformCCGACAACTAATTACGCCGACCTGGCATTCTTCCCTTCCCAATAACCTGACGAATCTTAGCGGAATATTTAATTTCGACGGTTGAAAACAGATCAATCCCCTTTGCAGAAGACACCCACGGGAAAAACCATGGTTTTACCAGCCCGAATCCGCAGGAGGAACATCAAAGTAAAATAAAATTCTATCGAGTGGGAACTTAA
CCCTAACCGGAGACCCGGAAGCCTAACCATGGCAGCCATAAAAAACTGGAGGTCATATATGAAGTAATGTGGGTCCGCCGAGGAGGGAGTGTAACAGAGGAAAAGCGTGGTTGGCATCGACGGAACTTTTGTCATAGTGGCCGGTCCGCTGGCTTTCCCATGGCCGGTGGCCGACCTGGCATTCACAGAAAGCGAAAGCC
CACAAAATAAAGTTTTTCCTTCTTCCCAAAGTTGCTGCTGCTTTCGTTTGCTCGTCTCCGCTGGTTCCTGCGATTGCTTGCTTTCGAGATTCCTGATGCTCAAGCGTTCGATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATTGGCTCTCCGCGTGATCTTTACAGCCTAAGGTGACTACCTCAGCATTTTCCAAAGA
AAAGTGGAGCAGTAAATCCGTCAAGAAAGCAGGGTCTAATATGGCTGTGTCTATGAGAGATGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCTGGGCTTGAGATATGGCGAATTGAGAATTTTCGACCCATGCCAGTTCCCAAATCTTCTTATGGAAAGTTCCGTAGTGGTGATTCCTATATTATTCTGAAGACAA
CAGCATTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATGAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCAAGGACATGAAACAGATAAATTTCTATCATATTTTAAGCCATGCATCATACCC
GAAGAAGGTGGCATTGCTTCAGGATTTAAACATGTTGAGGAGAAAGAGTATTCAATTCGCTTGTTTGCATGCAAGGGGAAGCATGTTGTGCATGTTACAGAGGTACCTTATTCTCGGTCATCTCTAAATCATGATGACATTTTTATTCTTGATACAAAGTCCAAAATCTTTCAGTTTAACGGCTCCAACTCGTCCATTCA
AGAAAGGGCCAAGGCTTTAGAGGTTGTTCAATATATCAAAGATAATTACCATGATGGAAAGTGTGAAGTGGCTGCAATTGAGGATGGCAAATTCGTAGCTGATCCTGAAACTGGAGAGTTTTGGAGTTTTTTTGGTGGTTTTGCCCCTCTTGCCAAGAAGCTCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAG
CGAAGCTATTCTGCATACAACAGGGCCATGCAAAACCCATTGAAGGCAATTCATTGACAAGAGGAATGCTGGACACAAACAGGTGTTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATCACTTGAGGATAGAAAAGCAGGAAGCTCAGCTGCAGAAGAGCTGATTTCCGGCAAGGGAAAA
TTGAAACAAGCTCACATAACTCGTGTTATGGAAGGATTTGAAACTGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACC
ATTTATAGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATGGTAAAATCAAATCTCCTATGCCATCAAGTGAACAGTGCAAGTTTTACAGTGGTGATTGCTATATTGTGCAATATACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAACGGAGCATTTCGGAAGAAAGGGTTGCCG
CGCTATCACTAATGAATAAAATGGCGGAGTCATTGAAATCGCAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAGTTTTTTGCGATCTTGCAAAGCTTCATTGTCTTTAAGGGTGGTCTTAGCTCTGGATACAAGAGGTACATTGCAGAAAAAGGGATTGCTGATGATACCTACAAAGAAGATGGACTG
GCACTTTTTAGAGTGCAAGGAACTGGGCCTGAAAATATGCAAGCAATTCAAGTTGAACCGGTGGCAACATCTTTGAATTCATCGTATTGTTATATCTTGCAAGTGGGTGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTAGAAGACCAAGAACTTGTTGAAAGGATGTTAGATTTGATAAAGCCTGACATGCA
GTCGAAACCACAGAAAGAAGGAACTGAATCAGAGCTATTTTGGAATGCTCTTGGCAGTAAAAAGGAATACTCAAGTCAAAAGGCGGTTAAGGATGTTAGTAAAGATCCTCAATTGTTCGCATGCAGTTTTTCTAAAGGGACATTAACGGGTTTTTCAGGTAGCTTGGAGCTGCAGGTAACAGAGATATTCAACTTCACTC
AAGATGATCTAATGACTGAAGATGTGATGATTTTGGATTGCCATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCGAAATCTAAACAGCAGGCTCTAAATATTGGCCAGAAATTTCTAGAAAAGGATGTGCTACTTGAAAAGCTATCTTTGGAAACTCCTATATTTGTCATATTGGAGGGGAGTGAGCCACTT
TTTTTTCACGCGTTTCTTCTCTTGGGACTCATCAAAGTCAACAATGCATGGTAATTCGTTCCAAAGGAAGCTTTCCATAATGAAAACTGGAATATCACCAATTGTGGAAAAACCTAAGAGGCGTTCTGCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGCGCTCTAGAAGCATGTCTTTTAGTCCAG
ATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTCTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCCTTGTCATCAGATGCTCTTAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTATTTGAGCCC
ATGAAACAACGGAAACTATTGAGTGCTTTCACAGAAGTAAGCTCTGAAACTCAAGTTACTCAACCTACAAAGTCGGAGACAAATTCTGTTTCTACAAACAGTAGGGCAAATTCTCTTGTGAATAGCAGAACAAATTCTGTTTTGATGAGTAGCAGAATTGAAGCATTAACAATAAAAGAGGACATCAAGGAAGAGGAAGC
TGAAGATGATGAAGGGCAGACTATTTTTCCCTTTGAACGTCTGAAAATATCATCCCCAGATCCTGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCAAAGGAAGATTTTCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGGCCCTTGATT
TATTCTAACATTCATCTGGCTACTTGGAAGGTGAAAGCTGAATTTGTAAAAGCAAATATGTATCAATGCCTGGTATGACAACGAGCA
>TRINITY_DN105663_c0_g2_i11 from sample A4 / Example unspliced isoform:CCGACAACTAATTACGCCGACCTGGCATTCTTCCCTTCCCAATAACCTGACGAATCTTAGCGGAATATTTAATTTCGACGGTTGAAAACAGATCAATCCCCTTTGCAGAAGACACCCACGGGAAAAACCATGGTTTTACCAGCCCGAATCCGCAGGAGGAACATCAAAGTAAAATAAAATTCTATCGAGTGGGAACTTAA
CCCTAACCGGAGACCCGGAAGCCTAACCATGGCAGCCATAAAAAACTGGAGGTCATATATGAAGTAATGTGGGTCCGCCGAGGAGGGAGTGTAACAGAGGAAAAGCGTGGTTGGCATCGACGGAACTTTTGTCATAGTGGCCGGTCCGCTGGCTTTCCCATGGCCGGTGGCCGACCTGGCATTCACAGAAAGCGAAAGCC
CACAAAATAAAGTTTTTCCTTCTTCCCAAAGTTGCTGCTGCTTTCGTTTGCTCGTCTCCGCTGGTTCCTGCGATTGCTTGCTTTCGAGATTCCTGATGCTCAAGCGTTCGATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATTGGCTCTCCGCGTGATCTTTACAGCCTAAGGTGACTACCTCAGCATTTTCCAAAGA
AAAGTGGAGCAGTAAATCCGTCAAGAAAGCAGGGTCTAATATGGCTGTGTCTATGAGAGATGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCTGGGCTTGAGATATGGCGAATTGAGAATTTTCGACCCATGCCAGTTCCCAAATCTTCTTATGGAAAGTTCCGTAGTGGTGATTCCTATATTATTCTGAAGACAA
CAGCATTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATGAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCAAGGACATGAAACAGATAAATTTCTATCATATTTTAAGCCATGCATCATACCC
GAAGAAGGTGGCATTGCTTCAGGATTTAAACATGTTGAGGAGAAAGAGTATTCAATTCGCTTGTTTGCATGCAAGGGGAAGCATGTTGTGCATGTTACAGAGGTACCTTATTCTCGGTCATCTCTAAATCATGATGACATTTTTATTCTTGATACAAAGTCCAAAATCTTTCAGTTTAACGGCTCCAACTCGTCCATTCA
AGAAAGGGCCAAGGCTTTAGAGGTTGTTCAATATATCAAAGATAATTACCATGATGGAAAGTGTGAAGTGGCTGCAATTGAGGATGGCAAATTCGTAGCTGATCCTGAAACTGGAGAGTTTTGGAGTTTTTTTGGTGGTTTTGCCCCTCTTGCCAAGAAGCTCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAG
CGAAGCTATTCTGCATACAACAGGGCCATGCAAAACCCATTGAAGGCAATTCATTGACAAGAGGAATGCTGGACACAAACAGGTGTTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATCACTTGAGGATAGAAAAGCAGGAAGCTCAGCTGCAGAAGAGCTGATTTCCGGCAAGGGAAAA
TTGAAACAAGCTCACATAACTCGTGTTATGGAAGGATTTGAAACTGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACC
ATTTATAGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATGGTAAAATCAAATCTCCTATGCCATCAAGTGAACAGTGCAAGTTTTACAGTGGTGATTGCTATATTGTGCAATATACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAACGGAGCATTTCGGAAGAAAGGGTTGCCG
CGCTATCACTAATGAATAAAATGGCGGAGTCATTGAAATCGCAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAGTTTTTTGCGATCTTGCAAAGCTTCATTGTCTTTAAGGGTGGTCTTAGCTCTGGATACAAGAGGTACATTGCAGAAAAAGGGATTGCTGATGATACCTACAAAGAAGATGGACTG
GCACTTTTTAGAGTGCAAGGAACTGGGCCTGAAAATATGCAAGCAATTCAAGTTGAACCGGTGGCAACATCTTTGAATTCATCGTATTGTTATATCTTGCAAGTGGGTGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTAGAAGACCAAGAACTTGTTGAAAGGATGTTAGATTTGATAAAGCCTGACATGCA
GTCGAAACCACAGAAAGAAGGAACTGAATCAGAGCTATTTTGGAATGCTCTTGGCAGTAAAAAGGAATACTCAAGTCAAAAGGCGGTTAAGGATGTTAGTAAAGATCCTCAATTGTTCGCATGCAGTTTTTCTAAAGGGACATTAACGGGTTTTTCAGGTAGCTTGGAGGTAACAGAGATATTCAACTTCACTCAAGATG
ATCTAATGACTGAAGATGTGATGATTTTGGATTGCCATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCGAAATCTAAACAGCAGGCTCTAAATATTGGCCAGAAATTTCTAGAAAAGGATGTGCTACTTGAAAAGCTATCTTTGGAAACTCCTATATTTGTCATATTGGAGGGGAGTGAGCCACTTTTTTTC
ACGCGTTTCTTCTCTTGGGACTCATCAAAGTCAACAATGCATGGTAATTCGTTCCAAAGGAAGCTTTCCATAATGAAAACTGGAATATCACCAATTGTGGAAAAACCTAAGAGGCGTTCTGCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGCGCTCTAGAAGCATGTCTTTTAGTCCAGATCGAGT
TCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTCTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCCTTGTCATCAGATGCTCTTAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTATTTGAGCCCATGAAAC
AACGGAAACTATTGAGTGCTTTCACAGAAGTAAGCTCTGAAACTCAAGTTACTCAACCTACAAAGTCGGAGACAAATTCTGTTTCTACAAACAGTAGGGCAAATTCTCTTGTGAATAGCAGAACAAATTCTGTTTTGATGAGTAGCAGAATTGAAGCATTAACAATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGAT
GATGAAGGGCAGACTATTTTTCCCTTTGAACGTCTGAAAATATCATCCCCAGATCCTGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCAAAGGAAGATTTTCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGGCCCTTGATTTATTCTA
ACATTCATCTGGCTACTTGGAAGGTGAAAGCTGAATTTGTAAAAGCAAATATGTATCAATGCCTgtaagaatctgtataaatgcattttcctatggagtcatccagctatttatgttgcttttaaaagcaaaaagatagatcttcctaccaagacaatcttttcttcaacggatgagaattttgagtttgtgtagGGTAT
GACAACGAGCATTGTAGCCTGCCCCACACCAAAGAGCATGGTGCATTCCTGGGAGTTTGTGCATTTTTTCCGCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCTTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATAGTTATGAGAGGCATTATAATCCAGTTAACAATAGAAGAGAAATCATGGTTATGA
AGATTGTTGTTTCTCCTTTTGCAGAGGCAAGTTTATTTGTTGTATAGTCCATGTAACAAGTTGAAGTTGTCTGTTGGAGCATTCTTAATGGTGTCTTGTACAAGACACTTGTCATGTGTTCACCAAATATTCCCATTGCTTATTGTTTGAGAAATAAAGTATGATTCTTTGTGTTTGAGAGAATTCCTAAGATCAAGACT
TGCCTCGAGTACGTTTGGAATCTGAAAGTGTTGTGCTTTTATTGAGTTTACAAGGGAATTTTCTACTTATTCTTGGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAAAAA
Intron 3 GTATGTACTC ... TTTTGGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.91 | 49 | 0 | 6 |
| A2 | 19.61 | 41 | 1 | 10 |
| A3 | 8.33 | 33 | 1 | 3 |
| A4 | 24.24 | 50 | 0 | 16 |
| A5 | 21.05 | 15 | 1 | 4 |
| A6 | 18.75 | 13 | 0 | 3 |
| A7 | 6.25 | 30 | 0 | 2 |
| A8 | 0 | 13 | 0 | 0 |
| A9 | 22.58 | 24 | 0 | 7 |
| A10 | 6.12 | 46 | 0 | 3 |
>TRINITY_DN114532_c0_g1_i3 from sample A2 / Example spliced isoformCTTTAGAGGTTGTTCAATATCAAAGATAATTACCATGATGGAAAGTGTGAAGTGGCTGCAATTGAGGATGGCAAATTCGTAGCTGATCCTGAAACTGGAGAGTTTTGGAGTTTTTTTGGTGGTTTTGCCCCTCTTGCCAAGAAGCTCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAGCGAAGCTATTCTGCAT
ACAACAGGGCCATGCAAAACCCATTGAAGGCAATTCATTGACAAGAGGAATGCTGGACACAAACAGGTGTTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATCACTTGAGGATAGAAAAGCAGGAAGCTCAGCTGCAGAAGAGCTGATTTCCGGCAAGGGAAAATTGAAACAAGCTCACA
TAACTCGTGTTATGGAAGGATTTGAAACTGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACCATTTATAGATTGTACT
GGCAATCTTCAGGTGCTGTCCCGATATATTTCCTTGTGACAAAAAGATCATTT
>TRINITY_DN114532_c0_g1_i8 from sample A2 / Example unspliced isoform:AGCAGGAAGCTCAGCTGCAGAAgtatgtactcaaaacattgtattattatctgttccatgaatctgaatggtttggggataaaccattaatgttttcacaaacattattcaaatcatcaatttcttgtttttttggttagGAGCTGATTTCCGGCAAGGGAAAATTGAAACAAGCTCACATAACTCGTGTTATGGAAGGA
TTTGAAACTGTTATGTTTAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTTTGTCTGAAGATGGAAGAGGCAAAGTGGCAGCCTTGCTGAAACGGCAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGTAAAAGAGGAAAATCAACCATTTATAGATTGTACTGGCAATCTTCAGGTTTGGCG
AGTAAATGGTAAAATCAAATCTCCTATGCCATCAAGTGAACAGTGCAAGTTTTACAGTGGTGATTGCTATATTGTGCAATATACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAACGGAGCATTTCGGAAGAAAGGGTTGCCGCGCTATCACTAATGAATAAAATGGCGGAGTCATTGA
AATCGCAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAGTTTTTTGCGATCTTGCAAAGCTTCATTGTCTTTAAGGGTGGTCTTAGCTCTGGATACAAGAGGTACATTGCAGAAAAAGGGATTGCTGATGATACCTACAAAGAAGATGGACTGGCACTTTTTAGAGTGCAAGGAACTGGGCCTGAAAAT
ATGCAAGCAATTCAAGTTGAACCGGTGGCAACATCTTTGAATTCATCGTATTGTTATATCTTGCAAGTGGGTGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTAGAAGACCAAGAACTTGTTGAAAGGATGTTAGATTTGATAAAGCCTGACATGCAGTCGAAACCACAGAAAGAAGGAACTGAATCAGAGCT
ATTTTGGAATGCTCTTGGCAGTAAAAAGGAATACTCAAGTCAAAAGGCGGTTAAGGATGTTAGTAAAGATCCTCAATTGTTCGCATGCAGTTTTTCTAAAGGGACATTAACGGGTTTTTCAGGTAGCTTGGAGGTAACAGAGATATTCAACTTCACTCAAGATGATCTAATGACTGAAGATGTGATGATTTTGGATTGCC
ATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCGAAATCTAAACAGCAGGCTCTAAATATTGGCCAGAAATTTCTAGAAAAGGATGTGCTACTTGAAAAGCTATCTTTGGAAACTCCTATATTTGTCATATTGGAGGGGAGTGAGCCACTTTTTTTCACGCGTTTCTTCTCTTGGGACTCATCAAAGTCAACA
ATGCATGGTAATTCGTTCCAAAGGAAGCTTTCCATAATGAAAACTGGAATATCACCAATTGTGGAAAAACCTAAGAGGCGTTCTGCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGCGCTCTAGAAGCATGTCTTTCAGTCCAGATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTT
GGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTCTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCCTTGTCATCAGATGCTCTTAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTATTTGAGCCCATGAAACAACGGAAACTATTGAGTGCTTTCACAGAAGTAAGCT
CTGAAACTCAAGTTACTCAACCTACAAAGTCGGAGACAAATTCTGTTTCTACAAACAGTAGGGCAAATTCTCTTGTGAATAGCAGAACAAATTCTGTTTTGATGAGTAGCAGAATTGAAGCATTAACAATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGATGATGAAGGGCAGACTATTTTTCCCTTTGAACGTCTG
AAAATATCATCCCCAGATCCTGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCAAAGGAAGATTTTCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGGCCCTTGATTTATTCTAACATTCATCTGGCTACTTGGAAGGTGAAAGCTGAAT
TTGTAAAAGCAAATATGTATCAATGCCTGTAAGAATCTGTATAAATGCATTTTCCTATGGAGTCATCCAGCTATTTATGTTGCTTTTAAAAGCAAAAAGATAGATCTTCCTACCAAGACAATCTTTTCTTCAACGGATGAGAATTTTGAGTTTGTGTAGGGTATGACAACGAGCATTGTAGCCTGCCCCACACCAAAGAG
CATGGTGCATTCCTGGGAGTTTGTGCATTTTTTCCGCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCTTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATAGTTATGAGAGGCATTATAATCCAGTTAACAATAGAAGAGAAATCATGGTTATGAAGATTGTTGTTTCTCCTTTTGCAGAGGCAAGTTTAT
TTGTTGTATAGTCCATGTAACAAGTTGAAGTTGTCTGTTGGAGCATTCTTAATGGTGTCTTGTACAAGACACTTGTCATGTGTTCACCAAATATTCCCATTGCTTATTGTTTGAGAAATAAAGTATGATTCTTTGTGTTTGAGAGAATTCCTAAGATCAAGACTTGCCTCGAGTACGTTTGGAATCTGAAAGTGTTGTGC
TTTTATTGAGTTTACAAGGGAATTTTCTACTTATTCTTGGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTTGCAGCCCACAGTTAATCTATTTATTTCTAAGATGGGTATTCAGCTTCAATTTT