sp|O04251|Y4211_ARATH ----> BRCT domain-containing protein At4g02110
Intron 1 GTAAGCACTT ... CATCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.46 | 45.8 | 8 | 17 |
| A2 | 20.69 | 23 | 9 | 3 |
| A3 | 15.52 | 49 | 9 | 9 |
| A4 | 8.33 | 11 | 0 | 2 |
| A5 | 33.33 | 1 | 1 | 0 |
| A6 | 19.1 | 36 | 5 | 12 |
| A7 | 23.31 | 51 | 19 | 12 |
| A8 | 21.99 | 55 | 22 | 9 |
| A9 | 21.32 | 38.8 | 15 | 6 |
| A10 | 23.88 | 51 | 23 | 9 |
>TRINITY_DN47496_c0_g1_i1 from sample A10 / Example spliced isoformGTTGTCTAATAACTATTTATTTTTATGTTCTAGCATTCTTAACTGTTTGTTATTGAGATATATCTATCCAAAGTTATTCAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATAATCTCCTC
TGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAA
GTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAG
AAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGAC
ACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGC
CAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTG
GTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGT
TTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAG
TCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATGAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCAAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCT
TTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATC
TTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTA
CTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCA
AGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATATATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGT
GTGCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTAT
GTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTC
ACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATT
GGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGAAAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGCACATGCTCTAT
TTACAATATTTAGAATGCCC
>TRINITY_DN47496_c0_g1_i7 from sample A10 / Example unspliced isoform:GTTGGTTGCTAAGCATATTTCAGTTTCTCTCAAGCCAACCTATCCAATATTATTTTGGAAAGATGTGTTTAGATTTGAAACATAAGCTCTTTTTTTTTCCCTTTTGTCTTCTATTTGTGATTTATCAAGTTTTTATTTTGTTTTCTCTAATGTTTGGATGCACTGCAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGG
CCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAG
AGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGA
GCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAAC
AGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGAC
GTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGC
TATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCA
CATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGAC
AATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCA
GTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATA
AAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGA
GGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGAT
CTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGG
AATCAGAAACTCCCCAGAGTAAGATAGATGAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCAAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGA
GCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAA
AGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATG
AACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGgtaagcacttagggttttttctagaaggaaaaatttatcata
ctgttataatagatgtttattttgatatctttggctattagtggcattattggatcctcttccatcatgcagGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATAT
ATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGTGTGCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAG
GTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTG
AAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTAC
ATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTT
TGGTCCAGAAAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGCACATGCTCTATTTACAATATTTAGAATGCCC
Intron 2 GTAAGCACTT ... AAACGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.54 | 16 | 8 | 21 |
| A2 | 76.47 | 2 | 9 | 4 |
| A3 | 47.83 | 12 | 9 | 13 |
| A4 | 36 | 8 | 0 | 9 |
| A5 | 40 | 3 | 1 | 3 |
| A6 | 48.94 | 12 | 5 | 18 |
| A7 | 59.38 | 13 | 19 | 19 |
| A8 | 49.49 | 25 | 22 | 27 |
| A9 | 60.98 | 8 | 15 | 10 |
| A10 | 72 | 7 | 23 | 13 |
>TRINITY_DN47496_c0_g1_i9 from sample A10 / Example spliced isoformGAGAATGCATTGCCCCAAGTTTGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATATATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGTGT
GCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGT
GGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTT
>TRINITY_DN47496_c0_g1_i7 from sample A10 / Example unspliced isoform:GTTGGTTGCTAAGCATATTTCAGTTTCTCTCAAGCCAACCTATCCAATATTATTTTGGAAAGATGTGTTTAGATTTGAAACATAAGCTCTTTTTTTTTCCCTTTTGTCTTCTATTTGTGATTTATCAAGTTTTTATTTTGTTTTCTCTAATGTTTGGATGCACTGCAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGG
CCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAG
AGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGA
GCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAAC
AGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGAC
GTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGC
TATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCA
CATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGAC
AATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCA
GTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATA
AAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGA
GGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGAT
CTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGG
AATCAGAAACTCCCCAGAGTAAGATAGATGAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCAAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGA
GCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAA
AGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATG
AACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGgtaagcacttagggttttttctagaaggaaaaatttatcata
ctgttataatagatgtttattttgatatctttggctattagtggcattattggatcctcttccatcatgcaggatactttgaaacgtgcagTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATAT
ATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGTGTGCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAG
GTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTG
AAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTAC
ATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTT
TGGTCCAGAAAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGCACATGCTCTATTTACAATATTTAGAATGCCC
Intron 3 GTAAGCACTT ... CATCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.98 | 46 | 0 | 17 |
| A2 | 11.54 | 23 | 0 | 3 |
| A3 | 15.52 | 49 | 0 | 9 |
| A4 | 15.38 | 11 | 0 | 2 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 25 | 36 | 0 | 12 |
| A7 | 19.05 | 51 | 1 | 12 |
| A8 | 14.06 | 55 | 0 | 9 |
| A9 | 13.33 | 39 | 0 | 6 |
| A10 | 15 | 51 | 2 | 9 |
>TRINITY_DN42211_c0_g1_i4 from sample A8 / Example spliced isoformCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACGGATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCTTTGTGTTTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTAT
GAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGATTGCAAAAGAAGTTACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATTGCTTGAAGGCTTGGGCATTGCTTCCTGAAGAGAATTATCAAAAGAGTG
GATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTG
CCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAG
AGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGT
CTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAA
GGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATTATCTCCTCTGTTAGCAAACTCCATTC
GGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAA
GGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAAT
GGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTC
CATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTT
GTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGAT
ATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCC
TAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGC
TAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATGAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCAAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGAT
GGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTT
TCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTG
CAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGGATACTTTGAAA
CGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATATATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGTGTGCAAGCCAGGTTATCC
TCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAATGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAG
ATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCA
TTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTT
CTTATGGTTTGGAACTGTTTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGAAAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGCA
>TRINITY_DN42211_c0_g1_i3 from sample A8 / Example unspliced isoform:AGAATGCATTGCCCCAAGTTTGgtaagcacttagggtttttttctagaaggacaaatttatcatactgttataatagatgtttattttgatatctttggctattagtggcattattggatcctcttccatcatgcagGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATAT
AATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATATATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTGTGTTTTGGTTGACTACTTAGTTGAATATGTGTGCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTT
CAAAAATATGGAAATGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTG
CAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATG
TACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGTTTTGACATTTTTATTGAAATAAAGGTGCTTGAA
ACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGAAAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGCA
Intron 4 GTTATCCTCT ... TTTATAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.48 | 26 | 32 | 21 |
| A2 | 73.68 | 5 | 15 | 13 |
| A3 | 43.51 | 37 | 28 | 29 |
| A4 | 66.67 | 11 | 23 | 21 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 61.54 | 30 | 45 | 51 |
| A7 | 64.82 | 35 | 63 | 66 |
| A8 | 62.56 | 41 | 60 | 77 |
| A9 | 63.16 | 21 | 30 | 42 |
| A10 | 57.41 | 23 | 28 | 34 |
>TRINITY_DN42199_c0_g1_i4 from sample A9 / Example spliced isoformCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAA
TAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAA
TTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTC
GTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACAC
AGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAA
TAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGA
CAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAA
GACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATG
GTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGAT
CTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTT
GGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTG
GAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAG
GTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTAC
TGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAA
TAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGG
TGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATG
CATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACA
GCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAG
ATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATG
GGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCA
GTTTTCTGAAGTTTTGGTCCAGACAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC
>TRINITY_DN42199_c0_g1_i3 from sample A9 / Example unspliced isoform:CTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAA
TAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAA
TTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTC
GTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACAC
AGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAA
TAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGA
CAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAA
GACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATG
GTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGAT
CTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTT
GGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTG
GAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAG
GTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTAC
TGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAA
TAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGG
TGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATG
CATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGgttatcctcttgataaacatgttctttataatagCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGA
ACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGC
TGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAA
CGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTC
AAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGACAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC
Intron 5 GTAGAATGCC ... TGAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 15 | 0 | 9 |
| A2 | 52.63 | 18 | 2 | 20 |
| A3 | 45 | 22 | 3 | 18 |
| A4 | 59.09 | 18 | 0 | 26 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 42.86 | 4 | 0 | 3 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 50 | 1 | 0 | 1 |
| A10 | 0 | 1 | 0 | 0 |
>TRINITY_DN118808_c0_g1_i6 from sample A3 / Example spliced isoformAGCGAAACTTGAGGTATATGTACTTCTGCAGATCCGCATTTTATTTCCAGGTTTCATCCGTAGATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGAAGAAATATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAAC
CAGGGAAATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGGTTCCCTAATATGAACCTGTCACACCTTTATTTTCAGTTTGACATATTTATTTTTCTTTCG
>TRINITY_DN118808_c0_g1_i4 from sample A3 / Example unspliced isoform:CCAGGTTTCATCCGTAGgtagaatgccgaattttaagccctaagtttggtactctggtatagcgtcgattgctgaagaatgctcctgaaatattccaattttgcgttttttccggtggctgatgttaatttgaacactttgaatggcagATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGA
AGAAATATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAACCAGGGAAATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGTATGCTACGGAGCTTGAAAATAATGGTGGATTCAATGTGGGTCGGTAT
GATGCAAGCTGCACTCATGTCATTGTACATGGGCTTACATATGATGACCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACGGATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCT
TTGTGTTTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTATGAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGATTGCAAAAGAAGTTACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATT
GCTTGAAGGCTTGGGCATTGCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACA
CCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGTGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGA
AGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCCTCTAGGTT
CTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGAC
AATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGA
AGGACTTTCAACAAAAAAAATTATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAG
CAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGA
AAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAAT
AAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAG
AGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCT
AATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCAAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAA
CCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGC
AAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATGAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCAAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAG
ATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAA
CAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTG
CAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGA
ATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTATTGCTCGAGATGATATATGGGTTCAGGAGTTTATTCGCTGCAACATTGCTTG
TGTTTTGGTTGACTACTTAGTTGAATATGTGTGCAAGCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAA
GGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAAT
GCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCCATGG
Intron 6 GTATTGCTCG ... TTTATAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.04 | 26 | 48 | 37 |
| A2 | 86.67 | 5 | 32 | 33 |
| A3 | 60.43 | 37 | 67 | 46 |
| A4 | 75 | 11 | 32 | 34 |
| A5 | 100 | 0 | 9 | 8 |
| A6 | 68.42 | 30 | 50 | 80 |
| A7 | 75.27 | 35 | 96 | 117 |
| A8 | 74.77 | 41 | 110 | 133 |
| A9 | 77.78 | 21 | 61 | 86 |
| A10 | 70.89 | 23 | 49 | 63 |
>TRINITY_DN42199_c0_g1_i4 from sample A9 / Example spliced isoformCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAA
TAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAA
TTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTC
GTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACAC
AGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAA
TAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGA
CAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAA
GACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATG
GTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGAT
CTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTT
GGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTG
GAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAG
GTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTAC
TGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAA
TAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGG
TGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATG
CATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACA
GCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAG
ATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATG
GGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCA
GTTTTCTGAAGTTTTGGTCCAGACAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC
>TRINITY_DN42199_c0_g1_i1 from sample A9 / Example unspliced isoform:GCTTCTCCCGCCACACTCAAACAAATTGAATTTATTTCTCCCTCCAAATCTTTCCCAAAAACTCTGTATATGTTATCACCAAAAACATTTTCGCTTAAAACCAGATATATCATTTTGCCGATGATCCATCAGCAAAACTTGAGATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGAAGAAAT
ATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAACCAGGGAAATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGTATGCTACGGAGCTTGAAAATAATGGTGGATTCAATGTGGGTCGGTATGATGCA
AGCTGCACTCATGTCATTGTACATGGGCTTACATATGATGACCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACGGATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCTTTGTGT
TTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTATGAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGATTGCAAAAGAAGTCACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATTGGTAAA
TCATGCCTTGTCCTTCTTGTGCATTGCTTGAAGGCTTGGGCATTGCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAA
GCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCA
TGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACA
GGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGA
TATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATG
ATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAAT
CGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGA
TAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAA
AGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCA
GAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAA
CATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAG
TGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGAC
AGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAG
TGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGC
ATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCA
CTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGG
TTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGgtattgctcgagatgatatatgggttcagg
agtttattcgctgcaacattgcttgtgttttggttgactacttagttgaatatgtgtgcaagccaggttatcctcttgataaacatgttctttataatagCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACA
CAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATAC
TCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGA
ATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGACA
ATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC
Intron 7 GTAAATCATG ... ATTGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.65 | 21 | 11 | 3 |
| A2 | 29.48 | 33.3 | 13 | 0 |
| A3 | 20.12 | 25 | 6 | 3 |
| A4 | 28.57 | 22 | 8 | 0 |
| A5 | 8.93 | 12 | 1 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 27.78 | 5.3 | 2 | 0 |
| A8 | 100 | 0 | 1 | 0 |
| A9 | 0 | 1.3 | 0 | 0 |
| A10 | 21.64 | 7.7 | 2 | 0 |
>TRINITY_DN125544_c0_g1_i5 from sample A1 / Example spliced isoformCTTGAGGTATATGTACTTCTGCAGATCCGCATTTTATTTCCAGGTTTCATCCGTAGATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGAAGAAATATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAACCAGGGAA
ATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGTATGCTACGGAGCTTGAAAATAATGGTGGATTCAATGTGGGTCGGTATGATGCAAGCTGCACTCATGTCATTGTACATGGGCTTACATATGATGACCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACG
GATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCTTTGTGTTTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTATGAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGAT
TGCAAAAGAAGTTACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATTGCTTGAAGGCTTGGGCATTGCTTCCTGAAGAGAATTATCAAAAGAGGTAGGCTTTATTATTGCCATTCCCATGTAGAAGTTGCTCCACTACAA
AAAGATAAACACATTTAGAATTCAAC
>TRINITY_DN125544_c0_g1_i1 from sample A1 / Example unspliced isoform:CTTGAGGTATATGTACTTCTGCAGATCCGCATTTTATTTCCAGGTTTCATCCGTAGATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGAAGAAATATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAACCAGGGAA
ATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGTATGCTACGGAGCTTGAAAATAATGGTGGATTCAATGTGGGTCGGTATGATGCAAGCTGCACTCATGTCATTGTACATGGGCTTACATATGATGACCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACG
GATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCTTTGTGTTTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTATGAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGAT
TGCAAAAGAAGTTACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATTGgtaaatcatgccttgtccttcttgtgcattggtatgaaaggatgcatctattacataagtagaagtaatgcttgaaaatttgttaattgcat
gatttggttgtttttttttgatgacatgaaaaatctcattagtcttattgcaatgcaaacgtttcactaattgttaatcattgttgtagCTTGAAGGCTTGGGCATTGCTT
Intron 8 GTATTGCTCG ... TGCAAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.53 | 32 | 46.3 | 37 |
| A2 | 70.79 | 15 | 31.7 | 41 |
| A3 | 64.9 | 28 | 63.7 | 40 |
| A4 | 59.64 | 23 | 31 | 37 |
| A5 | 76.92 | 3 | 9 | 11 |
| A6 | 56.63 | 45 | 48.6 | 69 |
| A7 | 63.1 | 63 | 94.4 | 121 |
| A8 | 66.5 | 60 | 109.3 | 129 |
| A9 | 69.98 | 30 | 60.9 | 79 |
| A10 | 64.23 | 28 | 47.6 | 53 |
>TRINITY_DN42199_c0_g1_i3 from sample A9 / Example spliced isoformCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAAGCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAA
TAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCATGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAA
TTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACAGGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTC
GTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGATATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACAC
AGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATGATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAA
TAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAATCGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGA
CAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGATAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAA
GACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAAAGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATG
GTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCAGAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGAT
CTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAACATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTT
GGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAGTGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTG
GAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGACAGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAG
GTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAGTGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTAC
TGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGCATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAA
TAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCACTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGG
TGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGGTTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATG
CATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGA
ACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACACAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGC
TGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATACTCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAA
CGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGAATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTC
AAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGACAATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC
>TRINITY_DN42199_c0_g1_i1 from sample A9 / Example unspliced isoform:GCTTCTCCCGCCACACTCAAACAAATTGAATTTATTTCTCCCTCCAAATCTTTCCCAAAAACTCTGTATATGTTATCACCAAAAACATTTTCGCTTAAAACCAGATATATCATTTTGCCGATGATCCATCAGCAAAACTTGAGATCAATATTGTTGCGGGGTGTTTGGAGGAAATGTCTGTAAAATAAGTTAGAAGAAAT
ATTTAATGGAGCGGAGAAATGAAAACAAGGGTTTAGCTGCTCTCGATAACGAGGACACCGTACAGTGTAGCATTGAAAACCAGGGAAATGTATTCCAGGGTGTTCGTTTTTTTCTAGCTGGATTCGATCCTTCTGCAGAAATCCAGTATGCTACGGAGCTTGAAAATAATGGTGGATTCAATGTGGGTCGGTATGATGCA
AGCTGCACTCATGTCATTGTACATGGGCTTACATATGATGACCCAATTTGTGCTGCTGCAAAAAAAGATAACAAGATGCTGGTTACGGATTTGTGGGTTGTGGATTCCTTGGACATGGGAATGCTAGCTGACTCTACAAAGATTTTGTACAAGCCTGTAAGAGATTTGAATGGCATTCCAGGTAGTAAGTCCCTTTGTGT
TTGCCTAACCGGATACCAAAGTCAAGATCGATCTAACATTATGAGAATGGTAGACATGATTGGAGGACGGTTCACAAAGCCATTGATTGCAAAAGAAGTCACCCACCTTATTTGTTACAAGTTTGAAGGTGACAAATACAAGCTTGCAAAACAAATGGGACTAAAGTTAGTGAGTCATCGTTGGCTTGAAGATTGGTAAA
TCATGCCTTGTCCTTCTTGTGCATTGCTTGAAGGCTTGGGCATTGCTTCCTGAAGAGAATTATCAAAAGAGTGGATGGGAGCTTGAGCTTTTAGAGGCAGAGGCCAGAGATTCTGAGGATGAAGGGGTAGGTAAGGTTGGCAGTCCTATGCCCTCTAGGAAGATTATTTCGTCAGCAAGTCATATTGGTAGTGCACACAA
GCCTCCTAGGATATCAAATACCACACCATCACATGTACATGATAATAAGACTTTGCATACACCAAAATCTGTGCCCAAAGCAAGCCCAGAAGCAGGTGCGCAGAGCAAGGGGACACATAGTTCAACAAAATGTGATTTAGGTTCTTTGCTTACAAAGAAAGGTGAAACAAATAAAGAATCAGATGTGAAGGCAAAGGGCA
TGCATCTTGAAAAAGTAGGTATTGAAGAGCAGGAGATAGCAGGAATTCATTCTCCAGCCCTGGGAAAAGAAAGAGATGTAATTGGAGGTATGGCTTCAGTGGAGCAGGAGATTCTCACTTCAGCTGTTCATTCATCCTCTGTCGTAGGCTATGCAAGAAAAACTCCTAGCAAGTCTGGAACAGGTAATACTACTGAAACA
GGGAGGATTGAAACGCTTCTGGGTTCTGGACAGGGATTCCATCTCGTGTATGAAAAGGGTGAAATTGGCAAGTCTCCATTGTCAAATAACATGTCTTATGAACAGGCTCAGGTTCATAGTGAAAATGTCCATAAAAATATCCAATCAAGAGATAGAGAAGCTATTGAAATAAATGTCAAAACCAGCCTGCTTGACAATGA
TATTGAAGTAAACCAGCAGTCTGACAATGGGCCAACTGTTCACACAGATAGCCAATTTAGACCTCATTCAGAAGGTATCAAAACACAGACATGTCAAGGTGACGTACTTGTTGATTCCAATTCTGGGTTTAAGAAGGTCAGGAGGTCTGATGTCATAGCAGATTTGCCAAATATTTCAAGTAGACCTGAAACTCTTGATG
ATGGAAAGGTTGTTAAGCATGCCGAAGGACTTTCAACAAAAAAAATAATCTCCTCTGTTAGCAAACTCCATTCGGCAAATGATGAGTCTCCCAATTTGGGAGCTATAAATTCAGTGGACAACTTGAGTGGAGTTATAGAAAAAGATTGTGATGACATCATTGCAAATGAACTGCAGACATCTGGCATTGAGATGCAAAAT
CGAGATTGCCAATCAGAATTGTCAGCAAGTCGGAAGAGGCAAAGACAGACCAAAAGTTATGGTCCAAACAAAAGGAAAAATACAATGTCAGGTAGTCATCTCACATCATTAAATAAGGCACTGCCCTCCAAATCAGGTGAAGTCAGTCATGGAGAAGAAATGCTCAGAATGGAATCAAGTGCAGAGAAAGAAAACATAGA
TAAGGGGGTAGCTGAAATAAAGGGAAAGTTGGACAATGATTTCAAGACAACAGAGAAAGAAAACCTAGATAATGGGGCAGTTGAAATAAAGAGAAAGTTGGACAATGATTTCGAGACACCAGAGAAAGAAAACCTAGATAGTGTGGTAGTTGAAATACAGAGGAATTTGGACAATGAATTCAAGGCATCAGAGAACGAAA
AGCTAGATAATGGGGTAGCTGAAATAAAGACAAAGTTGGACCATGGTTCCAAGACACCTCCCACTTTGACTTCCATGAATTCAAATTGCATCACTTCCTTGCAGTCTGTTCCTACAAATGACAACTCTGTTTTACCTCAGAAGAAGGGTAGAAAGCCAGGAATAAAGAGGAAAACAGGGGTTAAAAAATCTTATATATCA
GAAGTTGAGATTGATACTTCCAAAGAGAAGGTAAGATCCTTTGATCTGAATGTGCCAAATGAAATAGAAATTTGTGATCCTCAAGTGGAGCTTACTGCTGATAAAAGGCATGAAGCTTCTTCAGATTTAGCTTACAAAGCTGCTCGATTAAAGCCTGATGCTTTAGATGATAATCAACCGTCTTTATCTGAACAAGGCAA
CATTGCTCCCATAGGTTTTATTTCTAATGAAGAAACCGTGTCCTTGGATACTTTGGTTGAAAAAAATCATGATATAGCTTTGACAGAAAAGCCGAGGAAAAGAGGAAGGCCTGCTACCAAAAAACGGAAATCCTCAGAACTGGAAAATCTTGATCCAGCGATCAAAGAAACAAAAGATTGGGATAACAATGAATCTTCAG
TGGTTAAGGCTAAACCACTTGATAACCACCTAGCTTCAAAGCCTGGAGCATTGGTTTCTCAAAGTGGAAGTCCTAACACACTATTTAAGGAGAAATCTAAGATCTCCCCATCACCTGGGTCGAACAGTTCCCCATACAAATCAAATGGTAAACCAGGATATAGTAATGAGAATGTGCATAGTTGTGCCTTATCTGTAGAC
AGTGAATTGGGTTTGAAAAGTCTGCAAGTTGATCAAATTTCAGAGGTGTCTAAAGTCTCTCAAAAGAAGCAGCTAGTAGAAACAAAGGATGCTGAACACTTGGAATCAGAAACTCCCCAGAGTAAGATAGATAAGACACCGGAGACTAATCAAAGGAACAAGAAGCAGAAGAATCGAGCTTCTATAAAGGCTAAAAGTAG
TGCTAAGACCACTCACACAACTGAGATAAAGGCACTGTCTGTTACTGATAAATCTTTGGAATACATGCATGATGGAAAGAAAAAGGTTTCTAATCTGAACAGAGCTCCTAAAGTCAAATCAGGAAAACTTGCCAAAATAGAGAAATCCACCAAAACTGCTAAGAATCCCAGGCAGGATTCCCAGAGTATTGCATTACAGC
ATGTTAAGGATGCTAGTCAGCTAAACAAACAGGAAATCTCTGAAATAGTGGTATCTTCAGAGCCAAGATATTTTCTATTGAGTGGGCATCGTTTACAAAGAAAAGAATTTCAGCAGTTAGTCAAGAGTTTAGGAGGGAAGGTGTTGAAGGATTCTCATCAGTGGTCTTATCAAGCCACTCATTTAGTGGTTCCAGAGCCA
CTACGTCGAACAGAAAAGTTTTTTGCAGCTGCTGCAGCTGGCAGGTGGATAATTACTACAGATTATCTTACTGCAAGCAAACAAGCAGGAAGATTTCTTGATGAACAAGAATATGAATGGCACAAAAGTGGATTGAATGAAGATGGTACCATCAGTTTTGAAGCTCCTAGAAAATGGCGTTTGTTGCGAGAAAAAACTGG
TTATGGTGCACTTCATGGTTTTCGAATTATTGTCTATGGAGAATGCATTGCCCCAAGTTTGGATACTTTGAAACGTGCAGTAAAGGCGGGAGGTGGACTCATTTTAGCAACTAGTCCTCCATATAATCGATCCCTTGTGGCTGGTGTTGATTTTGCTGTTGTTAGCCCAGgtattgctcgagatgatatatgggttcagg
agtttattcgctgcaacattgcttgtgttttggttgactacttagttgaatatgtgtgcaagccagGTTATCCTCTTGATAAACATGTTCTTTATAATAGCCATTCAGCAGTAGAGAAGTTCTTCAAAAATATGGAAACGAACACCCTGCCTGCACAATCTAGCAATGTGTCACAGCAAACACTTCTAGGTGAAAGGACA
CAGAACAGTGTGGAGGAAGAGGAAAGGAGACAAGATGATATTTCATGCTCTGTATGTGGATCTGCAGATAGAGATGATGTTATGCTTCTGTGTGGGGATGGACAAGGGAGAGGCTGTGGTGTTGCAATGCATATTGATTGCTGCCAGCCTTCTTTAGCTAAAGTTCCAGAAGAAGATTGGTTTTGTTTGAAATGTCATAC
TCCTCCAGATATCCAAAACTCTAATGCAAAAAAAGTCAAGAAATCATAATTTGTCACTGATTTTACTAATGCATTGAACTGTCATACTACCAGTTCAATTATATGAATGGTTCTTCATTTGATGTACTCTCTGAAATGTAACGCAGAAGAGCTGTATAACAGATTTTATTCTATGGGATCCTTTTGTACATTGATATTGA
ATTAAGTAATGTCAAAAGTTTAAAACATCTGCATGAAAATAGGTGTGCATGCATTGGACCATAGGACCGGTTTCTTATGGTTTGGAACTGATTTGACATTTTTATTGAAATAAAGGTGCTTGAAACCTCAAATAGAAATTCAAAACAGGCATGCATGTATCAGAATTCAGAACCAGTTTTCTGAAGTTTTGGTCCAGACA
ATCATACTTGTTAAAAATACAGTTCTAGACTACTAAATTACGGC