sp|Q6L4S3|HIRL1_ORYSJ ----> Hypersensitive-induced response protein-like protein 1

Intron 1 GCTATGACGA ... ATAAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	72.97	55	141	156
A2	65.15	88	155	174
A3	71.82	52	120	145
A4	71.43	40	87	113
A5	71.56	30	71	80
A6	68.09	232	437	553
A7	70.7	242	491	677
A8	69.78	254	459	714
A9	70.66	262	560	702
A10	69.08	235	452	598

>TRINITY_DN109715_c1_g2_i2 from sample A4 / Example spliced isoform

GAAAGCAGTGGATGCTTTTTATAAGCTTAGCAATACAAAGGAGCAGATCCAAGCTTATGTCTTTGATGTCATTCGGGCATGTGTCCCAAAGATGAACTTGGATGCAGTATTTGAGCAAAAGAATGACGTTGCTAAAGCTGTTGAAGCGGAACTCGAAAAGCTGCAAGAATGAGGGTGGCAACACAAGATAAAGCTGAGGC
AGAGAAAATCTTGCAAATTAAACGAGCGGAAGCTGAAGCAGAATCGAAGTATTTGTCTGGATTGGGTATTGCTCGTCAACGGCAAGCAATTGTGGATGGACTTCGGGAAAGTGTTCTTGCTTTCTCAGACAATGTGCCTGGGACAACCGCAAAAGATGTCATGGACATGGTCTTGGTGACACAATATTTTGACACAATGA
AAGAGATAGGAGCATCGTCAAAGTCATCAGCAGTATTCATCCCCCATGGACCTGGTGCAGTTCGTGAAGTTGCTGCGCAGATCAGAGATGGATTACTTCAGGCACAGGCTCATGAAACATCATAATGGTTTCTGGCTACAGAACAAAAGTGTTTCATGTAACATATGTATCTTGGATTGCCATTTGCCTTTGTCTGATAT
TCTGATAGACCTGTAGCAGTTTTCATGAAGTGTTGAATTTTAGAATAAAAGCACATCATGTGCAACAATGTTTATAGTTTGCTTTTTGCCTTTTGAGGAATCCTTACAGAGCTGTAGTATTATTTTATAAGTGCTTATTAGTAAATACTTCAACCTTGTATATGAAGTTTGATTAGAAAATATGCATAAATGCACAACAG
TCATTAGCC

>TRINITY_DN109715_c1_g2_i1 from sample A4 / Example unspliced isoform:

GAAAGCAGTGGATGCTTTTTATAAGCTTAGCAATACAAAGGAGCAGATCCAAGCTTATGTCTTTGATGTCATTCGGGCATGTGTCCCAAAGATGAACTTGGATGCAGTATTTGAGCAAAAGAATGACGTTGCTAAAGCTGTTGAAGCGGAACTCGAAAAGgctatgacgaactatggatttgagatagtgcaaactctca
ttattgatatagtacccgctgaaactgtgaagaaagcaatgaatgaaataaatgcagCTGCAAGAATGAGGGTGGCAACACAAGATAAAGCTGAGGCAGAGAAAATCTTGCAAATTAAACGAGCGGAAGCTGAAGCAGAATCGAAGTATTTGTCTGGATTGGGTATTGCTCGTCAACGGCAAGCAATTGTGGATGGACTT
CGGGAAAGTGTTCTTGCTTTCTCAGACAATGTGCCTGGGACAACCGCAAAAGATGTCATGGACATGGTCTTGGTGACACAATATTTTGACACAATGAAAGAGATAGGAGCATCGTCAAAGTCATCAGCAGTATTCATCCCCCATGGACCTGGTGCAGTTCGTGAAGTTGCTGCGCAGATCAGAGATGGATTACTTCAGGC
ACAGGCTCATGAAACATCATAATGGTTTCTGGCTACAGAACAAAAGTGTTTCATGTAACATATGTATCTTGGATTGCCATTTGCCTTTGTCTGATATTCTGATAGACCTGTAGCAGTTTTCATGAAGTGTTGAATTTTAGAATAAAAGCACATCATGTGCAACAATGTTTATAGTTTGCTTTTTGCCTTTTGAGGAATCC
TTACAGAGCTGTAGTATTATTTTATAAGTGCTTATTAGTAAATACTTCAACCTTGTATATGAAGTTTGATTAGAAAATATGCATAAATGCACAACAGTCATTAGCC