sp|F4HRI2|HEI10_ARATH ----> E3 ubiquitin-protein ligase CCNB1IP1 homolog
Intron 1 GCAAGTAGGC ... GTCTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 3 | 0 | 3 |
| A2 | 52.17 | 11 | 1 | 12 |
| A3 | 50 | 1 | 1 | 1 |
| A4 | 20 | 4 | 0 | 1 |
| A5 | 33.33 | 2 | 0 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 45.45 | 6 | 1 | 5 |
| A8 | 0 | 2 | 3 | 0 |
| A9 | 14.29 | 6 | 0 | 1 |
| A10 | 40 | 6 | 3 | 4 |
>TRINITY_DN41417_c0_g1_i4 from sample A10 / Example spliced isoformGTAGAAGAGGGCGGCAGTGGCGGCATCAAGAGAACCGACAAATGCTTTGCTTAGGCTTTTCACACTTCGCTGGCATCAGATTACAGAGAAGAAATATTGGAAGAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCG
CGGACAAGGATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGAGAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGCACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCC
AAATGATGAATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACATCATGAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGTCGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACA
CGGCGTATCAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAAGCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGTCCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTT
CTCCAGAGATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGATGAACCGACACACCGATCAAGACAAGATGCATCCGGTGGATCGGATATTACTCCTCTAACTCCAGGGCAACCCGGCGACTTCTGGCAACCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGT
TCAACAAACGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCCGCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGATACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACATCTT
AATTTGAGAGTGGGAAGGCTGTGCAGGATTCGATCAAGAGACTTGTTTAATGAAGAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCAATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTTAGTGGCTTCACTG
ACAGATCAATGTAAATGAAACATTTAATGGCAATGGCACTTACAGGCTGCTGAGATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTGAGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTTATATGCATCTGGT
C
>TRINITY_DN41417_c0_g1_i7 from sample A10 / Example unspliced isoform:GTAGAAGAGGGCGGCAGTGGCGGCATCAAGAGAACCGACAAATGCTTTGCTTAGGCTTTTCACACTTCGCTGGCATCAGATTACAGAGgcaagtaggctgaacgagatagtactctttaattaacttgcagagagcttagggtcccgttttttctttgcacaatgcagcctagtccgttatgctaagtttacactgttcc
aaattatgctctggaactgcctcggtctatgcagAAGAAATATTGGAAGAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCGCGGACAAGGATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGA
GAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGCACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCCAAATGATGAATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACATCAT
GAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGTCGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACACGGCGTATCAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAA
GCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGTCCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTTCTCCAGAGATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGAT
GAACCGACACACCGATCAAGACAAGATGCATCCGGTGGATCGGATATTACTCCTCTAACTCCAGGGCAACCCGGCGACTTCTGGCAACCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGTTCAACAAACGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCC
GCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGATACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACATCTTAATTTGAGAGTGGGAAGGCTGTGCAGGATTCGATCAAGAGACTTGTTTAATGAA
GAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCAATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTTAGTGGCTTCACTGACAGATCAATGTAAATGAAACATTTAATGGCAATGGCACTTACAGGCTGCTGAG
ATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTGAGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTTATATGCATCTGGTC
Intron 2 GTATCCCACG ... TAAATTTTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.82 | 5.6 | 0.5 | 0.5 |
| A2 | 0 | 0.8 | 0 | 0 |
| A3 | 15.45 | 1.8 | 0.3 | 0.5 |
| A4 | 12.08 | 3.8 | 0.3 | 0.9 |
| A5 | 0 | 3.5 | 0 | 0 |
| A6 | 3.32 | 3.8 | 0.3 | 0 |
| A7 | 2.26 | 7.9 | 0.3 | 0 |
| A8 | 36.36 | 3.6 | 3 | 1 |
| A9 | 12.3 | 5.9 | 0.5 | 0.5 |
| A10 | 9.49 | 3.6 | 0.3 | 0.5 |
>TRINITY_DN32561_c0_g1_i5 from sample A6 / Example spliced isoformGAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCGCGGACAAGGATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGAGAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGC
ACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCCAAATGATGAATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACATCATGAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGT
CGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACACGGCGTATCAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAAGCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGT
CCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTTCTCCAGAGATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGATGAACCGACACACCGATCAAGACAAGGGCAACCCGGCGACTTCTGGCAA
CCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGTTCAACAAACGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCCGCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGAT
ACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACGTAATTATTCCTTTCCTGAAGGATTCGATCAAGAGACTTGTTTAATGAAGAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCA
ATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTTAGTGGCTTCACTGACAGATCAATGTAAATGAAACATTTAATGGCAATGGCACTTACAGGCTGCTGAGATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTG
AGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTTATATGCATCTGATC
>TRINITY_DN32561_c0_g1_i8 from sample A6 / Example unspliced isoform:GAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCGCGGACAAGGATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGAGAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGC
ACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCCAAATGATGAATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACAgtatcccacgcatatggcatttttaatattaaattctatttaaattagtcgg
tctccctgttttatcatataattgtcttaatttaaattttagTCATGAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGTCGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACACGGCGTAT
CAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAAGCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGTCCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTTCTCCAGAG
ATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGATGAACCGACACACCGATCAAGACAAGATGCATCCGGTGGATCGGATATTACTCCTCTAACTCCAGGGCAACCCGGCGACTTCTGGCAACCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGTTCAACAAA
CGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCCGCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGATACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACGTAATTATTCCTT
TCCTGAAGGATTCGATCAAGAGACTTGTTTAATGAAGAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCAATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTTAGTGGCTTCACTGACAGATCAATGTAAATGA
AACATTTAATGGCAATGGCACTTACAGGCTGCTGAGATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTGAGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTTATATGCATCTGATC
Intron 3 GTAATTATTC ... GGCTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 4 | 5 | 5 |
| A2 | 75 | 1 | 3 | 3 |
| A3 | 33.33 | 8 | 1 | 7 |
| A4 | 66.67 | 1 | 2 | 2 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 47.37 | 5 | 7 | 2 |
| A7 | 41.94 | 9 | 7 | 6 |
| A8 | 29.17 | 17 | 10 | 4 |
| A9 | 36.59 | 13 | 5 | 10 |
| A10 | 51.35 | 9 | 11 | 8 |
>TRINITY_DN48048_c0_g1_i3 from sample A7 / Example spliced isoformGGGCGGCAGTGGCGGCATCAAGAGAACCGACAAATGCTTTGCTTAGGCTTTTCACACTTCGCTGGCATCAGATTACAGAGAAGAAATATTGGAAGAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCGCGGACAAG
GATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGAGAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGCACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCCAAATGATG
AATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACATCATGAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGTCGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACACGGCGTAT
CAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAAGCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGTCCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTTCTCCAGAG
ATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGATGAACCGACACACCGATCAAGACAAGATGCATCCGGTGGATCGGATATTACTCCTCTAACTCCAGGGCAACCCGGCGACTTCTGGCAACCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGTTCAACAAA
CGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCCGCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGATACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACGATTCGATCAAGA
GACTTGTTTAATGAAGAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCAATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTTAGTGGCTTCACTGACAGATCAATGTAAATGAAACATTTAATGGCAATGGCAC
TTACAGGCTGCTGAGATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTGAGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTTATATGCATCTGGTCATTAACAATTCAAAAA
>TRINITY_DN48048_c0_g1_i2 from sample A7 / Example unspliced isoform:GGGCGGCAGTGGCGGCATCAAGAGAACCGACAAATGCTTTGCTTAGGCTTTTCACACTTCGCTGGCATCAGATTACAGAGAAGAAATATTGGAAGAAACGGCAATTTATTTTGAATAATGAAAAAAGTGTCAAGAAACGACTATTTCTCGACGTCGGTGGAAAATTCATGTTCGTGAGTTCGAGCACTGTCGCGGACAAG
GATCGGTTGTTGTTCGCGTGCAATGAAGTGCAATGCATGCTGGCGAGAGCTTGAGGGACGAGCCATAGCAACGACTTGCGGCCACATTTTGTGCACTGAAGACGCCGGTAGAATCTTAAGCACCGATGCAACATGTCCGGTTTGCGACCAAATTTTGTCCAAAAGCCTCATGAAGGCAGTTGACCTAAATCCAAATGATG
AATGGATGAACATGGCCATGGCAGGCGTTCCTCCTCAAAACATCATGAAAAGTGCATACAAAGGAGTAGCATTTTGGATGGGACAAAAGGATGTCGAGATGCAAGCCACGGTGAACAAAGTTTTACAACAATACCGCCATAAGTGCGAACAAATACAAGCAAAATTTACAGAAAAGCTTGAGCAAGTTCACACGGCGTAT
CAGAAAGCCGTAAAAAGAATTCAAATGATGCAGCAAGAAGTCGAAAGCCTAACAAAGGACAAAGAAGAACTTCAAGAAAAATACGCTGAAAAGTCCAGGCAGAAAAGAAAGCTGGAAGAGATGTATGATGCTTTGCGAAATGACTACGAGCAAACAAAGCGTTCCGCTATACAGCCTAGCACTAACTGTTTTCTCCAGAG
ATCGACAGATCAGGACCTGTTCTCTAGTCCTAATAATTTGTTGGATGAACCGACACACCGATCAAGACAAGATGCATCCGGTGGATCGGATATTACTCCTCTAACTCCAGGGCAACCCGGCGACTTCTGGCAACCTCCTCGTCAGAGAAACAACAATAGCTCAATGAATGTTTTTGACATTGGAGGCAGCGTTCAACAAA
CGAAAACTGGTGGCGGCGGTGCGTCCGGTGTTGTTGGAAACAGGCCGCTGTCTACAACTTCGTTTGGAGCCTCAAAGCCTTCATTATTTACACCAGTTGGCAACAATCCTTCAACTGCTTTGAGGAATTTGATACTCTCTCCAATGAAGCGCCCTCCCACATCTCGACTTCGTCCACAAGGATTCACgtaattattcctt
tcctgaagatcttaatttgagagtgggaaggctgtgcagGATTCGATCAAGAGACTTGTTTAATGAAGAGAATGACCGGATGACTTAATTTCGGGAGGTGGATACGATTTGACAAGAGAGCTTTCAATTTCAGAGCTTTCTCTAATAACTGAATGTTGGTAGCAATAGGGATCAGTATGGTTTGGTTTAGGCATTAACTT
AGTGGCTTCACTGACAGATCAATGTAAATGAAACATTTAATGGCAATGGCACTTACAGGCTGCTGAGATCCTGTACAAAGTATATTTCAATTCTCAAATGTCTGAGAATTATCATCCGACAAGATTGTGTACTTCGTGAATAACTCTTGTTTCTTTACATTTTGAGAAAAAATCTGTGTTGTAACCCTCAAAGCTATTTT
ATATGCATCTGGTCATTAACAATTCAAAAA