sp|Q6WLH4|SMH3_MAIZE ----> Single myb histone 3
Intron 1 GTTGGTGTTT ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.63 | 35 | 8 | 4 |
| A2 | 15.38 | 33 | 9 | 3 |
| A3 | 8.33 | 33 | 1 | 5 |
| A4 | 20 | 28 | 10 | 4 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 29.73 | 13 | 1 | 10 |
| A8 | 20 | 6 | 0 | 3 |
| A9 | 20 | 20 | 7 | 3 |
| A10 | 18.75 | 13 | 2 | 4 |
>TRINITY_DN35096_c0_g1_i1 from sample A9 / Example spliced isoformTTTCAAATATTAATCGAGCCGTTCGCAACGGATACCCGCGACAATAATCTCCTCTGCGTCCCTCTTTCGATTCTCTCCTGCTCCATATTCGTTGTGCAACATTTTCTGCTTTCTTTCTTACTGAATCTTTCTTGGCCGTTGCAAATATCAGCTCGAAAAAATAGGGACTGAGGGGAAAACAGCGCACGATGTTTGCAAAA
CAAGTATTGACAGATGAAGAAAGAAGAGTGGATCCTCAGTTGGGTTATCCAAGAGGTTATGCCAAACTCTGCAGGAATGCCCATATTCAGATGCGGGGTCTCATCACCCCCTACACAGAGGGGCCTCCCCAGCGTTTTCTCCCTTATATATTGCAACCTGAAGATATAGCGAAAATGAAGGAGTTTAATGAACTATTCCC
AATTACTGAATCGGAAGAAAGAGACCCTTCAAGTGCCAGAAGATATGCAGATTCTCTGTGGAAGCAACTTGATCATTTGGGAAATGCAGGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCCTGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAA
GAGGGGGGAAAACAGTTCCCAGCAATCTGAGGTTGGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACCATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAAAAAATTCAGATTTCAGGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAA
AATGAACCATTGAATGAAGTTCTGGTTGCAGATAGCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCCCAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGCAACCGACCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAA
AAGATGGACGGTAGAAGAAGAGGAAGCTCTGCGTCGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAACCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGGTGAACTTTTTGTTTGTGACTTCAGAGCTTTGGTATGACGTTGATGAGATTTGTAAGCTTAATAAGGATT
ATGGGTCATCCAAAATGTAGGTATGCTTGGGCGATGAATGCTAGCATTCTTTGGTAGGGAATTGGCTTGCTGCCCTAGGGTTTGTTCTCTAGTGTCTACCCCTTTCCTACCCCTCTCCTAGGGTTAGTTGGCCTTCTAGGATGGAACATAGTCTTCCTACCTCTACCCTCTAGGTTGGATTTACCTATTTCGCC
>TRINITY_DN35096_c0_g1_i2 from sample A9 / Example unspliced isoform:TTTCAAATATTAATCGAGCCGTTCGCAACGGATACCCGCGACAATAATCTCCTCTGCGTCCCTCTTTCGATTCTCTCCTGCTCCATATTCGTTGTGCAACATTTTCTGCTTTCTTTCTTACTGAATCTTTCTTGGCCGTTGCAAATATCAGCTCGAAAAAATAGGGACTGAGGGGAAAACAGCGCACGATGTTTGCAAAA
CAAGTATTGACAGATGAAGAAAGAAGAGTGGATCCTCAGTTGGGTTATCCAAGAGGTTATGCCAAACTCTGCAGGAATGCCCATATTCAGATGCGGGGTCTCATCACCCCCTACACAGAGGGGCCTCCCCAGCGTTTTCTCCCTTATATATTGCAACCTGAAGATATAGCGAAAATGAAGGAGTTTAATGAACTATTCCC
AATTACTGAATCGGAAGAAAGAGACCCTTCAAGTGCCAGAAGATATGCAGATTCTCTGTGGAAGCAACTTGATCATTTGGGgttggtgttttcctaagccctagttagaacctaataatttatcttctgtttaccctcgttgaatcccataaccctcttgaatcgtaccttagcaataacccttccttttatttgttttg
gttggataccatggacccttagttttatcctggttcaatgtgtacctcataagatttgaattcttgccaatctcctagaattaaatatcagtttatatcgcttgcggtacattcttgagaactctctctctgtattttggcgtttggggaaaggggtttgataaagggagggctgtgcactattgttttgcagAAATGCA
GGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCCTGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAAGAGGGGGGAAAACAGTTCCCAGCAATCTGAGGTTGGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACC
ATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAAAAAATTCAGATTTCAGGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAAAATGAACCATTGAATGAAGTTCTGGTTGCAGATAGCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCC
CAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGCAACCGACCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAAAAGATGGACGGTAGAAGAAGAGGAAGCTCTGCGTCGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAA
CCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGTATCGACAAATGAAAGGAGACTGGGAATTAGAGAAGGAGAATAGAGCAGATGATCTTTCAGATAAGGAGTTAATTTTGTCTAGGACTGTTCAGAAAGAGAATAGGTTGAAGAAAATTAGAGAGCAGGAAATTCAGGCAAAGGAAGAGGAAATTGTCCA
GTTAGATAAGGATTTGAAAGAACTACAAGAACAAAATGAAGCAGAGCGTCTGGCATTAGAAGATTTGGAATCTATATTGATTAAGCACAGAAGAAGAGTGGAGAAGCAAAGGCGATGGTCTGAAACACAGTCTTCATATAGGATGTGCTTGGAGAAGATGATAAGAGATGCCATGCACCAGAGCATTGTGTATAAGGAAC
AGGGAAGGTTGAATCAAGCTGCCTGCAATGCCCTCATGGCAAGGCTGGAAACACAGAAGGCTACATGTGATGCATCTGAGATGGAACTTATCAAGAAAATCAAACAGAGAGAAGATCTAGAGTTGCTACTCCGCCCATGTATGGAACAGGCCAAGAAAAGCCTTCACGATGATAATTCAAGTTGCTCCAAGCAAAATATC
AAAATGGAGTTGGAGGAATTGCCAACTTGCTACCCCCGAGACACTGGATGTGCTCATTTTGCACATGTAGCTGAAGCTGATGTCAAGGAAGAGCCTGATACAGTAGTGAAGCACAAGGAATCCTTCCTCCCTCTTCTTGAGAGTAGAGAAGAATACTCTACAGAATTGCAGAAAGACTTGAAAATGTTTTCAAAAGAAGA
GAAAGCAGAAAGCAAGGCTAATATGTGCCTAATTGCCCCAAAAGAGCAATGCAGGGCAGAGATGGAGATAGTGCAAAATGAACCAGCTTTATCTGTCGCAAACATGGGCAGGAAAGTAGCAGTTACGGAAAAGTCAAGGCTGTCAGAAGCAGAAGAGAGTGACTTAGATGTCTTGATTGTTGGTTATGAGTATGAAGGGG
CTAAAGCTAGAGCCAGAGAAGCTGAATCTGTTGGGGAGAATCTTACCAGTGGTACATTATCAGATTTCAAGCAAACCAAATTTGAAGGTTGGGCAAAAGAGGACTGTGCATCCATGGTAGGAGAAAACAACGGATTGTCCAAACAGAGCACGGTAGCGAAAGAAGATCCAGCCTGTAAACCCCTGGAGGATGATCAGTTA
GATAAAATGTTTGGAGATGAATTAGCAATGCAAGGACAAGCAGAGGCAGTTATGGCAGATAAAATTACAGGGGAAGAAAACACTAATGACGATGAAAGAATTAAAACGGCTGACCAATCCAATTTAGATAAATGGTTGCATTCTCAGGCAGGAGAGGACACAGAACCAAAGAATAACATACTTACAGCAACACATGATGA
TTTCATTCCAACCCAAGTTGACGAGTCCAACAAACTCGGCTTCAGATCACCGCATCACAAGAAGATTCCTAGCTTTGGAGGGTTCGATGAGAAGACAGATATAAGGCATAGAAATACTAGACATGCAACTGAATCTGTTTTGACATTGGAAGCCGATAGTTTAGAGCTAGTAGAAAAGTTCCACTCTCTGCATTTGGCAT
GTAATGTTGAAGGTCATGAAGAAATGCAGACAAAGGTAGATGGTATATCTAGAACATTGAATACAGATACAGAGGTCTCGAAGAAAGGGAGTGAATTAGCAATCAAAGAAAATCCATGCAAAGAAATGGAGAATGAAAACCAAGCAATGACAACACCACTAGCAGTGGGAAATGTGGATGGAATGTTTGAACATGGAATC
AAGAAAATTTTGCAACAGCGAGAGGAGCTAAACAATTTTGATCGAGTAAAAGTTCAACAAACTGTAGGAAGGATCCCTACGAAAGGAGATTCTTATTACATGCCAGAACTGAAAGAATCAGAAGGAATCATCAGAGGAGACAAATCCATGAATATGAACTTAAGTGGGCAAGGAGGAGTAACAGAAGGAATAGTGATCAG
AAACAGTGTTCGAGACTGTTTGCAACAAAAAGAAAAAGAGTGCAGATTACAGAGAATTGAGAGTGCTGGTGTGTGCTCAAATGCAAATAATGCTACTGCTTCATTTTCGGGTGTACGGAGAACAGGGGGAGAGTCCAAAGGAAGGAATATGGTGTATGGAGAGGTGGTCCAAAGTGGAGAAAATGGAGAATTGGAAGAAA
CCAAAAGAGCAGGAGATGAGGATGGTCATAGTCATGGTCATCAGGGAGTGATGCTGCTGAAGAATGGCCTGAACGCATCGATTAAGACCTGTACCCATGTTTGGAGAAAGGCAATAAAAAGATTAGAGGGTGCAGCAATTGGAACAGATCACAACAGGAACGTTTAATTCAAATATGTTGACGGATTTTACTTCTACTCG
TTTCTGTTAGGATCTGTCAGCAACTGTCTATATGTTCTGAATTTCCGGAGTTTGAGATTCAGATTTATGTTTAACAGTTCAGTTAGAATTAATCAGTTACGAGCTGATTAGTTCCACTTTTGCCTTTTGTTTTTCATCCATTATGTTGGTACAAAAAAAATCTACAGTTTGTAGCCTTGTAGACTTCATTGTCAGACATT
GACATAAAGTATCAAAACTATGGTTCAGCTGAATTATATGAAGAATAACAAATGGTTCAGCTGAATTATATGAAGAATAACAAAGTTTGAATTTCACAACCCATCAATTCAAGTTTGCTGCTACCCTACTAAAGTTCATGATCATTTTAGTTCGGATTTGATCAGTTTTGACTTGTAGCTTGTCATTTTTCTCTTGCACA
AACACGTGTGTGAGTAACAATTCTTAATATCGATGAGAGTCCCATAACCACTTAACCATCTTATGAGCTACCTCCCATTAACCACACATCATGAGAATCTACGTCTCTTGACCTCCT
Intron 2 GTACCTATTC ... GTCATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.73 | 52 | 22 | 15 |
| A2 | 37.04 | 17 | 10 | 3 |
| A3 | 30.16 | 44 | 19 | 2 |
| A4 | 41.03 | 23 | 16 | 3 |
| A5 | 30.77 | 9 | 4 | 2 |
| A6 | 33.33 | 4 | 2 | 0 |
| A7 | 46.43 | 15 | 13 | 4 |
| A8 | 54.55 | 10 | 12 | 3 |
| A9 | 46.51 | 23 | 20 | 4 |
| A10 | 37.5 | 25 | 15 | 8 |
>TRINITY_DN38087_c0_g1_i1 from sample A7 / Example spliced isoformCAAATATTAATCGAGCCGTTCGCAACGGATACCCGCGACAATAATCTCCTCTGCGTCCCTCTTTCGATTCTCTCCTGCTCCATATTCGTTGTGCAACATTTTCTGCTTTCTTTCTTACTGAATCTTTCTTGGCCGTTGCAAATATCAGCTCGAAAAAATAGGGACTGAGGGGAAAACAGCGCACGATGTTTGCAAAACAA
GTATTGACAGATGAAGAAAGAAGAGTGGATCCTCAGTTGGGTTATCCAAGAGGTTATGCCAAACTCTGCAGGAATGCCCATATTCAGATGCGGGGTCTCATCACCCCCTACACAGAGGGGCCTCCCCAGCGTTTTCTCCCTTATATATTGCAACCTGAAGATATAGCGAAAATGAAGGAGTTTAATGAACTATTCCCAAT
TACTGAATCGGAAGAAAGAGACCCTTCAAGTGCCAGAAGATATGCAGATTCTCTGTGGAAGCAACTTGATCATTTGGGAAATGCAGGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCCTGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAAGAG
GGGGGAAAACAGTTCCCAGCAATCTGAGGTTGGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACCATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAAAAAATTCAGATTTCAGGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAAAAT
GAACCATTGAATGAAGTTCTGGTTGCAGATAGCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCCCAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGCAACCGACCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAAAAG
ATGGACGGTAGAAGAAGAGGAAGCTCTGCGTCGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAACCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGTATCGACAAATGAAAGGAGACTGGGAATTAGAGAAGGAGAATAGAGCAGATGATCTTTCAGATAAGGAGTTAA
TTTTGTCTAGGACTGTTCAGAAAGAGAATAGGTTGAAGAAAATTAGAGAGCAGGAAATTCAGGCAAAGGAAGAGGAAATTGTCCAGTTAGATAAGGATTTGAAAGAACTACAAGAACAAAATGAAGCAGAGCGTCTGGCATTAGAAGATTTGGAATCTATATTGATTAAGCACAGAAGAAGAGTGGAGAAGCAAAGGCGA
TGGTCTGAAACACAGTCTTCATATAGGATGTGCTTGGAGAAGATGATAAGAGATGCCATGCACCAGAGCATTGTGTATAAGGAACAGGGAAGGTTGAATCAAGCTGCCTGCAATGCCCTCATGGCAAGGCTGGAAACACAGAAGGCTACATGTGATGCATCTGAGATGGAACTTATCAAGAAAATCAAACAGAGAGAAGA
TCTAGAGTTGCTACTCCGCCCATGTATGGAACAGGCCAAGAAAAGCCTTCACGATGATAATTCAAGTTGCTCCAAGCAAAATATCAAAATGGAGTTGGAGGAATTGCCAACTTGCTACCCCCGAGACACTGGATGTGCTCATTTTGCACATGTAGCTGAAGCTGATGTCAAGGAAGAGCCTGATACAGTAGTGAAGCACA
AGGAATCCTTCCTCCCTCTTCTTGAGAGTAGAGAAGAATACTCTACAGAATTGCAGAAAGACTTGAAAATGTTTTCAAAAGAAGAGAAAGCAGAAAGCAAGGCTAATATGTGCCTAATTGCCCCAAAAGAGCAATGCAGGGCAGAGATGGAGATAGTGCAAAATGAACCAGCTTTATCTGTCGCAAACATGGGCAGGAAA
GTAGCAGTTACGGAAAAGTCAAGGCTGTCAGAAGCAGAAGAGAGTGACTTAGATGTCTTGATTGTTGGTTATGAGTATGAAGGGGCTAAAGCTAGAGCCAGAGAAGCTGAATCTGTTGGGGAGAATCTTACCAGTGGTACATTATCAGATTTCAAGCAAACCAAATTTGAAGGTTGGGCAAAAGAGGACTGTGCATCCAT
GGTAGGAGAAAACAACGGATTGTCCAAACAGAGCACGGTAGCGAAAGAAGATCCAGCCTGTAAACCCCTGGAGGATGATCAGTTAGATAAAATGTTTGGAGATGAATTAGCAATGCAAGGACAAGCAGAGGCAGTTATGGCAGATAAAATTACAGGGGAAGAAAACACTAATGACGATGAAAGAATTAAAACGGCTGACC
AATCCAATTTAGATAAATGGTTGCATTCTCAGGCAGGAGAGGACACAGAACCAAAGAATAACATACTTACAGCAACACATGATGATTTCATTCCAACCCAAGTTGACGAGTCCAACAAACTCGGCTTCAGATCACCGCATCACAAGAAGATTCCTAGCTTTGGAGGGTTCGATGAGAAGACAGATATAAGGCATAGAAAT
ACTAGACATGCAACTGAATCTGTTTTGACATTGGAAGCCGATAGTTTAGAGCTAGTAGAAAAGTTCCACTCTCTGCATTTGGCATGTAATGTTGAAGGTCATGAAGAAATGCAGACAAAGGTAGATGGTATATCTAGAACATTGAATACAGATACAGAGGTCTCGAAGAAAGGGAGTGAATTAGCAATCAAAGAAAATCC
ATGCAAAGAAATGGAGAATGAAAACCAAGCAATGACAACACCACTAGCAGTGGGAAATGTGGATGGAATGTTTGAACATGGAATCAAGAAAATTTTGCAACAGCGAGAGGAGCTAAACAATTTTGATCGAGTAAAAGTTCAACAAACTGTAGGAAGGATCCCTACGAAAGGAGATTCTTATTACATGCCAGAACTGAAAG
AATCAGAAGGAATCATCAGAGGAGACAAATCCATGAATATGAACTTAAGTGGGCAAGGAGGAGTAACAGAAGGAATAGTGATCAGAAACAGTGTTCGAGACTGTTTGCAACAAAAAGAAAAAGAGTGCAGATTACAGAGAATTGAGAGTGCTGGTGTGTGCTCAAATGCAAATAATGCTACTGCTTCATTTTCGGGTGTA
CGGAGAACAGGGGGAGAGTCCAAAGGAAGGAATATGGTGTATGGAGAGGTGGTCCAAAGTGGAGAAAATGGAGAATTGGAAGAAACCAAAAGAGCAGGAGATGAGGATGGTCATAGTCATGGTCATCAGGGAGTGATGCTGCTGAAGAATGGCCTGAACGCATCGATTAAGACCTGTACCCATGTTTGGAGAAAGGCAAT
AAAAAGATTAGAGGGTGCAGCAATTGGAACAGATCACAACAGGAACGTTTAATTCAAATATGTTGACGGATTTTACTTCTACTCGTTTCTGTTAGGATCTGTCAGCAACTGTCTATATGTTCTGAATTTCCGGAGTTTGAGATTCAGATTTATGTTTAACAGTTCAGTTAGAATTAATCAGTTACGAGCTGATTAGTTCC
ACTTTTGCCTTTTGTTTTTCATCCATTATGTTGGTACAAAAAAAATCTACAGTTTGTAGCCTTGTAGACTTCATTGTCAGACATTGACATAAAGTATCAAAACTATGGTTCAGCTGAATTATATGAAGAATAACAAATGGTTCAGCTGAATTATATGAAGAATAACAAAGTTTGAATTTCACAACCCATCAATTCAAGTT
TGCTGCTACCCTACTAAAGTTCATGATCATTTTAGTTCGGATTTGATCAGTTTTGACTTGTAGCTTGTCATTTTTCTCTTGCACAAACACGTGTGTGAGTAACAATTCTTAATATCGATGAGAGTCCCATAACCACTTAACCATCT
>TRINITY_DN38087_c0_g1_i3 from sample A7 / Example unspliced isoform:GGGAAAGGGGTTTGATAAAGGGAGGGCTGTGCACTATTGTTTTGCAGAAATGCAGGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCCTGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAAGAGGGGGGAAAACAGTTCCCAGCAATCTGAGGTT
GGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACCATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAAAAAATTCAGATTTCAGgtacctattccgttcaatttttgctccttggcaattagtactagaagcatacaactagaagcaatagcgat
ccatctgtttagggagtaactgggcgttttgttaatgaaaatgaaggtacaacactgttttaaatcctggattgcaacggtataaaactgttttactaagctcacaaactatgatgattgtcatggcagGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAAAATGAACCATTGAATGAAGTTCTGGTTGCAGATA
GCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCCCAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGCAACCGACCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAAAAGATGGACGGTAGAAGAAGAGGAAGCTCTGCGT
CGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAACCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGTATCGACAAATGAAAGGAGACTGGGAATTAGAGAAGGAGAATAGAGCAGATGATCTTTCAGATAAGGAGTTAATTTTGTCTAGGACTGTTCAGAAAGAGAATAG
GTTGAAGAAAATTAGAGAGCAGGAAATTCAGGCAAAGGAAGAGGAAATTGTCCAGTTAGATAAGGATTTGAAAGAACTACAAGAACAAAATGAAGCAGAGCGTCTGGCATTAGAAGATTTGGAATCTATATTGATTAAGCACAGAAGAAGAGTGGAGAAGCAAAGGCGATGGTCTGAAACACAGTCTTCATATAGGATGT
GCTTGGAGAAGATGATAAGAGATGCCATGCACCAGAGCATTGTGTATAAGGAACAGGGAAGGTTGAATCAAGCTGCCTGCAATGCCCTCATGGCAAGGCTGGAAACACAGAAGGCTACATGTGATGCATCTGAGATGGAACTTATCAAGAAAATCAAACAGAGAGAAGATCTAGAGTTGCTACTCCGCCCATGTATGGAA
CAGGCCAAGAAAAGCCTTCACGATGATAATTCAAGTTGCTCCAAGCAAAATATCAAAATGGAGTTGGAGGAATTGCCAACTTGCTACCCCCGAGACACTGGATGTGCTCATTTTGCACATGTAGCTGAAGCTGATGTCAAGGAAGAGCCTGATACAGTAGTGAAGCACAAGGAATCCTTCCTCCCTCTTCTTGAGAGTAG
AGAAGAATACTCTACAGAATTGCAGAAAGACTTGAAAATGTTTTCAAAAGAAGAGAAAGCAGAAAGCAAGGCTAATATGTGCCTAATTGCCCCAAAAGAGCAATGCAGGGCAGAGATGGAGATAGTGCAAAATGAACCAGCTTTATCTGTCGCAAACATGGGCAGGAAAGTAGCAGTTACGGAAAAGTCAAGGCTGTCAG
AAGCAGAAGAGAGTGACTTAGATGTCTTGATTGTTGGTTATGAGTATGAAGGGGCTAAAGCTAGAGCCAGAGAAGCTGAATCTGTTGGGGAGAATCTTACCAGTGGTACATTATCAGATTTCAAGCAAACCAAATTTGAAGGTTGGGCAAAAGAGGACTGTGCATCCATGGTAGGAGAAAACAACGGATTGTCCAAACAG
AGCACGGTAGCGAAAGAAGATCCAGCCTGTAAACCCCTGGAGGATGATCAGTTAGATAAAATGTTTGGAGATGAATTAGCAATGCAAGGACAAGCAGAGGCAGTTATGGCAGATAAAATTACAGGGGAAGAAAACACTAATGACGATGAAAGAATTAAAACGGCTGACCAATCCAATTTAGATAAATGGTTGCATTCTCA
GGCAGGAGAGGACACAGAACCAAAGAATAACATACTTACAGCAACACATGATGATTTCATTCCAACCCAAGTTGACGAGTCCAACAAACTCGGCTTCAGATCACCGCATCACAAGAAGATTCCTAGCTTTGGAGGGTTCGATGAGAAGACAGATATAAGGCATAGAAATACTAGACATGCAACTGAATCTGTTTTGACAT
TGGAAGCCGATAGTTTAGAGCTAGTAGAAAAGTTCCACTCTCTGCATTTGGCATGTAATGTTGAAGGTCATGAAGAAATGCAGACAAAGGTAGATGGTATATCTAGAACATTGAATACAGATACAGAGGTCTCGAAGAAAGGGAGTGAATTAGCAATCAAAGAAAATCCATGCAAAGAAATGGAGAATGAAAACCAAGCA
ATGACAACACCACTAGCAGTGGGAAATGTGGATGGAATGTTTGAACATGGAATCAAGAAAATTTTGCAACAGCGAGAGGAGCTAAACAATTTTGATCGAGTAAAAGTTCAACAAACTGTAGGAAGGATCCCTACGAAAGGAGATTCTTATTACATGCCAGAACTGAAAGAATCAGAAGGAATCATCAGAGGAGACAAATC
CATGAATATGAACTTAAGTGGGCAAGGAGGAGTAACAGAAGGAATAGTGATCAGAAACAGTGTTCGAGACTGTTTGCAACAAAAAGAAAAAGAGTGCAGATTACAGAGAATTGAGAGTGCTGGTGTGTGCTCAAATGCAAATAATGCTACTGCTTCATTTTCGGGTGTACGGAGAACAGGGGGAGAGTCCAAAGGAAGGA
ATATGGTGTATGGAGAGGTGGTCCAAAGTGGAGAAAATGGAGAATTGGAAGAAACCAAAAGAGCAGGAGATGAGGATGGTCATAGTCATGGTCATCAGGGAGTGATGCTGCTGAAGAATGGCCTGAACGCATCGATTAAGACCTGTACCCATGTTTGGAGAAAGGCAATAAAAAGATTAGAGGGTGCAGCAATTGGAACA
GATCACAACAGGAACGTTTAATTCAAATATGTTGACGGATTTTACTTCTACTCGTTTCTGTTAGGATCTGTCAGCAACTGTCTATATGTTCTGAATTTCCGGAGTTTGAGATTCAGATTTATGTTTAACAGTTCAGTTAGAATTAATCAGTTACGAGCTGATTAGTTCCACTTTTGCCTTTTGTTTTTCATCCATTATGT
TGGTACAAAAAAAATCTACAGTTTGTAGCCTTGTAGACTTCATTGTCAGACATTGACATAAAGTATCAAAACTATGGTTCAGCTGAATTATATGAAGAATAACAAATGGTTCAGCTGAATTATATGAAGAATAACAAAGTTTGAATTTCACAACCCATCAATTCAAGTTTGCTGCTACCCTACTAAAGTTCATGATCATT
TTAGTTCGGATTTGATCAGTTTTGACTTGTAGCTTGTCATTTTTCTCTTGCACAAACACGTGTGTGAGTAACAATTCTTAATATCGATGAGAGTCCCATAACCACTTAACCATCT
Intron 3 GTATGAGCTC ... TTGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.08 | 30 | 4 | 13 |
| A2 | 12.5 | 14 | 1 | 3 |
| A3 | 15.38 | 22 | 4 | 4 |
| A4 | 38.46 | 16 | 8 | 12 |
| A5 | 16.67 | 5 | 0 | 2 |
| A6 | 33.33 | 3 | 0 | 3 |
| A7 | 20 | 24 | 2 | 10 |
| A8 | 22.22 | 14 | 3 | 5 |
| A9 | 25 | 21 | 4 | 10 |
| A10 | 18.64 | 48 | 4 | 18 |
>TRINITY_DN97865_c0_g1_i3 from sample A4 / Example spliced isoformTATTAATCGAGCCGTTCGCAACGGATACCCGCGACAATAATCTCCTCTGCGTCCCTCTTTCGATTCTCTCCTGCTCCATATTCGTTGTGCAACATTTTCTGCTTTCTTTCTTACTGAATCTTTCTTGGCCGTTGCAAATATCAGCTCGAAAAAATAGGGACTGAGGGGAAAACAGCGCACGATGTTTGCAAATATCAGCT
CGAAAAAATAGGGACTGAGGGGAAAACAGCGCACGATGTTTGCAAAACAAGTATTGACAGATGAAGAAAGAAGAGTGGATCCTCAGTTGGGTTATCCAAGAGGTTATGCCAAACTCTGCAGGAATGCCCATATTCAGATGCGGGGTCTCATCACCCCCTACACAGAGGGGCCTCCCCAGCGTTTTCTCCCTTATATATTG
CAACCTGAAGATATAGCGAAAATGAAGGAGTTTAATGAACTATTCCCAATTACTGAATCGGAAGAAAGAGACCCTTCAAGTGCCAGAAGATATGCAGATTCTCTGTGGAAGCAACTTGATCATTTGGGAAATGCAGGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCC
TGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAAGAGGGGGGAAAACAGTTCCCAGCAATCTGAGGTTGGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACCATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAAAAAATT
CAGATTTCAGGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAAAATGAACCATTGAATGAAGTTCTGGTTGCAGATAGCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCCCAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGCAACCGA
CCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAAAAGATGGACGGTAGAAGAAGAGGAAGCTCTGCGTCGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAACCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGGTGAACTTTTTGTTTGTGACTTC
AGAGCTTTGGTATGACG
>TRINITY_DN97865_c0_g1_i1 from sample A4 / Example unspliced isoform:TGATAAAGGGAGGGCTGTGCACTATTGTTTTGCAGAAATGCAGGATTTGATCCTGCTAAGTTCAGAATAGATCCATATGGAAATGTGCTGTATATTAATGCAGACCCTGTTTCTCCGCTTGCTTGGGAGGTTGATCACTGGTTTCCTCATTCAAgtatgagctcagttacattttgtgctttcatgttcaacgagttaaa
aatacagaaaagtgtcaatgttggattccgatgccttctttgattgcatgcagGAGGGGGGAAAACAGTTCCCAGCAATCTGAGGTTGGTGCAATGGCAAGTGAATCAAAGGAAGCAGAACAAACTAGAATTCCTTGTACCATGGTGGGATCTGCAGCTTGGAGTTTCAGTTAACCAGTTTTTGTCTATATTTGCCTCAA
AAAATTCAGATTTCAGGCAGAGAGCATTTTCGTTGTTCTTTTTTGCAGGGGAAAATGAACCATTGAATGAAGTTCTGGTTGCAGATAGCCATTCCTGGCCTTCTTCTTTCCGCGAAAGAAAGAGTCAGTTTGGCCTTGCCCCAGCTGCTATAGTTACAGTACAGAAACAGGCAGACGATTCTTTGAAGCTTTTAAATGGC
AACCGACCTATAAATTCTGCTTGGCCTGTACCATCTGGTACACCCAGTAGAAAAAGATGGACGGTAGAAGAAGAGGAAGCTCTGCGTCGTGCAATTCACAAATTCGGTCCCGGTAACTGGAAGGAAATCAAGGAACACGAACCAGTGTTTAGGAACAGATCAACTGTACAAATCAAGGATAAGTATCGACAAATGAAAGG
AGACTGGGAATTAGAGAAGGAGAATAGAGCAGATGATCTTTCAGATAAGGAGTTAATTTTGTCTAGGACTGTTCAGAAAGAGAATAGGTTGAAGAAAATTAGAGAGCAGGAAATTCAGGCAAAGGAAGAGGAAATTGTCCAGTTAGATAAGGATTTGAAAGAACTACAAGAACAAAATGAAGCAGAGCGTCTGGCATTAG
AAGATTTGGAATCTATATTGATTAAGCACAGAAGAAGAGTGGAGAAGCAAAGGCGATGGTCTGAAACACAGTCTTCATATAGGATGTGCTTGGAGAAGATGATAAGAGATGCCATGCACCAGAGCATTGTGTATAAGGAACAGGGAAGGTTGAATCAAGCTGCCTGCAATGCCCTCATGGCAAGGCTGGAAACACAGAAG
GCTACATGTGATGCATCTGAGATGGAACTTATCAAGAAAATCAAACAGAGAGAAGATCTAGAGTTGCTACTCCGCCCATGTATGGAACAGGCCAAGAAAAGCCTTCACGATGATAATTCAAGTTGCTCCAAGCAAAATATCAAAATGGAGTTGGAGGAATTGCCAACTTGCTACCCCCGAGACACTGGATGTGCTCATTT
TGCACATGTAGCTGAAGCTGATGTCAAGGAAGAGCCTGATACAGTAGTGAAGCACAAGGAATCCTTCCTCCCTCTTCTTGAGAGTAGAGAAGAATACTCTACAGAATTGCAGAAAGACTTGAAAATGTTTTCAAAAGAAGAGAAAGCAGAAAGCAAGGCTAATATGTGCCTAATTGCCCCAAAAGAGCAATGCAGGGCAG
AGATGGAGATAGTGCAAAATGAACCAGCTTTATCTGTCGCAAACATGGGCAGGAAAGTAGCAGTTACGGAAAAGTCAAGGCTGTCAGAAGCAGAAGAGAGTGACTTAGATGTCTTGATTGTTGGTTATGAGTATGAAGGGGCTAAAGCTAGAGCCAGAGAAGCTGAATCTGTTGGGGAGAATCTTACCAGTGGTACATTA
TCAGATTTCAAGCAAACCAAATTTGAAGGTTGGGCAAAAGAGGACTGTGCATCCATGGTAGGAGAAAACAACGGATTGTCCAAACAGAGCACGGTAGCGAAAGAAGATCCAGCCTGTAAACCCCTGGAGGATGATCAGTTAGATAAAATGTTTGGAGATGAATTAGCAATGCAAGGACAAGCAGAGGCAGTTATGGCAGA
TAAAATTACAGGGGAAGAAAACACTAATGACGATGAAAGAATTAAAACGGCTGACCAATCCAATTTAGATAAATGGTTGCATTCTCAGGCAGGAGAGGACACAGAACCAAAGAATAACATACTTACAGCAACACATGATGATTTCATTCCAACCCAAGTTGACGAGTCCAACAAACTCGGCTTCAGATCACCGCATCACA
AGAAGATTCCTAGCTTTGGAGGGTTCGATGAGAAGACAGATATAAGGCATAGAAATACTAGACATGCAACTGAATCTGTTTTGACATTGGAAGCCGATAGTTTAGAGCTAGTAGAAAAGTTCCACTCTCTGCATTTGGCATGTAATGTTGAAGGTCATGAAGAAATGCAGACAAAGGTAGATGGTATATCTAGAACATTG
AATACAGATACAGAGGTCTCGAAGAAAGGGAGTGAATTAGCAATCAAAGAAAATCCATGCAAAGAAATGGAGAATGAAAACCAAGCAATGACAACACCACTAGCAGTGGGAAATGTGGATGGAATGTTTGAACATGGAATCAAGAAAATTTTGCAACAGCGAGAGGAGCTAAACAATTTTGATCGAGTAAAAGTTCAACA
AACTGTAGGAAGGATCCCTACGAAAGGAGATTCTTATTACATGCCAGAACTGAAAGAATCAGAAGGAATCATCAGAGGAGACAAATCCATGAATATGAACTTAAGTGGGCAAGGAGGAGTAACAGAAGGAATAGTGATCAGAAACAGTGTTCGAGACTGTTTGCAACAAAAAGAAAAAGAGTGCAGATTACAGAGAATTG
AGAGTGCTGGTGTGTGCTCAAATGCAAATAATGCTACTGCTTCATTTTCGGGTGTACGGAGAACAGGGGGAGAGTCCAAAGGAAGGAATATGGTGTATGGAGAGGTGGTCCAAAGTGGAGAAAATGGAGAATTGGAAGAAACCAAAAGAGCAGGAGATGAGGATGGTCATAGTCATGGTCATCAGGGAGTGATGCTGCTG
AAGAATGGCCTGAACGCATCGATTAAGACCTGTACCCATGTTTGGAGAAAGGCAATAAAAAGATTAGAGGGTGCAGCAATTGGAACAGATCACAACAGGAACGTTTAATTCAAATATGTTGACGGATTTTACTTCTACTCGTTTCTGTTAGGATCTGTCAGCAACTGTCTATATGTTCTGAATTTCCGGAGTTTGAGATT
CAGATTTATGTTTAACAGTTCAGTTAGAATTAATCAGTTACGAGCTGATTAGTTCCACTTTTGCCTTTTGTTTTTCATCCATTATGTTGGTACAAAAAAAATCTACAGTTTGTAGCCTTGTAGACTTCATTGTCAGACATTGACATAAAGTATCAAAACTATGGTTCAGCTGAATTATATGAAGAATAACAAATGGTTCA
GCTGAATTATATGAAGAATAACAAATGGTTCAGCTGAATTATATGAA