sp|O64644|SAP18_ARATH ----> Histone deacetylase complex subunit SAP18

Intron 1 GTAAAAATAA ... GCCCTCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	48.15	7	12	1
A2	63.64	2	6	1
A3	53.85	3	7	0
A4	100	0	3	4
A5	60	1	1	2
A6	67.21	10	23	18
A7	57.67	20	29	25.5
A8	48	13	17	7
A9	69.23	12	33	21
A10	70.91	8	25	14

>TRINITY_DN45573_c0_g2_i3 from sample A8 / Example spliced isoform

ATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCAGGAAGCTGGTTATGAGAGTCAGGAATTTGAGAGTCGTGACTACCCCGGTCCCCAGCTAAATGCATGAAATCCAATTCCAAACCCATGAAAACCCTGAACAATAGAGCAAAAAAATTGGGATCGATTGAAGAAGAGCTGGAGAACAAACTGGAAATGAGCG
TAGAAGGCAGGGTTCTAGTCTTCGTGAAAATAAATTGATGCAACTAAAGAGTCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGCATCTCCCTCCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATGATATTGCAGAGGAATTTGAA
GTTAGAGGCAAAGATCCAAAAGATGAGGTGCAAATTTACACTTGGAGAGATGCTACACTTTGAGAGCTAAAAATCCTGGTAGGCATTCACACTTTCACATTCACTCTCCCAAGTGTTCTTTGTTGACATTGTTAAAAAACATTATGTGCAAAACAAGATTCTTGTGCAATGATAGATGTGTAACATTTGACATTTAATAG
CCTACTTAATGCCACATGCCTTAATGATTGTCATTTGACGAAAGAGTTTCCATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAACAAAAAATGCTAATTTTTGGGTAGGAATTCTCAAGCCTACGGGATTTGTAGTAAAATTTAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAA

>TRINITY_DN45573_c0_g2_i4 from sample A8 / Example unspliced isoform:

ATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCAGGAAGCTGGTTATGAGAGTCAGGAATTTGAGAGTCGTGACTACCCCGGTCCCCAGCTAAATGCATGAAATCCAATTCCAAACCCATGAAAACCCTGAACAATAGAGCAAAAAATTGGGATCGATTGAAGAAGAGCTGGAGAACAAACTGGAAATGAGCGT
AGAAGGCAGGGTTCTAGTCTTCGTGAAAATAAATTGATGCAACTAAAGAGTCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGgtaaaaataaatctcttcatcatttcatttctgtcttttaaatggtagaagtgaggaatattcctct
tccaatgcgaatggaatctcagacctacagtatccttggtacgctgatgattccgatctgatgattctgatctttctagacactaatatggatacccatctggccctctcagCATCTCCCTCCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATGATATTGCAGAGGAATTTGAAGTTAGAGGCAAAGATCCAAAAG
ATGAGGTGCAAATTTACACTTGGAGAGATGCTACACTTTGAGAGCTAAAAATCCTGGTAGGCATTCACACTTTCACATTCACTCTCCCAAGTGTTCTTTGTTGACATTGTTAAAAAACATTATGTGCAAAACAAGATTCTTGTGCAATGATAGATGTGTAACATTTGACATTTAATAGCCTACTTAATGCCACATGCCTT
AATGATTGTCATTTGACGAAAGAGTTTCCATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAACAAAAAATGCTAATTTTTGGGTAGGAATTCTCAAGCCTACGGGATTTGTAGTAAAATTTAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAA

Intron 2 GTAAAAATAA ... ATCTTTCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.89	16	12	1
A2	53.85	3	6	1
A3	25.93	10	7	0
A4	44.44	5	3	5
A5	50	1	1	1
A6	65.52	10	23	15
A7	54.55	20	29	19
A8	42.86	16	17	7
A9	53.68	22	33	18
A10	42.5	23	25	9

>TRINITY_DN45573_c0_g2_i1 from sample A8 / Example spliced isoform

ATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCAGGAAGCTGGTTATGAGAGTCAGGAATTTGAGAGTCGTGACTACCCCGGTCCCCAGCTAAATGCATGAAATCCAATTCCAAACCCATGAAAACCCTGAACAATAGAGCAAAAAAATTGGGATCGATTGAAGAAGAGCTGGAGAACAAACTGGAAATGAGCG
TAGAAGGCAGGGTTCTAGTCTTCGTGAAAATAAATTGATGCAACTAAAGAGTCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGACACTAATATGGATACCCATCTGGCCCTCTCAGCATCTCCCTCCCTCAGAGACTATTGATGATCTT
AGAGGAAGTCATGATATTGCAGAGGAATTTGAAGTTAGAGGCAAAGATCCAAAAGATGAGGTGCAAATTTACACTTGGAGAGATGCTACACTTTGAGAGCTAAAAATCCTGGTAGGCATTCACACTTTCACATTCACTCTCCCAAGTGTTCTTTGTTGACATTGTTAAAAAACATTATGTGCAAAACAAGATTCTTGTGC
AATGATAGATGTGTAACATTTGACATTTAATAGCCTACTTAATGCCACATGCCTTAATGATTGTCATTTGACGAAAGAGTTTCCATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAACAAAAAATGCTAATTTTTGGGTAGGAATTCTCAAGCCTACGGGATTTGTAGTAAAATTTAGAGACAAAGCATTGC
CAAAATCTCTTGGAGCATGATTGGCGCTAA

>TRINITY_DN45573_c0_g2_i4 from sample A8 / Example unspliced isoform:

ATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCAGGAAGCTGGTTATGAGAGTCAGGAATTTGAGAGTCGTGACTACCCCGGTCCCCAGCTAAATGCATGAAATCCAATTCCAAACCCATGAAAACCCTGAACAATAGAGCAAAAAATTGGGATCGATTGAAGAAGAGCTGGAGAACAAACTGGAAATGAGCGT
AGAAGGCAGGGTTCTAGTCTTCGTGAAAATAAATTGATGCAACTAAAGAGTCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGgtaaaaataaatctcttcatcatttcatttctgtcttttaaatggtagaagtgaggaatattcctct
tccaatgcgaatggaatctcagacctacagtatccttggtacgctgatgattccgatctgatgattctgatctttctagACACTAATATGGATACCCATCTGGCCCTCTCAGCATCTCCCTCCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATGATATTGCAGAGGAATTTGAAGTTAGAGGCAAAGATCCAAAAG
ATGAGGTGCAAATTTACACTTGGAGAGATGCTACACTTTGAGAGCTAAAAATCCTGGTAGGCATTCACACTTTCACATTCACTCTCCCAAGTGTTCTTTGTTGACATTGTTAAAAAACATTATGTGCAAAACAAGATTCTTGTGCAATGATAGATGTGTAACATTTGACATTTAATAGCCTACTTAATGCCACATGCCTT
AATGATTGTCATTTGACGAAAGAGTTTCCATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAACAAAAAATGCTAATTTTTGGGTAGGAATTCTCAAGCCTACGGGATTTGTAGTAAAATTTAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAA