sp|Q9XGY4|TIM8_ARATH ----> Mitochondrial import inner membrane translocase subunit TIM8

Intron 1 GTGGATTGGA ... AATATTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	83.76	19	98	7
A2	75.93	26	82	1
A3	80.85	27	114	4
A4	69.74	23	53	1
A5	78.57	9	33	1
A6	81.95	265	1203	17
A7	83.95	157	821	19
A8	82.53	224	1058	30
A9	83.08	202	992	43
A10	83.19	117	579	26

>TRINITY_DN43939_c2_g2_i4 from sample A7 / Example spliced isoform

ACTCTCTCTATATAAAATAAAATAAAAGGCCATATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAA
TGAACTCGTAGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCC
AGAAGCTTGTAGTTTCAAATGCATTAAGATGAAGAGTTAGAAAAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGGTTTACATATGTTTTCTGAAAGAGCCATGATGAACTGATGTTGGATTGACAAAGGGTGATAGTCTTCTCGAC
ATTGATTTGATTGACAAAGGATGCTAGTCTTCTTTGAGAGATCGTAGAGCCAACAGCGTCCTGATCAAGCAATCTACCATCAGCAACTGCCATTTCAGCGTGATCTCAGAGTGACCACCGATCTATCAGCGTGGGCATCTCATCTACAGTGTGGGCATTTCTTCATTCAGCAATTCAGGATCCACGAGTCCCCGATCCAC
CGATCCACCTGATCGTGGAGCAATTCAGCCATCAAGCAGAGCTAGCACCGATTTAGTGTAATCCTGAACCAATGATCCAGCAAAGCAAGCCATTCCGGCCATTCCAGCGATCATACAAGCAACCGATGCGATCCATTAGAGATTCAGCAGTACCAATCCGCAGACCAACAATCCAATAGATCACAGATCCAGGGACCTCT
CCCACCAGCAATCTCAGTGATCGGCGTTTACAACAGCAATCTCAGAGCGATCGACGTTTACAGCAGCCCAACATCTCCATCAATTTACAAAAGTAAACTCAAGCGATCTCCACACCAACGTATATTATAATGGTTTTGTAATATTATATTGTAATATCGACCGATC

>TRINITY_DN43939_c2_g2_i1 from sample A7 / Example unspliced isoform:

ACTCTCTCTATATAAAATAAAATAAAAGGCCATATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAA
TGAACTCGTAGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCC
AGAAGCTTGTAGTTTCAAATGCATTAAGATGAAGAGTTAGAAAAGgtggattggacaattcagagggaaaatctaattttaaataacttctttatccagttagaaaagactcccaaaattttccaagagtcgccactctacagaatatttcgtttaactcaatttaacattgcatattagtactttcaaagcaatttatt
gcaaaagggctcctcaactccataatttttgcctaagatttcaaactttttctgggtattttatgattatgttaattcctaaccctaacttatttccttttatttgaatattttagATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGG
TTTACATATGTTTTCTGAAAGGTATGTTGTGACTTAGTTTTAACTTTTAATACAATTATTATTTCTTATTTCAAGATGAAGATATTCATGCATGCTATGCAAACAATGTCGTTATTTCTTAGCAGGATCACTAATACTAATTAGTTGATTGGCGAGAGAAATATGAATCATCCAGCATTACTATGGTAGCATGAAAGTAT
ATAGCATGCATTTATTGTTAGATATGCACAATATCTATGAAGAAAATGTTATGTAACATGTATTTGTTAACAGATATGCACATTATATATGAAGAAAATATTGCCATCCACACTTGCTGGAAAGTATGCGAGTATAACAGTTGTTTCATCCTTCTGGGATTGGAGAGTTTACTTTTTTCGACAGTTTACTGGAGTATAAT
TTTGAAATTTTATATAGAAAGATGTATATGTGC

Intron 2 GTTTATTTTG ... ATTTCTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	14.88	163	12	45
A2	13.22	233	14	57
A3	12.57	219	19	44
A4	12.31	171	13	35
A5	12.74	113	6	27
A6	11.78	2227	130	465
A7	12.92	1682	155	344
A8	13.81	1214	102	287
A9	11.91	1660	137	312
A10	13.54	1175	110	258

>TRINITY_DN43939_c2_g2_i2 from sample A7 / Example spliced isoform

ACTCTCTCTATATAAAATAAAATAAAAGGCCATATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAA
TGAACTCGTAGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGCGCAATAATCATCCGACGATTTCAGAGTATGAACTAAGTGGTACAGAGTCCCTGGGAAGTTGCTTTTGTGGGCC
ACAACTTGTAATTTCAAATGCATTAATATGCGGTCAGAAAAGGTGGATTGGACAATTCAGAGGGAAAAATCTGACTTTTTAAACCAGTCATGATGTGCTCCCAAATTTTCTAAGAGTCACCCCTTTTTGCCACTCTTCAGAATTTTGTGTTGAACTCAATTTAGCATTGCAAATTAGTACTTTTACGTTGAAGAAATTAT
TGCAAAAGGGAGGCACCTCCATAATTTTTGCCTGAAAGTTCAATTCTTTTCAGGGTATTTTGTGATTATGTTAATCTCTAACCCTATCTTCTTTCCTTCTAGTTGGATTGTTTATTTGAATATTTTAGCTATCCCAATTGCCTCCAGCTGTGGAAATATTTTGCTTGATTTCCACACTGCCTGGAAGATCATATTTTTTC
CATGTTTGGGTTTACATATGTTTTCTTTAAAGGTACGTTGTGACTTGGTTTTAATACAATGATTTTATATTTTGTTTCAAGATTGAAGAGATTCATGCATGCCATGTAAGAAATGCAGTTATTCCTTTGCAGAAATACAATACTGATTTTTAGTTGATTGTCGA

>TRINITY_DN43939_c2_g2_i5 from sample A7 / Example unspliced isoform:

ACTCTCTCTATATAAAATAAAATAAAAGGCCATATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGgtttattttggacaattgtacatctc
aacttccccagccatttcttcagCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGCGCAATAATCATCCGACGATTTCAG
AGTATGAACTAAGTGGTACAGAGTCCCTGGGAAGTTGCTTTTGTGGGCCACAACTTGTAATTTCAAATGCATTAATATGCGGTCAGAAAAGGTGGATTGGACAATTCAGAGGGAAAAATCTGACTTTTTAAACCAGTCATGATGTGCTCCCAAATTTTCTAAGAGTCACCCCTTTTTGCCACTCTTCAGAATTTTGTGTT
GAACTCAATTTAGCATTGCAAATTAGTACTTTTACGTTGAAGAAATTATTGCAAAAGGGAGGCACCTCCATAATTTTTGCCTGAAAGTTCAATTCTTTTCAGGGTATTTTGTGATTATGTTAATCTCTAACCCTATCTTCTTTCCTTCTAGTTGGATTGTTTATTTGAATATTTTAGCTATCCCAATTGCCTCCAGCTGT
GGAAATATTTTGCTTGATTTCCACACTGCCTGGAAGATCATATTTTTTCCATGTTTGGGTTTACATATGTTTTCTTTAAAGGTACGTTGTGACTTGGTTTTAATACAATGATTTTATATTTTGTTTCAAGATTGAAGAGATTCATGCATGCCATGTAAGAAATGCAGTTATTCCTTTGCAGAAATACAATACTGATTTTT
AGTTGATTGTCGA