sp|B6EUB3|PDS5A_ARATH ----> Sister chromatid cohesion protein PDS5 homolog A
Intron 1 GTATTAGCCA ... ATTGTGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.96 | 17 | 4 | 4 |
| A2 | 21.89 | 22 | 4.3 | 8 |
| A3 | 40.84 | 14 | 10.3 | 9 |
| A4 | 24.14 | 11 | 1 | 6 |
| A5 | 3.03 | 10 | 0.7 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 10.16 | 28 | 0.3 | 6 |
| A8 | 23.77 | 25 | 4.7 | 11 |
| A9 | 16.98 | 17 | 3 | 4 |
| A10 | 7.68 | 20 | 1.3 | 2 |
>TRINITY_DN115852_c0_g1_i15 from sample A1 / Example spliced isoformGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTC
GCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCA
AAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATT
GGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAG
CATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGC
AGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGG
TCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGG
GAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAG
TTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTT
AGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAG
TACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAAC
AACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGA
AATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGA
TGAGGACATCAGTCAAAAGTGCTACATCTAATGGGTACTTATCAGATATGTTTCCATTAAAATGAAAGGAAGTTACTGGGGTATTGGTTTCTAAGTAGGATTGTTTTCTTATGTTTTGTTGGAAACATTGGTTTAAGCATTTGGAAGTGTTATTACCAG
>TRINITY_DN115852_c0_g1_i14 from sample A1 / Example unspliced isoform:GAAAATGGTTGAGGTACTTATTGCTGCTAATGAGATGCTTACATCTTTCCTGTTATTTTATGCAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAgtattagccaacaacttctgcggcattaaactttctactatgaaataaggttgttttattatgtttggcatgtctgatctaaa
tttcattgtgttagGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAAAGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTCCGAAATGTGAATTCCAATGCT
CATGGTTTATTGAAACAAAGATCCAATGCTTGCTTATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACTGCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCATCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGGAGGGTTTT
GCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATAGATGTGCTTACAAAAGGCGGGGTGGACTAGCTGTGGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAATTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGGATTTAATG
AATGCATAAGTGAAGTGAGCTAACTGTTTCAACATCCAAGCTTATATGTAGATCAGTGATGATCTCTTTTTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCAATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTAGCCTGTAA
TGGAGGGA
Intron 2 GTAAGTATTT ... ATGGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.2 | 21 | 6 | 6 |
| A2 | 29.38 | 9 | 7 | 0.5 |
| A3 | 32.56 | 16 | 10 | 5.5 |
| A4 | 45.91 | 5 | 5 | 3.5 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 1 | 1 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 0 | 3 | 0 | 0 |
| A10 | 7.14 | 3 | 0 | 0.5 |
>TRINITY_DN115852_c0_g1_i15 from sample A1 / Example spliced isoformGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTC
GCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCA
AAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATT
GGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAG
CATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGC
AGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGG
TCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGG
GAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAG
TTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTT
AGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAG
TACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAAC
AACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGA
AATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGA
TGAGGACATCAGTCAAAAGTGCTACATCTAATGGGTACTTATCAGATATGTTTCCATTAAAATGAAAGGAAGTTACTGGGGTATTGGTTTCTAAGTAGGATTGTTTTCTTATGTTTTGTTGGAAACATTGGTTTAAGCATTTGGAAGTGTTATTACCAG
>TRINITY_DN115852_c0_g1_i7 from sample A1 / Example unspliced isoform:GAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTC
GCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGgtaagtatttctgaatgtgcttaatgttttcttgttcaggattttggtttccatagggctaccagttatggattccttattcttttcaaatggttttagTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGGTAAAAATGATGTTAACAAATAACATTTTTCAAAGAGGAGC
AATAATAAATCAAATGAAAATTCGAAGTAAAGCATATATAGAAGCCCAAAAACTCCAGAAATTGTCATAGAACAGCTAGATTGTGGTTTGGATGCATCTAATAAATCACTGGTTTTTGGCATAATTGAAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAA
AAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGC
GAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGA
ATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAGCATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGT
CAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGCAGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATA
ATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGGTCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCA
GAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGGGAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGAT
GCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAGTTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTA
AGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTTAGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTT
GGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAGTACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGT
GTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAACAACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTC
CAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGAAATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGAC
ATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAAAGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTCCGAAATGTGAATTCCAATGCTCATGGTTTATTGAAACAAAGATCCAATGCTTGCTT
ATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACTGCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCATCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGGAGGGTTTTGCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATA
GATGTGCTTACAAAAGGCGGGGTGGACTAGCTGTGGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAATTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGGATTTAATGAATGCATAAGTGAAGTGAGCTAACTGTTTCAACAT
CCAAGCTTATATGTAGATCAGTGATGATCTCTTTTTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCAATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTAGCCTGTAATGGAGGGA
Intron 3 GTAAGGGACT ... AAAACAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.35 | 21 | 23 | 27 |
| A2 | 45.45 | 15 | 6 | 19 |
| A3 | 61.04 | 15 | 13 | 34 |
| A4 | 64.1 | 7 | 4 | 21 |
| A5 | 46.67 | 8 | 4 | 10 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 50 | 4 | 0 | 8 |
| A8 | 53.85 | 3 | 0 | 7 |
| A9 | 54.29 | 8 | 4 | 15 |
| A10 | 69.23 | 2 | 4 | 5 |
>TRINITY_DN39757_c0_g2_i1 from sample A9 / Example spliced isoformGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACT
TTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGTTGACTCCGGATCAGAAGTTGTGCAAG
AGCAGTGCATATGAGAATGCTCCAATCAGAGAAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGA
GAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATA
ATGTTATGATGACTGTTGCAGAAGCATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAAAAGCAGGATAAAGGATGTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATT
GCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGCAGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATCCCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTT
TCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGGTCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAA
GACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGGGAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAA
TTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAGTTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACC
AGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTTAGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTC
AACCATTAGAAGAAGATAATGTTTCTGGACAAAAAGTACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAATTGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCA
GAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAACAACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGG
ACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGAAATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGG
AACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAAAGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTTCGAAATGTGAATTCCAATGCTCATGGTTTATTGAAACAAAGATCCAATGCTTGCTTATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACT
GCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCATCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGGAGGGTTTTGCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATAGATGTGCTTACAAAAGGCGGGGTGGACTAGCTGT
GGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAATTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGGATTTAATGAATGCATAAGTGAAGTGAGCTAACTGTTTCAACATCCAAGCTTATATGTAGATCAGTGATGATCTCTTT
TTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCAATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTAGCCTGTAATGGAGGGATTAATTTGATCTTTTGCAGTTACCGTTCCTTGATGCCAATGTAGTATAAGCTGATGTTAAT
TCTAATATTTATTTATTGTCTTTATTTCTTAACGGC
>TRINITY_DN39757_c0_g2_i3 from sample A9 / Example unspliced isoform:GTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACT
TTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGTTGACTCCGGATCAGAAGTTGTGCAAG
AGCAGTGCATATGAGAATGCTCCAATCAGAGAAGgtaagggactggatgctgagagtttggagtctggaaatcctttagagcattttgaagaacaattcaaaagaacaatattagaagtggtgcctagtgaagtcaagtctgctgaggataatgttatgaataattttgcaaaaacagcagTTCTTTCCAAAAGGAAACG
AGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAGAATCCTGATG
AAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAGCATCGGTCCTTCCCAAAACGAAACAAGGT
GGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAAAAGCAGGATAAAGGATGTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGCAGACCATACAAGGATGG
TCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATCCCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGGTCCCAAAGATCATGAAA
GTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGGGAAATAGGCAAAGCTTA
TCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAGTTGGATATGGAAGCAAC
ATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTTAGAGAAGTCTGAAGGCT
TAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAGTACCAAAGAGTTCCAAT
AATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAATTGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAACAACCCCAAAGGGACTCC
AAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGAAATTGGAGAGGAGTTGG
TTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAA
AGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTTCGAAATGTGAATTCCAATGCTCATGGTTTATTGAAACAAAGATCCAATGCTTGCTTATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACTGCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCA
TCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGGAGGGTTTTGCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATAGATGTGCTTACAAAAGGCGGGGTGGACTAGCTGTGGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAA
TTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGGATTTAATGAATGCATAAGTGAAGTGAGCTAACTGTTTCAACATCCAAGCTTATATGTAGATCAGTGATGATCTCTTTTTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCA
ATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTAGCCTGTAATGGAGGGATTAATTTGATCTTTTGCAGTTACCGTTCCTTGATGCCAATGTAGTATAAGCTGATGTTAATTCTAATATTTATTTATTGTCTTTATTTCTTAACGGC
Intron 4 GTATGCCCTT ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.66 | 9.7 | 1 | 3 |
| A2 | 18.52 | 3 | 0 | 1 |
| A3 | 30.36 | 15 | 6 | 7 |
| A4 | 34.01 | 14 | 5 | 9 |
| A5 | 24.44 | 1.7 | 0 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 13.23 | 3.3 | 0 | 1 |
| A8 | 33.33 | 1 | 0 | 1 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 20.64 | 2.3 | 0 | 1 |
>TRINITY_DN112378_c3_g1_i5 from sample A3 / Example spliced isoformGACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTCGCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAA
ATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTAC
TGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGGTAAGTATTTCTGAATGTGCTTAATGTTTTCTTGTTCAGGATTTTGGTTTCCATAGGGCTACCAGTTATGGATTCCTTATTCTTTTCAA
ATGGTTTTAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATA
ATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGAT
TTAAAATTGGCATCTGGAACTCAGGAG
>TRINITY_DN112378_c3_g1_i16 from sample A3 / Example unspliced isoform:GACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTCGCAGAAGCATTTGAGCCATTTTATCGgtatgcccttagtatttttctcatctattattctaacggatataaatatcttagggttattttta
cagtagcagcgtttgactgattcactgaatatacatgacttttttgctataaatatcaaataaaattgttttgcagGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAA
ATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGG
GGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAG
Intron 5 GTTCTCCAGA ... TTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 2 | 8 | 2 |
| A2 | 52 | 6 | 11 | 2 |
| A3 | 50 | 18 | 22 | 14 |
| A4 | 56.76 | 8 | 8 | 13 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 60 | 1 | 2 | 1 |
| A8 | 50 | 1 | 1 | 1 |
| A9 | 55.56 | 2 | 3 | 2 |
| A10 | 100 | 0 | 0 | 1 |
>TRINITY_DN112378_c3_g1_i11 from sample A3 / Example spliced isoformGACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAA
AGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGGTAAGTATTTCTGAATGTGCT
TAATGTTTTCTTGTTCAGGATTTTGGTTTCCATAGGGCTACCAGTTATGGATTCCTTATTCTTTTCAAATGGTTTTAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACA
ATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAAC
CACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAG
>TRINITY_DN112378_c3_g1_i16 from sample A3 / Example unspliced isoform:GACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGgttctccagaaattgttcttagttatttgatacactccctggcacaccatcctgattttcctgtttctaataaaagtttattcgcagaagcatttgagccattttatcggtatgcccttagtatttttctcatctattattctaacggatataaatatcttagggttattttta
cagtagcagcgtttgactgattcactgaatatacatgacttttttgctataaatatcaaataaaattgttttgcaggcagttgcatttttttctttcagAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAA
ATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGG
GGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAG
Intron 6 GTAAAAATGA ... ATAATTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.35 | 25 | 6 | 6 |
| A2 | 29.41 | 6 | 2 | 3 |
| A3 | 27.78 | 13 | 1 | 9 |
| A4 | 53.85 | 3 | 2 | 5 |
| A5 | 55.56 | 4 | 1 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | 100 | 0 | 1 | 3 |
| A9 | 7.69 | 6 | 0 | 1 |
| A10 | 20 | 4 | 0 | 2 |
>TRINITY_DN115852_c0_g1_i15 from sample A1 / Example spliced isoformGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTC
GCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCA
AAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATT
GGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAG
CATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGC
AGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGG
TCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGG
GAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAG
TTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTT
AGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAG
TACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAAC
AACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGA
AATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGA
TGAGGACATCAGTCAAAAGTGCTACATCTAATGGGTACTTATCAGATATGTTTCCATTAAAATGAAAGGAAGTTACTGGGGTATTGGTTTCTAAGTAGGATTGTTTTCTTATGTTTTGTTGGAAACATTGGTTTAAGCATTTGGAAGTGTTATTACCAG
>TRINITY_DN115852_c0_g1_i7 from sample A1 / Example unspliced isoform:GAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGGTTCTCCAGAAATTGTTCTTAGTTATTTGATACACTCCCTGGCACACCATCCTGATTTTCCTGTTTCTAATAAAAGTTTATTC
GCAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGGTAAGTATTTCTGAATGTGCTTAATGTTTTCTTGTTCAGGATTTTGGTTTCCATAGGGCTACCAGTTATGGATTCCTTATTCTTTTCAAATGGTTTTAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGgtaaaaatgatgttaacaaataacatttttcaaagaggagc
aataataaatcaaatgaaaattcgaagtaaagcatatatagaagcccaaaaactccagaaattgtcatagaacagctagattgtggtttggatgcatctaataaatcactggtttttggcataattgaagAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAA
AAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGC
GAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGA
ATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAGCATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGT
CAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGCAGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATA
ATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGGTCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCA
GAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGGGAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGAT
GCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAGTTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTA
AGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTTAGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTT
GGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAGTACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGT
GTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAACAACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTC
CAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGAAATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGAC
ATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAAAGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTCCGAAATGTGAATTCCAATGCTCATGGTTTATTGAAACAAAGATCCAATGCTTGCTT
ATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACTGCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCATCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGGAGGGTTTTGCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATA
GATGTGCTTACAAAAGGCGGGGTGGACTAGCTGTGGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAATTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGGATTTAATGAATGCATAAGTGAAGTGAGCTAACTGTTTCAACAT
CCAAGCTTATATGTAGATCAGTGATGATCTCTTTTTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCAATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTAGCCTGTAATGGAGGGA
Intron 7 GTTCTCCAGA ... TTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.82 | 2 | 8 | 10 |
| A2 | 57.14 | 6 | 11 | 5 |
| A3 | 53.25 | 18 | 22 | 19 |
| A4 | 62.79 | 8 | 8 | 19 |
| A5 | 100 | 0 | 1 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 71.43 | 1 | 2 | 3 |
| A8 | 50 | 1 | 1 | 1 |
| A9 | 55.56 | 2 | 3 | 2 |
| A10 | 100 | 0 | 0 | 3 |
>TRINITY_DN112378_c3_g1_i11 from sample A3 / Example spliced isoformGACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAA
AGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGGTAAGTATTTCTGAATGTGCT
TAATGTTTTCTTGTTCAGGATTTTGGTTTCCATAGGGCTACCAGTTATGGATTCCTTATTCTTTTCAAATGGTTTTAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACA
ATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAAC
CACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAG
>TRINITY_DN112378_c3_g1_i5 from sample A3 / Example unspliced isoform:GACATTTGTCCTCATGTGAGGAAACAATTTCTTGCTAAGGTTCATAGGTACCTGAAGGATAGGAATCTTCACAGTAAATATGCATGTGCTTTTGTACTTAGCACAGCTGGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTT
GCAATTAGATTGCAACTCATCTACAGgttctccagaaattgttcttagttatttgatacactccctggcacaccatcctgattttcctgtttctaataaaagtttattcgcagaagcatttgagccattttatcggcagttgcatttttttctttcagAAATACTGCATGAAGATCCAAGTAAAACCCAAGATTCAGAAA
ATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTAC
TGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGGTAAGTATTTCTGAATGTGCTTAATGTTTTCTTGTTCAGGATTTTGGTTTCCATAGGGCTACCAGTTATGGATTCCTTATTCTTTTCAA
ATGGTTTTAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATA
ATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGAT
TTAAAATTGGCATCTGGAACTCAGGAG
Intron 8 GTTCTCCAGA ... TTATTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.52 | 5 | 8 | 11 |
| A2 | 100 | 0 | 11 | 7 |
| A3 | 61.7 | 9 | 15 | 14 |
| A4 | 66.67 | 4 | 6 | 10 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 50 | 3 | 2 | 4 |
| A8 | 100 | 0 | 1 | 1 |
| A9 | 100 | 0 | 3 | 0 |
| A10 | 100 | 0 | 0 | 2 |
>TRINITY_DN115852_c0_g1_i6 from sample A1 / Example spliced isoformGAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCA
GAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTGTGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATT
GTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATCAGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTT
TGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCAAAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCA
TCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATTGGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGA
GTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAGCATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAG
AAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGCAGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGA
ACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGGTCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAA
TGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGGGAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCA
AATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAGTTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAG
GTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTTAGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACT
TAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAGTACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGC
CTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAACAACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCA
GAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGAAATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGA
TCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGATGAGGACATCAGTCAAAAGTGCTACATCTAATGGAGAGACTTCATTATATAAAACCAGAAGCAAAACTGGACTCCGAAATGTGAATT
CCAATGCTCATGGTTTATTGAAACAAAGATCCAATGCTTGCTTATCTGAAAGTGAAAAGCACTCAGGAGAAAGGACTGCAGGCTCTCTTGTGTTTACAGATGCAAATGCAAATATTTGTTCCAAAGGGCATCGACAAGAAAATCAAGGTTCAGAAGGCAGAAAGGTTAGGAGGAAAACTCCTATGACCAAGCCAATAAGG
AGGGTTTTGCGGAGTGTCAAAGAAACTAAAGAAAAAAGCAATAGATGTGCTTACAAAAGGCGGGGTGGACTAGCTGTGGCATGAGGTACTTGAGTGCCAAGCCTCTGTTAAGTGAAATATAGATTGACAATTTGCTCCTTTCTCTGGGCATCTCTCTGAAAATGGTTCCACAATGTCACGTCTGGCTAAGATTTAAGGGG
ATTTAATGAATGCATAAGTGAAGTGAGCTAACTGTTTCAACATCCAAGCTTATATGTAGATCAGTGATGATCTCTTTTTTCTTGTGAGCAATGATTGCTTACTTTGAACAGAATTATGATCTTTATCCCAATTCCAACTCTTGTACCAGAGCTACCCTTTTATATTGATAATGAATTTTTTTTGTTACTTGTAATATTTA
GCCTGTAATGGAGGGA
>TRINITY_DN115852_c0_g1_i15 from sample A1 / Example unspliced isoform:GAGAAACTGAGCATGCTCTTTTAGAGGCTAGACAATACCTGGTTGAATTTGTTGAGACATGTCGAGATACCCAGTTGCATCAATCCTCCTTGCAATTAGATTGCAACTCATCTACAGgttctccagaaattgttcttagttatttgatacactccctggcacaccatcctgattttcctgtttctaataaaagtttattc
gcagAAGCATTTGAGCCATTTTATCGGCAGTTGCATTTTTTTCTTTCAGAAATACTGCATGAAGATCCAAGTAAAACCCATGATTCAGAAAATACAAATAAACTCGATAATATTCCATTGATCCTGACAGTGTTTCGGACCATCAAGCAAATGGAAGATGCAGTTGACAAATCTAAGTCAAAGAACCTCTATGCCTTGTG
TGATCTTGGTCTTTGGATCATAAAGGACTTTGCTCACAGTCAGATCAACACAGGGAGTGAAGGAATATCAGTATCACTCCCACGATTGTACTGCAGGACTCAAGATGCCCATTTAAAGGAAGATGGGAGCCATTTACCTCCTTGTCTTGGGGATGATCTGTTGAGACGATTCAAAGCTGCAATTTTCCTCTCAAGTGATC
AGTTGACTCCGGATCAGAAGTTGTGCAAGAGCAGTGCATATGAGAATGCTCCAATCAGAGAAGGTAAGGGACTGGATGCTGAGAGTTTGGAGTCTGGAAATCCTTTAGAGCATTTTGAAGAACAATTCAAAAGAACAATATTAGAAGTGGTGCCTAGTGAAGTCAAGTCTGCTGAGGATAATGTTATGAATAATTTTGCA
AAAACAGCAGTTCTTTCCAAAAGGAAACGAGGCCGACCGAGTAAGAGAATGGGAGATTTGGCCTCGCAAGGAAATGGACAGGGCTCATCAGGTAAGGATTCTAATCACATGAAGTTGTCTCAACCACAGCGAGGGCATAAAAAATTTCTGGGTTGCAAACAAGCTGTTCAAAGCGAGAGAGAATCCACAGATTTAAAATT
GGCATCTGGAACTCAGGAGAATCCTGATGAAAAGTTATCTAATAGGAGTCCAGACAAGAATGTTCCCGAAGATGGTGAGAGTTTGGAGTCTGAAAAAGCTTCAGAACAGCATGAGGAGCAATCAAAAAGAATAATAGTAGAAGTGGCGCTCAATAAAGTCAAGTCTGCTGCAGATAATGTTATGATGACTGTTGCAGAAG
CATCGGTCCTTCCCAAAACGAAACAAGGTGGACCATGCGAGAATGGTCCCAATGATGGTCAGAGTTTTGAGTTTGAAAAGCCTTCAGAAAAGCATGGGAAGCAATCAAGTCCGCTGGTTCCCATTGGGGTCAAGTCCGCTGCAGATAATCTTATGATGACGATTGCAAAAGCATTGGTCCTTTCCAGAAGCAAACGAGGC
AGACCATACAAGGATGGTCCCAAAGACGGTGAGAATTTGGAGTTTGAAAAGCCTTCAGAACAGCATGACAAGCAATCGAAAAGCAGAACAAAAGAAGTGATACCCAGCGAAGTCAAGTCTGCTGCAGATAATGATATGATGACAGTTACAGAAGTATCTGTCTTTCCCAAAAGGAAGCGAGGCAGACCGTTCAAGAAAGG
TCCCAAAGATCATGAAAGTTTGGAGTTCGAAAATCCTTCAGAACAGCATGAAGAGCAATCACAAAGTACAATAAAAGCAGTTCTCAATGAAGTTAAGTCTGCTGCAGATAATATTATGATCTCAGTTGCAGAAGCATCAGTCCTTCCCAAAAGGAAACGAGGAAGACCCACTAAGGGGTCAGCAGATTTGGCCTCCCAGG
GAAATAGGCAAAGCTTATCAGGCAAGGATACTAATAAGTTGAATTTGTCTCGACCTAAGAGAGGGTATTTAAAATTCTCGGGATGCAAATCTGAGAGGATATTGAGAAGTCTCTCTAGAGCACCTGGGATGCGCCATAATGATCAACTGATCCAAAGAAGTAAATTTTCCAGACAGAAACAATCAAAGTGTTCAAGGAAG
TTGGATATGGAAGCAACATACAGGGTTGAACGAGAAAGAAAGAGGAAAACTTCAGATGTAGTTCCTCGGAAAAATATGGTTGGTGAGGTTAATTTTACCTCTGCCGATATAGAAGCATTGGCCTTGTCTAAGAGGAAAAAGAGGTGTGTCCGCAAGGAATCACCAGAGTTTCCTTCTCCAGGTCGGCAGCAATGCCTGTT
AGAGAAGTCTGAAGGCTTAAAGTTATCTCAATGCAGGGGAGGCTGTCCAAAAGGTTCAGGCAAAAGATCTGATTCTAACGAAAAACTTAAGTTGCCAGATTTGACAAGGGCTATTGAGAGAGTGCCAGTTGGGTCCTCAGGAGCTAAATTAACTCCTTACTGTCAACCATTAGAAGAAGATAATGTTTCTGGACAAAAAG
TACCAAAGAGTTCCAATAATAGGTTAGGTGACAATCATGATAAACTTGAAAAAACCATCGAGAAAAACCCACCAGGAGATCAAAAGCCTTCTACAGAAAATGAAACTCTGGATCTGAAGTCAGAGATTGTGTGTTTGCATGAAAAGAAACCTGCCAATCCACCAGAGTTTCCAGAGAAGGTATTGAATGAAGATGGAAAC
AACCCCAAAGGGACTCCAAGAAAGCTTTTAAGGAGCAAAAGATTCTCTGGAGTGGAGAAGAAACCTGCCAATCGACCAGAGTCTCCAGAGAAAGGATTGAATGAAGATGGGAATAACCACAGTGGGACTCCAGGAAGGCTTTTAAGGAGCAAAAGCTTCTCTGGACTGGAGAAAAGTGCTTCTCAAAAACTTGATAAGGA
AATTGGAGAGGAGTTGGTTGGGCATAGGATAAAGGTTTGGTGGCCACTAGATAAAAGATTTTATGTGGGAGTTGTGGAATCATATGATCCTGAATATAGAAGACACAAAGTGATTTATCATGATGGAGACATGGAAGTTCTAAGACTTGGGAGGGAGCAGTGGGAACTGATTGATGGTAAACCTATGTCTAAGAAGGCGA
TGAGGACATCAGTCAAAAGTGCTACATCTAATGGGTACTTATCAGATATGTTTCCATTAAAATGAAAGGAAGTTACTGGGGTATTGGTTTCTAAGTAGGATTGTTTTCTTATGTTTTGTTGGAAACATTGGTTTAAGCATTTGGAAGTGTTATTACCAG