sp|Q9FJR0|RENT1_ARATH ----> Regulator of nonsense transcripts 1 homolog
Intron 1 GTAATTAATT ... TGCAAGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28 | 36 | 16 | 12 |
| A2 | 23.08 | 15 | 7 | 2 |
| A3 | 25.93 | 20 | 12 | 2 |
| A4 | 33.33 | 15 | 6 | 9 |
| A5 | 25 | 18 | 10 | 2 |
| A6 | 20 | 2 | 0 | 1 |
| A7 | 17.65 | 7 | 1 | 2 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 11.11 | 4 | 1 | 0 |
| A10 | 0 | 7 | 0 | 0 |
>TRINITY_DN129441_c0_g1_i5 from sample A1 / Example spliced isoformTGCTTTTTAAATCCAAAGGACTTATCTGATGCATGGTCTAATGTTCCTAGTGAAGTTGGTGATTCACAGGTCTCTTCTTTGCATGGTTTTAGCAACCTTGGAAATTCTAATGGGGCTGAAGCCATAATAGATGTTGATGGGGAGAATTCCTGTGCAAGTCATTATGGAGAGTTGAAATTTATACCTAAGTGTCATGGCGA
AGGCTACTAAATGGGCAGTAACCTATACAAGGCACAAGGCACAAAAGAGAAAAGGTTATCATGATGGCATGCTTGTACTAGAGTGTTGTAACTCAAATCAATGCAAGGTTTTGCTATATGATGATTGCGGAAAGCTTTTGGATCATAGGTTCTTGAGGAATTATGAGAAAATAGAATCTGGAGAAACATTAGAGTTTGAT
AATGCCCTTGTTGATGTTGGTGATGCCATAGACAAGGAATCGTGTTTTGCAGACAGGAATAAGAGTGATGAAGATGTGCAAGTAATTAAGAAGGGATATTTTCCAGAAAGAGTTTATAAGCAACCAGTGTTTACAAAAGTTAAGAGGGGAAAAGGGACGGAGAAAATGGGATCAGATGTCATTCAAAACAAATCCGATGT
TAAGGATGCAGGCGCAAAAGAATGGAATGTTGTATATACGAAACAGAAGACAAAAAAGGTGAAGAAGTACCTTGATGGTATTCTTAAGCTCGTGGCTCCTGGTATACAACAAAAACAGGTGATTTTGTTCAGTGAAGATGGAAATATTTTAGAGAAGAAGTATCTGAGTTCTTATGAAGAAGTTGAAACTGACTGCACAT
TTGAATTGGAGGAATATCTTGTTGAGGTGGGTGAGCCAAAAGTTTTTCAGAAAGATTCAGAGTCATGTATGGCAAATTCAAATGGATCAGCATTGGTCTTGGAAAGGCTAGTTTCAGTTCAAGAGGCAAGAAGCACACACACAGAATTTCCTGGAGTTAATGTTATGACATCACTTTCTAATGATGTTGGTTCGAAAGAT
GCAAAAGGCCTTGAGAGCAATGCTTTTCGGCAGAAATTATTTGGAAGAAAAGATGTTGGCTTAAACTGCAATAAAGTCATGGATGTTTCCCGAGTTCCTGTCAAAGAGCCACTTAGGAATGTAAACGAGATATTGACAGTTTTGAAAAAGCCAATGATTGGAGAGGGCGTGCTTCTTGATGCTCAAGTTGTGGATGCAAA
TCTGAAATCACCGTCATTAGGAGAATGTTATATTCCTGGTATCGAGAGGGAAACTAGTAAGTGTGGAGCGCACTATAAAACGACAGACAAAGAAAACCTTTTAAAATATGATGTGAACAATAAACGCAGTTCTTCAAAAGTCAGTGGAGGAAGTCCTGCAAAGAAATCTTCTTGTGGAGGTTCATCTTTGGAAGCTGTAA
AACCTCTCTCTGTTCCAAGTACAAGATCAGTGACACACTCTGCAAGGCACTTCCAAGCCCCAAAACTGGAGTTCAATGCTACCGTACAACAGCTTGTATTTCCTGAAAAGTTTGTCCC
>TRINITY_DN129441_c0_g1_i2 from sample A1 / Example unspliced isoform:GCCAATGTAATGTGCTCCAAAGGCATTCAACAATATTACCAATTGAAGCTATTTGAACTAAATATCCATCAACACTAAATTTCCCGCAGGCATCGCTTCTGTAATACCAGAGTTGAAATTTATACCTAAGTGTCATGGCGAAGGCTACTAAATGGGCAGTAACCTATACAAGGCACAAGGCACAAAAGAGAAAAGGTTAT
CATGATGGCATGCTTGTACTAGAGTGTTGTAACTCAAATCAATGCAAGGTTTTGCTATATGATGATTGCGGAAAGCTTTTGGATCATAGGTTCTTGAGGAATTATGAGAAAATAGAATCTGGAGAAACATTAGAGTTTGATAATGCCCTTGTTGATGTTGGTGATGCCATAGACAAGGAATCGTGTTTTGCAGACAGGAA
TAAGAGTGATGAAGATGTGCAAGTAATTAAGAAGGGATATTTTCCAGAAAGAGTTTATAAGCAACCAGTGTTTACAAAAGTTAAGAGGGGAAAAGGGACGGAGAAAATGGGATCAGATGTCATTCAAAACAAATCCGATGTTAAGGATGCAGGCGCAAAAGAATGGAATGTTGTATATACGAAACAGAAGACAAAAAAGG
TGAAGAAGTACCTTGATGGTATTCTTAAGCTCGTGGCTCCTGGTATACAACAAAAACAGGTGATTTTGTTCAGTGAAGATGGAAATATTTTAGAGAAGAAGTATCTGAGTTCTTATGAAGAAGTTGAAACTGACTGCACATTTGAATTGGAGGAATATCTTGTTGAGGTGGGTGAGCCAAAAGTTTTTCAGAAAGATTCA
GAGTCATGTATGGCAAATTCAAATGGATCAGCATTGGTCTTGGAAAGGCTAGTTTCAGTTCAAGAGGCAAGAAGCACACACACAGAATTTCCTGGAGTTAATGTTATGACATCACTTTCTAATGATGTTGGTTCGAAAGATGCAAAAGGCCTTGAGAGCAATGCTTTTCGGCAGAAATTATTTGGAAGAAAAGATGTTGG
CTTAAACTGCAATAAAGTCATGGATGTTTCCCGAGTTCCTGTCAAAGAGCCACTTAGGAATGTAAACGAGATATTGACAGTTTTGAAAAAGCCAATGATTGGAGAGGGCGTGCTTCTTGATGCTCAAGTTGTGGATGCAAATCTGAAATCACCGTCATTAGGAGAATGTTATATTCCTGGTATCGAGAGGGAAACTAGTA
AGTGTGGAGCGCACTATAAAACGACAGACAAAGAAAACCTTTTAAAATATGATGTGAACAATAAACGCAGTTCTTCAAAAGTCAGTGGAGGAAGTCCTGCAAAGAAATCTTCTTGTGGAGgtaattaatttttgctgcagtttgaagattctatggtatttctatctaatgaggttattaacttgaaggaaactggtttt
acatgcaaggaagGTTCATCTTTGGAAGCTGTAAAACCTCTCTCTGTTCCAAGTACAAGATCAGTGACACACTCTGCAAGGCACTTCCAAGCCCCAAAACTGGAGTTCAATGCTACCGTACAACAGCTTGTATTTCCTGAAAAGTTTGTCTCACAAAAGTGTCGGCAAGTGTTTATCCCAAATGAGTTTCCATCTTTCGC
TTCCTATCGGCACATAATGTCTTCCGCAGTTTACGAAGAAATAAAACTCATAGTAAGTAGTCTATACCTAATGCTTCATTTTTTGGTTCATTTTAA
Intron 2 GTGAGATTCC ... TTGATTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 15 | 0 | 0 |
| A2 | 14.29 | 12 | 2 | 0 |
| A3 | 33.33 | 8 | 4 | 2 |
| A4 | 15.79 | 16 | 3 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 0 | 2 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 0 | 2 | 0 | 0 |
| A10 | 0 | 1 | 0 | 0 |
>TRINITY_DN121458_c0_g1_i1 from sample A3 / Example spliced isoformCAGATTTCCCGCCAATGTAATGTGCTCCAAAGGCATTCAACAATATTACCAATTGAAGCTATTTGAACTAAATATCCATCAACACTAAATTTCCCGCAGGCATCGGTTCTGTAATACCAGAGTTGAAATTTATACCTAAGTGTCATGGCGAAGGCTACTAAATGGGCAGTAACCTATACAAGGCACAAGGCACAAAAGAG
AAAAGGTTATCATGATGGCATGCTTGTACTAGAGTGTTGTAACTCAAATCAATGCAAGGTTTTGCTATATGATGATTGCGGAAAGCTTTTGGATCATAGGTTCTTGAGGAATTATGAGAAAATAGAATCTGGAGAAACATTAGAGTTTGATAATGCCCTTGTTGATGTTGGTGATGCCATAGACAAGGAATCTGCAGACA
GGAATAAGAGTGATGAAGATGTGCAAGTAATTAAGAAGGGATATTTTCCAGAAAGAGTTTATAAGCAACCAGTGTTTACAAAAGTTAAGAGGGGAAAAGGGACGGAGAAAATGGGATCAGATGTCATTCAAAACAAATCCGATGTTAAGGATGCAGGCGCAAAAGAATGGAATGTTGTATATACGAAACAGAAGACAAAA
AAGGTGAAGAAGTACCTTGATGGTATTCTTAAGCTCGTGGCTCCTGGTATACAACAAAAACAGGTGATTTTGTTCAGTGAAGATGGAAATATTTTAGAGAAGAAGTATCTGAGTTCTTATGAAGAAGTTGAAACTGACTGCACATTTGAATTGGAGGAATATCTTGTTGAGGTGGGTGAGCCAAAAGTTTTGCAGAAAGA
TTCAGAGTCATGTATGGCAAATTCAAATGGATCAGCATTGGTCTTGGAAAGGCTAGTTTCAGTTCAAGAGGCAAGAAGCACACACACAGAATTTCCTGGAGTTAATTTTATGACATCACTTTCTAATGATGTTGGTTCGAAAGGTGCAAAAGGCCTTGAGAGCAATGCTTTTCGGCAGAAATTATTTGGAAGAAAAGATG
TTGGCTTAAACTGCAATAAAGTCATGGATGTTTCCCGAGTTCCTGTCAAAGAGCCACTTAGGAATGTAAACGAGATATTGACAGTTTTGAAAAAGCCAATGATTGGAGAGGGCGTGCTTCTTGATGCTCAAGTTGTGGATGCAAATCTGAAATCACCGTCATTAGGAGAATGTTATATTCCTGGTATCGAGAGTGAAACT
AGTAAGTGTGGAGCGCACTATAAAACGACAGACAAAGAAAACCTTTTAAAATATGATGTGAACAATAAACGCAGTTCTTCAAAAGTCAGTGGAGGAAGTCCTGCAAAGAAATCTTCTTGTGGAGGTTCATCTTTGGAAGCTGTAAAACCTCTCTCTGTTCCAAGTACAAGATCAGTGACACACTCTGCAAGGCACTTCCA
AGCCCCAAAACTGGAGTTCAATGCTACCGTACAACAGCTTGTATTTCCTGAAAAGTTTGTCTCACAAAAGTGTCGGCAAGTGTTTATCCCAAATGAGTTTCCATCTTTCGCTTCCTATAGGCACATAATGTCTTCCGCAGTTTACGAAGAAATAAAACTCATATTATTTGATATTGGAAATGAGTTCCACAAAGCAAGAC
AACAAATTTCACGGCTCAATAAAGGGCGACCATTATGTAAGCATGGGATGGCAAGGGTACAAATTGTCAAAAAGGATGGACCTAACAAAGGGCGATTATTCTATGGATGCCCATCTCAAGTAGAGTCTTGTTTGTTTGCTTGGGTTGATAGAGGTCAAAAACAGACAGATAGTTTTGAAAGAGATTTTGATTTATCAAGT
GAGGAGATGGAGCATGCATTTAGTTGCTTCAACATAGACTTCTATGCGGATTGTGAAATATTTACTAGGAAGATTGGAAATTTCTTTTCAAAGAAGAGAAGGCGGGACGAATATGAGTGCGGGGAAGAGATTGCCAGATTGGACAAAACTTCCACATACTTGAAATTGTGTAACTCAAGAAATTACAAAAGATGTAGTCA
CTCAAAGGGTGATCTTTGGATTATAAGTTCGAACGCCAATTTTAGCAAAGAGACAAGGGATGATTTCGTTTCTATTGGTGTGAGTGATTATCATGGGCCTTCATCAGATGGTGTTCTAGAGGTTGTTTTTCTTGAAGGAAAACCACACAATATGCCATTTAGAAAAGCTTATGCACTACATGGTCCATGCATCCAATGTG
AGCTTGCAATGCTTAACATACTAAGGGAAATGCAACCTCAAAGCATGCCATTGCTGCCACTCCTCCTTCAATGCCCTAAAAGTGCAACAGAAAACAACCCCACCATAGAGGCTGAGAAAATGGCAGATCAATTTATCATAAAGTACAATCTAAATGAAGATCAGGCAAAAGTTGTCCACCTTGTGGCAAAATGGTTCACA
AATTTTAACAGTTCAAATTTGGGATTGCTGTCATCGAAGCCAGAAATATGTCTTGTGCATGGAATTTTTGGGTCTGGAAAAAGTTACCTTCTGACTGTTATCATCATCTTTCTCGCTAGTACTTTCAAGGATGGGCAAGCAATGCGAATTTTGATATCTGCTGCAACCAATGTTGCAATTGACAGGGTTCTATCAGGTTT
ATTGGAGCTTGGTTTTAATGACTTTATCAGAGTGGGCAGCATCAAGAAAATTGCGAGAAATATTTTGCCTTACTCTCTCTGCACTGCATCAGATGTAAATAGTGTAGAAGATGCAACCCTGAAAGAAATGCAGGAGCGAATGAAGGAAGCATCTGTTGACGAGAGATTGGAAATTGAAGAGGAGTTAAAATCTTTAAAAG
AAGGGAAGATAGCCAAACGGAAGGAGAAACTCAAAGATGTACAAGTGGTTGGTGTCACCTGTTATTCAACGACCAATCCAATCTTGAAGGGAAACAAGTTCCAGATTTGTATTCTTGATGAGTGCTCACAAATACCAGAACCACTAAGCTTGCTTCCACTTTCTCAGTTTGGCTGCATGAAGCTTATTGCAGTTGGAGAT
CCTTCTCAGTTACCACCAGCTTTACTCGGGGGATCAGATCTTTGTGAAGGGACAGATGCTGAAATGGCAGGCGATCATAGAAAATACAGCAAGAATTGCTCATTTCAAGAAGGTGAAAATGAAACTAAAGGATCTCCTTCCTTTCATGATCTCAGAAGGGCTCTATTTGTTCGATTGGTGGAAATGGGATATAAGCCAAT
AATGCTACGAACACAATATAGATGTCATCCAAGGTTAATAACTATACCAAATGAGTTATTCTATGGAGGAAGGATCATCAGTGGGTGCAGGGAGATTGACCGGCCTCCTCTTTTGTCGGGAATGCCACCTCTGTTGTTTTGGGATACATGCGCCCATGGCAGTGAGGTAAAGGACTCTTTAAAGAGTTACAGCAACCTAT
ATGAAGCAGAAATAGCTTGTGAATTGATCAAAATGATGCTAGAGTATGGTATTCCTGGATACCAAATTGGTGTAATTGTTCTCTACAAATCACAGGCAAACCTTGTGCAGGAGCTTCTTTCTCAAGGCTGCAGTTTTAAAAGAAACAAAAGAAATACATTAAAAGTTAAACCTACCAAAGACTTGGTGTGCCAGGAACCA
AAAACATATGTTTCAACAAAATGTGAAGATGCTAGTTTTACGAAACATGGATATTTAGGTGTGGAAGTACAGATATCAACAGTTGATGCATTTCAGGGAATGGAAAAAAATATTATTATATTGTCTTGTTGTCGAACCAATGGCTTAGGTTTTCTGTCTTCACCTAACCGTCTAAATGTAGCTCTTACAAGAGCTCGACA
CCATTTAATCGTTATTGGTAAGGCATCAAATTTGAAAGGTAGCCCTTTCTGGAGAAAGCTGTTGTCCAATGCTGCAAGTACATCAGGATCATATATTTCAACACCAGAATCAGGTTCAGAGATCATTATAAGCATCATGCGAGAGCATATCGCTAGAGAGAATCCTAACCACACAGAATGTATTCATCTTCTAAAACCCA
GTGAAGAAGGTGTTGATGCTAATAAAGGTTCAGATGTGGGCATTGTTGATGCACAGCAAACCCTTACCGACAAGGAACAGAGCACTATCTATCACTTAGATCAAAGCCGGCCATTGGAAGGATCACATGCTTTGCACATTGTAGATATACCAGGAGTTGATGCTGGGAGCACTCACTGCTTGCATGATGAAGATAATAAG
GAAAGCACAGGGATCAGAATGACTGAGCTTGTTGACAGAAGTGCATGTATACAAAACAGGTGCAATTATGATTTGAAAAGAATTAATGTTGGAGGATCTCAAACAGAGCATGAAGTTTGGAGTGGAGATGCTTTAGAATGTACTGATATCAACGAGGATGTGGTTCTTTTGAAAGAGGATCAGGAGAGCCTCTCCAAGAA
GGTTGATCTTTCAAAAGATGGTGGTGATTTTGAACCTGGAGAAGCCAGCGATTATGTCTTTGATTGACAATCTAGTTCATTGGTCGATACTGATTTGTTCTCTCCAAGTGACCCATCAACAAGCTTGCTACAGAATGGATCAATACCTGAATTTGACTTAGTGGATGCTGAAACATTTAGCACAAGGAAACAGCTAGAGG
TGAAGCAGACTGACAGAGATAACCCCAACAATTGCATTGCTGATGTGCTGCTTAAAGCCACTACTGTCACTGCATCTGAAGATGGTAGAAATGCTTTTAGCGGACTATGGGAAGCCAAAGATACTGTAATCACTGATGTTGAAAAAGATGAACTTGCTCCAACATTCGATTTAGGCTTTTGAGTTTTGACATATTAGGAA
ATTCCCGGCAATACCAGGTATTGAAAGATTTAATGGATATAATGCATTGATGTAATAAGGAAGATGGCTTATAGGAAATTTGAATTCCATAATGCATATCATCCTTCTGTATATGGCATAAAATTAAATCTGATAAATTGCTCTATCAATCCTCTAGCAATACGAGTACTCTCTATGGGAG
>TRINITY_DN121458_c0_g1_i14 from sample A3 / Example unspliced isoform:CTTGCAGTGTTTGATGAGATTTCTTGCTAATTTCCATGATGCATTTAGGATGGACCTAACAAAGGGCGATTATTCTATGGATGCCCATCTCAAGTAGAGTCTTGTTTGTTTGCTTGGGTTGATAGAGGTCAAAAACAGACAGgtgagattccagatcaactcaattttgaattaaccagcttcatattagatattttagt
aggtaaacataaatttcatgtcagtaaacttttgtgatgcaagactccacattctttcacaactgtgtgttcgttgattatagATAGTTTTGAA