sp|F4I366|NRPA2_ARATH ----> DNA-directed RNA polymerase I subunit 2
Intron 1 ATATCCTTTG ... CAGGGTTTAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.09 | 17 | 11 | 1 |
| A2 | 18.58 | 46 | 14 | 7 |
| A3 | 20 | 26 | 6 | 7 |
| A4 | 13.51 | 16 | 3 | 2 |
| A5 | 21.21 | 13 | 5 | 2 |
| A6 | 25 | 3 | 2 | 0 |
| A7 | 17.24 | 12 | 4 | 1 |
| A8 | 14.29 | 3 | 1 | 0 |
| A9 | 25 | 12 | 5 | 3 |
| A10 | 24.14 | 11 | 5 | 2 |
>TRINITY_DN111058_c0_g2_i1 from sample A2 / Example spliced isoformGTTAATTCATCGTTTAAGCGCCGGTGATGATGGCCACAACCAGATAAATCGATAGATTAAAGCATGGCCTTTGATAGATTGGAATATTAATTTTTATTTATTATCATATTGACCTACTTAAGAAACGATGTGGTGGACTGATGGAAGAAACTACAAAACCCTTCTTAAACCCCTGAAGACGTCACTGAGTAGAGACGCTG
AAGATGTGACTGAGTAGAGACGCTCTTGAAAATATTGTTTAGTGATTATAGGCGGTTTTCCCCTTTCCCTTTGTCAGCATGGCAGCCGCAACAGAACAGCCCGATTTCGAGACATTGCAGGAGCTCGCTGCACCCCACATCGATTCCTTCAACTACTTTGCATCAAGGGGTTTGGACTTGGCTGTTATGGGCATGACTTG
CGTGGAGATTGCACAGCCCGGATCCTCAACAAAACTGAGAATATGGCTAGAGCGGCCGAGTATATTGCCGCCAGACAAGGAAACAACAGAGACCATTCAGGATCAGCGTCTGCTTCCATACGAGTGTAGGCAGGCTGGTACTACATATAAAGGTAGATTTTATCTGGATGTTTGTTTCCAATTGAATGAAGGGGAGGTGA
TCAAGGATAATGTGTGTTTTGGGCGTCTTCCAATAATGGTAAAGTCAAATCTTTGTCATTTGAAAGATGCTGGGCCACACAAATTAGTAGGTTTGAAGGAGGAAGCAAGTGAAATGGGCGGGTACTTCATTTGTAATGGATACGAACGACTTATCCGATTATTGATCATGCCAAAACGGAATCATCCAATGAGTGTGCAG
AGAAGTACATATCGAAATAGAGGTCCAGGATATACTGACAAAGCTGTAGTCACAAGGTGTACACGGGTAGATCAAACTTCAGTGACAGTTCGACTTTACTACGTGCAACATGGAAGTGCAAATCTTGGGTTTACGATAAGAAGACGCGAGTACCTCATTCCTGTTGGCATAGTGATGAAGGCTCTCATTGACACTAGTGA
TCGTGAGATCTACTTGCAACTAACATCCATTTGCAATGAAAGTTATCATGGACAAAAGGGAGCTGTGGGCACACAGCTTGTGAGTCAAAGGACACAGATTATTCTTGATGAAGTTAGGAAATATGGCCTTTTCACTCGCCTTCAGTGCCTGAAGTTTATTGGTGAACGCTTTCAAACAGTCTTGGAAGGAATGGAAACAC
AAAGTCACTCTGTCGTGGGAGAGAAAGTAATCAAAGATTACATCTTGGTCCATTTGGACAGTTTGATTGACAAGTTCAATTTTCTAATCTTTATGTTGCAAAAGCTTTTTGCACTTGTTGATCAAACTGCAGCACCAGACAATCCAGATACATTACAGAATCATGAAGTTTTGTTACCTGGTCACTTGTTGACTATCTAT
CTAAAGGACAAACTCCAGGAATGGCTGCTAAAGGTTAGATCACAGCTACAAAGTGAGATAAAGGATAACAGTATTGAATTCGATCTTCACGATTTGAATAAGGTGAAGAAGGTAATGGAAAAGGTTCCTGCTGGGAATATTGGCAAGGTTATTGATAACATGATAAATACTGGAAATCTCAAAACTCAATCAGGCCTTGA
TCTACAACAGAGTTCTGGAATGAGTGTTATTGCGGAGAAGCTCAACTTTTTCCGTTATCTTTCACATTTCCGGTCTGTGCATAGAGGAGCATATTTTACAGAAATGCGGACTACTTTAGTTCGTAAGCTGCTTCCAGAGTAAGCCCTGCATTCTTCAGTTAACATGCATTGTATCAAGTGAAAGTTTTGGTGTACTTTTA
AATGTATGTGAAATGTTGGACTATCTTGGTATATCGATTTTATCTTTTGTGCTTTACCTTGCAGGTCATGGGGTTTTCTTTGCCCCGTGCACACACCAGATGGAACACCTTGTGGATTGCTACTCCATATGACAGCTCAATGTCGTTAAGTACCAGCCTGTTGTATAACCATGGATTTTCTTCATTTAAAAGTTTTTTCT
GTGTAATTGTGCTGAAGTGGTTGATTCATCTTTAGACTTCTGTTTTAT
>TRINITY_DN111058_c0_g2_i8 from sample A2 / Example unspliced isoform:GTTAATTCATCGTTTAAGCGCCGGTGATGATGGCCACAACCAGATAAATCGATAGATTAAAGCATGGCCTTTGATAGATTGGAATATTAATTTTTATTTATTATCATATTGACCTACTTAAGAAACGATGTGGTGGACTGATGGAAGAAACTACAAAACCCTTCTTAAACCCCTGAAGACGTCACTGAGTAGAGACGCTG
AAGATGTGACTGAGTAGAGACGCTCTTGAAAATATTGTTTAGTGATTATAGGCGGTTTTCCCCTTTCCCTTTGTCAGCATGGCAGCCGCAACAGAACAGCCCGATTTCGAGACATTGCAGGAGCTCGCTGCACCCCACATCGATTCCTTCAACTACTTTGCATCAAGGGGTTTGGACTTGGCTGTTATGGGCATGACTTG
CGTGGAGATTGCACAGCCCGGATCCTCAACAAAACTGAGAAatatcctttgatataacgataaacatacacatgcagttttatttatttgttattttgtcattgtttctcagcgcgttgttagcttgactccagggtttacTATGGCTAGAGCGGCCGAGTATATTGCCGCCAGACAAGGAAACAACAGAGACCATTCAG
GATCAGCGTCTGCTTCCATACGAGTGTAGGCAGGCTGGTACTACATATAAAGGTAGATTTTATCTGGATGTTTGTTTCCAATTGAATGAAGGGGAGGTGATCAAGGATAATGTGTGTTTTGGGCGTCTTCCAATAATGGTAAAGTCAAATCTTTGTCATTTGAAAGATGCTGGGCCACACAAATTAGTAGGTTTGAAGGA
GGAAGCAAGTGAAATGGGCGGGTACTTCATTTGTAATGGATACGAACGACTTATCCGATTATTGATCATGCCAAAACGGAATCATCCAATGAGTGTGCAGAGAAGTACATATCGAAATAGAGGTCCAGGATATACTGACAAAGCTGTAGTCACAAGGTGTACACGGGTAGATCAAACTTCAGTGACAGTTCGACTTTACT
ACGTGCAACATGGAAGTGCAAATCTTGGGTTTACGATAAGAAGACGCGAGTACCTCATTCCTGTTGGCATAGTGATGAAGGCTCTCATTGACACTAGTGATCGTGAGATCTACTTGCAACTAACATCCATTTGCAATGAAAGTTATCATGGACAAAAGGGAGCTGTGGGCACACAGCTTGTGAGTCAAAGGACACAGATT
ATTCTTGATGAAGTTAGGAAATATGGCCTTTTCACTCGCCTTCAGTGCCTGAAGTTTATTGGTGAACGCTTTCAAACAGTCTTGGAAGGAATGGAAACACAAAGTCACTCTGTCGTGGGAGAGAAAGTAATCAAAGATTACATCTTGGTCCATTTGGACAGTTTGATTGACAAGTTCAATTTTCTAAT
Intron 2 GTAAGCCCTG ... TACCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.78 | 39 | 15 | 1 |
| A2 | 37.5 | 15 | 9 | 6 |
| A3 | 26.32 | 28 | 10 | 3 |
| A4 | 37.5 | 30 | 18 | 8 |
| A5 | 16.67 | 15 | 3 | 0 |
| A6 | 18.18 | 9 | 2 | 0 |
| A7 | 15.38 | 11 | 2 | 0 |
| A8 | 0 | 7 | 0 | 0 |
| A9 | 30.77 | 9 | 4 | 0 |
| A10 | 16.67 | 5 | 1 | 0 |
>TRINITY_DN111058_c0_g2_i7 from sample A2 / Example spliced isoformAACTTATTGGCCCATTTGAGCAGCTTTATGTTGCAAAAGCTTTTTGCACTTGTTGATCAAACTGCAGCACCAGACAATCCAGATACATTACAGAATCATGAAGTTTTGTTACCTGGTCACTTGTTGACTATCTATCTAAAGGACAAACTCCAGGAATGGCTGCTAAAGGTTAGATCACAGCTACAAAGTGAGATAAAGGA
TAACAGTATTGAATTCGATCTTCACGATTTGAATAAGGTGAAGAAGGTAATGGAAAAGGTTCCTGCTGGGAATATTGGCAAGGTTATTGATAACATGATAAATACTGGAAATCTCAAAACTCAATCAGGCCTTGATCTACAACAGAGTTCTGGAATGAGTGTTATTGCGGAGAAGCTCAACTTTTTCCGTTATCTTTCAC
ATTTCCGGTCTGTGCATAGAGGAGCATATTTTACAGAAATGCGGACTACTTTAGTTCGTAAGCTGCTTCCAGAGTCATGGGGTTTTCTTTGCCCCGTGCACACACCAGATGGAACACCTTGTGGATTGCTACTCCATATGACAGCTCAATGTCGAATCACCTCAGACATTGATTCAGAGGGAAATGTTAAGGATTGCACT
CAAATACGGAAAGCAATCACAAATGTCCTGATTGATTTTGGAATGACTCCTGTGCTGCCAAGGTTGGAACATGCTGGCCCACCTGAAGTTTTAAGTGTTCTCTTGGATGGTCGGATAATTGGGCATATTACTTCCTTGAAGATTGCAGAAGCTGTTGAACATATGCGGAGTTTGAAGCTTGCTAAAGCATCGAAGATTCC
AGAGGATCTCGAGGTGGGATATATACCGTGCACATTTGCTGGCGCATATCCTGGACTGTATCTTTTTACGACACCCTCAAGATTTGTCAGACCGGTGAAAAACATTCAAAGCTGCAGCAAGGACCATGATAATGTAGAACTTATTGGCCCATTTGAGCAGGCATATATGGAAATAAAATGTCTCGATGGTGGAAATGGAG
GGAGAAGGAAATCTGCTGTTCCTGCAACCCATGAAGAAATACATCCCACTGCAATGCTGAGTGTTGTTGCTGGTCTAACCCCTTGGTCTGACCACAATCAAAGTCCACGTAACATGTATCAATGCCAGATGGCAAAACAAACCATGGGTTTCGCCTCTCAAGCTATACAATTCCGTAGTGACAACAAACTCTATCGTTTG
CAAACACCTCAATCTCCTATTGCACGTACTATTGGATACGAAAAGTATAAGATTGATGAATTCCCTACAGGGACAAATGCAATTGTTGCAGTGCTTGCTTATACAGGGTATGATATGGAAGATGCCATGATCTTAAATAAGTCTTCTGTGGAGCGTGGAATGTGTCATGGTCAGATCTATCAGACAGAGACTGTCGACTT
GTCGGAGGGCCGTGGAAGATACGACCGTGTGTTGAAACTTTTTGCAAGAAGCAATAAAGATACATCTGCTAATGGTCTGATTGATACTGATGGTCTTCCATATATTGGCCAGGTTCTTCAATCAGGGGATCCTTATTGCAGTGTAATCAATACTGTGACCACTCAGAGCAAACTTCACAAACTGAAGGGTTCCGAGACTG
CTGTTGTTGATTATGTAGCTGCAGTTGGAACAAAGTCTAAGGATCCTTTACAAAAGGTAAAAATACGGGTACGGCGCAGCCGAAATCCAATCATTGGCGATAAATTCAGTAGCCGACATGGTCAAAAGGGTGTTTGCTCACAGTTATGGCCTGATGTTGACATGCCATTTTCAGCTGTGACAGGAATGCGTCCAGATCTT
ATAATTAATCCACATGCATTTCCATCTAGAATGACTATTGGGATGCTTCTAGAGTCTATAGCTGCTAAGGGTGGTAGCCTCCAGGGAAAGTTTGTTGATGCAACTCCATTTGCAAGATTGGCAGGGAATCAAGACAATAAGTCAAAGCATACCTCAGACTCTAGTGTTGATGAATTTGGGCAAGTTTTATCTTCATATGG
TTTCAACTATCATGGCACAGAGGTTCTCTACAGTGGCACCCTTGGTACAGAGCTTACTTGTGAAATATTCATTGGTCCAGTTTACTATCAACGACTTCGTCACATGGTTTCAGATAAATTTCAGGTCCGTTCCTTGGGACCCATTAATCCAGTTACTAGGCAACCTGTGAAAGGGCGCAAAGTTGGTGGAGGTATCCGTT
TTGGAGAAATGGAGCGTGATTCAATTCTTGCGCACGGAGCAGCCTATTTGCTTCATGACAGACTTCACACCAGTTCTGATTATCACATTGCAGATGTTTGCTCTAAATGTGGGAGTTTATTGTCAACTTTGTCTGTCCCTCAGAAACAAAGAAGTGATGGACTGACCAGTTTACCCATGAGTGGAAACAATGCCAAGAAG
ATTGTCTGCTATGTGTGCAAGTCAAGCAAGTCTATTGAGACAGTAGCAATGCCTTATGTATTCAGGTACTTGGCAGCAGAGTTGGCAGCAATGAACATC
>TRINITY_DN111058_c0_g2_i1 from sample A2 / Example unspliced isoform:GTTAATTCATCGTTTAAGCGCCGGTGATGATGGCCACAACCAGATAAATCGATAGATTAAAGCATGGCCTTTGATAGATTGGAATATTAATTTTTATTTATTATCATATTGACCTACTTAAGAAACGATGTGGTGGACTGATGGAAGAAACTACAAAACCCTTCTTAAACCCCTGAAGACGTCACTGAGTAGAGACGCTG
AAGATGTGACTGAGTAGAGACGCTCTTGAAAATATTGTTTAGTGATTATAGGCGGTTTTCCCCTTTCCCTTTGTCAGCATGGCAGCCGCAACAGAACAGCCCGATTTCGAGACATTGCAGGAGCTCGCTGCACCCCACATCGATTCCTTCAACTACTTTGCATCAAGGGGTTTGGACTTGGCTGTTATGGGCATGACTTG
CGTGGAGATTGCACAGCCCGGATCCTCAACAAAACTGAGAATATGGCTAGAGCGGCCGAGTATATTGCCGCCAGACAAGGAAACAACAGAGACCATTCAGGATCAGCGTCTGCTTCCATACGAGTGTAGGCAGGCTGGTACTACATATAAAGGTAGATTTTATCTGGATGTTTGTTTCCAATTGAATGAAGGGGAGGTGA
TCAAGGATAATGTGTGTTTTGGGCGTCTTCCAATAATGGTAAAGTCAAATCTTTGTCATTTGAAAGATGCTGGGCCACACAAATTAGTAGGTTTGAAGGAGGAAGCAAGTGAAATGGGCGGGTACTTCATTTGTAATGGATACGAACGACTTATCCGATTATTGATCATGCCAAAACGGAATCATCCAATGAGTGTGCAG
AGAAGTACATATCGAAATAGAGGTCCAGGATATACTGACAAAGCTGTAGTCACAAGGTGTACACGGGTAGATCAAACTTCAGTGACAGTTCGACTTTACTACGTGCAACATGGAAGTGCAAATCTTGGGTTTACGATAAGAAGACGCGAGTACCTCATTCCTGTTGGCATAGTGATGAAGGCTCTCATTGACACTAGTGA
TCGTGAGATCTACTTGCAACTAACATCCATTTGCAATGAAAGTTATCATGGACAAAAGGGAGCTGTGGGCACACAGCTTGTGAGTCAAAGGACACAGATTATTCTTGATGAAGTTAGGAAATATGGCCTTTTCACTCGCCTTCAGTGCCTGAAGTTTATTGGTGAACGCTTTCAAACAGTCTTGGAAGGAATGGAAACAC
AAAGTCACTCTGTCGTGGGAGAGAAAGTAATCAAAGATTACATCTTGGTCCATTTGGACAGTTTGATTGACAAGTTCAATTTTCTAATCTTTATGTTGCAAAAGCTTTTTGCACTTGTTGATCAAACTGCAGCACCAGACAATCCAGATACATTACAGAATCATGAAGTTTTGTTACCTGGTCACTTGTTGACTATCTAT
CTAAAGGACAAACTCCAGGAATGGCTGCTAAAGGTTAGATCACAGCTACAAAGTGAGATAAAGGATAACAGTATTGAATTCGATCTTCACGATTTGAATAAGGTGAAGAAGGTAATGGAAAAGGTTCCTGCTGGGAATATTGGCAAGGTTATTGATAACATGATAAATACTGGAAATCTCAAAACTCAATCAGGCCTTGA
TCTACAACAGAGTTCTGGAATGAGTGTTATTGCGGAGAAGCTCAACTTTTTCCGTTATCTTTCACATTTCCGGTCTGTGCATAGAGGAGCATATTTTACAGAAATGCGGACTACTTTAGTTCGTAAGCTGCTTCCAGAgtaagccctgcattcttcagttaacatgcattgtatcaagtgaaagttttggtgtactttta
aatgtatgtgaaatgttggactatcttggtatatcgattttatcttttgtgctttaccttgcagGTCATGGGGTTTTCTTTGCCCCGTGCACACACCAGATGGAACACCTTGTGGATTGCTACTCCATATGACAGCTCAATGTCGTTAAGTACCAGCCTGTTGTATAACCATGGATTTTCTTCATTTAAAAGTTTTTTCT
GTGTAATTGTGCTGAAGTGGTTGATTCATCTTTAGACTTCTGTTTTAT