sp|Q9SVA5|PP357_ARATH ----> Pentatricopeptide repeat-containing protein At4g39530

Intron 1 GTAAGCTGCT ... GTTATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60	9	15	12
A2	90.91	1	4	16
A3	66.67	7	14	14
A4	67.74	5	10	11
A5	51.72	7	5	10
A6	-1	0	0	0
A7	-1	0	0	0
A8	-1	0	0	0
A9	-1	0	0	0
A10	44.44	10	7	9

>TRINITY_DN114872_c5_g4_i2 from sample A1 / Example spliced isoform

GGAAGAGGGAAGTGTGAGAAGTGTGGCATGTCACTTTTATCATTGCGATTAGGGTTCATTTGCAAAAACCATCTATGTGTGAAGGGGGTGTGGCATGTCACTTTCATCATTGTGAGTAGGGTTTACTGTTTGTACCCAATGGATTCCGTGATTCACCTCTATCATCGAAAACAAGCCACCCCATGGATGAAGAGGCTGTT
TCCCGGGACTCACATCTATCCTCGAACACAGGCTCTACCTCAAATTCGGAGCAACAATCCCACTCTTTGGATTCAATCGCTCAACTTCGACGCTGCTTACCATTCCATTGCACATCGTAAGATTGAATTATGTTTTCAATACAGATACAAGCATCCCTTCAGAGTAACAAAACCACTTCGTTATAGGGGGGTGACAAAGC
TAAGGAAAACCGATAGCAAAACCAGAAGGTAGCAAGAAAGCCAACGAGGAATTATATGGTTTTCATTTATGTGACATTTTACTCCGAGTGTGCATCAATATGAAATCTCTCTCGGAGGGCAAAAGGGTTCACTCCCACATTGTCAAAAGCAATTTCAAGGAACACGTATTTTTCCAAAACAATCTTATTAATATGTATGG
CAAATGTGGGAGTGTTGAGAATGCGCGCAAAGTGTTCGATAAAATGCATGAACGAAATGTCTATTCTTGGACGCTGATGATCGGCGAATATGTTCACCACGGACATTGTGAGGAAGCCCTGAAACTCTTTTCCCAATTGAAACAAGAACCAGGCATGGAGTTGAGTCAGTTCACTGTAGTTAGTGTGGTTCGGGCTTGTG
CTAAAATAACAGGGTCACAATTTGGTAAGTTGGTTCATGCCCATGTAATAAAAACTGGGTTTCAGTCAGAGGTAATCGTCGGAACCACCCTTGTTGATATGTACGCTAAAACTGGGAGTAAAGAGGATGCACGCAAAGTATTTGACAAAATGCCCGAGAAAAACGTGTTTTCGTGGACTGCGGTAATTTCAGAATATGCC
AAGCATGGACATGGGGAAGAGGTGTTTAAGTTATTTAAAGGATTACTATTTGCAGGAGTGAAGCCAAATCACTTTACTTTTTCCAGCGTTCTTAGTGTAGGTTCAATGTTAGATTCTTTGGAACAAGGCATGCAGGTTCATGCACAAATAATCAAAACTGGCTTTGATTCATATCTCTATGTGGGGAATGCTCTTGTTGA
CATGTATGCAAAATGGGGTAGCATGGCAGATGCAAACACCGTGTTTGACTATATGCCT

>TRINITY_DN114872_c5_g4_i1 from sample A1 / Example unspliced isoform:

GGAAGAGGGAAGTGTGAGAAGTGTGGCATGTCACTTTTATCATTGCGATTAGGGTTCATTTGCAAAAACCATCTATGTGTGAAGGGGGTGTGGCATGTCACTTTCATCATTGTGAGTAGGGTTTACTGTTTGTACCCAATGGATTCCGTGATTCACCTCTATCATCGAAAACAAGCCACCCCATGGATGAAGAGGCTGTT
TCCCGGGACTCACATCTATCCTCGAACACAGGCTCTACCTCAAATTCGGAGCAACAATCCCACTCTTTGGATTCAATCGCTCAACTTCGACGCTGCTTACCATTCCATTGCACATCGTAAGATTGAATTATGTTTTCAATACAGATACAAGCATCCCTTCAGAGTAACAAAACCACTTCGTTATAGGGGGGTGACAAAGC
TgtaagctgcttctttcgtttatgtattgtttctacgtcaatgaagcatagaatccaattctcgtgtgttattccagtaattcaacaacagtatacatgaacccattttccaaagtcggtggttctcaagtatgtaaccaaatgcgcttgtattgtgggtatcaatggcttactctttctacatctgttattgcagAAGG
AAAACCGATAGCAAAACCAGAAGGTAGCAAGAAAGCCAACGAGGAATTATATGGTTTTCATTTATGTGACATTTTACTCCGAGTGTGCATCAATATGAAATCTCTCTCGGAGGGCAAAAGGGTTCACTCCCACATTGTCAAAAGCAATTTCAAGGAACACGTATTTTTCCAAAACAATCTTATTAATATGTATGGCAAAT
GTGGGAGTGTTGAGAATGCGCGCAAAGTGTTCGATAAAATGCATGAACGAAATGTCTATTCTTGGACGCTGATGATCGGCGAATATGTTCACCACGGACATTGTGAGGAAGCCCTGAAACTCTTTTCCCAATTGAAACAAGAACCAGGCATGGAGTTGAGTCAGTTCACTGTAGTTAGTGTGGTTCGGGCTTGTGCTAAA
ATAACAGGGTCACAATTTGGTAAGTTGGTTCATGCCCATGTAATAAAAACTGGGTTTCAGTCAGAGGTAATCGTCGGAACCACCCTTGTTGATATGTACGCTAAAACTGGGAGTAAAGAGGATGCACGCAAAGTATTTGACAAAATGCCCGAGAAAAACGTGTTTTCGTGGACTGCGGTAATTTCAGAATATGCCAAGCA
TGGACATGGGGAAGAGGTGTTTAAGTTATTTAAAGGATTACTATTTGCAGGAGTGAAGCCAAATCACTTTACTTTTTCCAGCGTTCTTAGTGTAGGTTCAATGTTAGATTCTTTGGAACAAGGCATGCAGGTTCATGCACAAATAATCAAAACTGGCTTTGATTCATATCTCTATGTGGGGAATGCTCTTGTTGACATGT
ATGCAAAATGGGGTAGCATGGCAGATGCAAACACCGTGTTTGACTATATGCCT

Intron 2 GTAAGATTGA ... GTTATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	76.45	4.7	17	12
A2	62	9	13	16
A3	53.59	14.7	19	14
A4	63.78	6.3	11	11
A5	48.65	10.3	9	10
A6	46.67	1.3	1	0
A7	0	2	0	0
A8	50	1	2	0
A9	24.44	1.7	1	0
A10	63.63	4	1	9

>TRINITY_DN114872_c5_g4_i3 from sample A1 / Example spliced isoform

GGAAGAGGGAAGTGTGAGAAGTGTGGCATGTCACTTTTATCATTGCGATTAGGGTTCATTTGCAAAAACCATCTATGTGTGAAGGGGGTGTGGCATGTCACTTTCATCATTGTGAGTAGGGTTTACTGTTTGTACCCAATGGATTCCGTGATTCACCTCTATCATCGAAAACAAGCCACCCCATGGATGAAGAGGCTGTT
TCCCGGGACTCACATCTATCCTCGAACACAGGCTCTACCTCAAATTCGGAGCAACAATCCCACTCTTTGGATTCAATCGCTCAACTTCGACGCTGCTTACCATTCCATTGCACATCAAGGAAAACCGATAGCAAAACCAGAAGGTAGCAAGAAAGCCAACGAGGAATTATATGGTTTTCATTTATGTGACATTTTACTCC
GAGTGTGCATCAATATGAAATCTCTCTCGGAGGGCAAAAGGGTTCACTCCCACATTGTCAAAAGCAATTTCAAGGAACACGTATTTTTCCAAAACAATCTTATTAATATGTATGGCAAATGTGGGAGTGTTGAGAATGCGCGCAAAGTGTTCGATAAAATGCATGAACGAAATGTCTATTCTTGGACGCTGATGATCGGC
GAATATGTTCACCACGGACATTGTGAGGAAGCCCTGAAACTCTTTTCCCAATTGAAACAAGAACCAGGCATGGAGTTGAGTCAGTTCACTGTAGTTAGTGTGGTTCGGGCTTGTGCTAAAATAACAGGGTCACAATTTGGTAAGTTGGTTCATGCCCATGTAATAAAAACTGGGTTTCAGTCAGAGGTAATCGTCGGAAC
CACCCTTGTTGATATGTACGCTAAAACTGGGAGTAAAGAGGATGCACGCAAAGTATTTGACAAAATGCCCGAGAAAAACGTGTTTTCGTGGACTGCGGTAATTTCAGAATATGCCAAGCATGGACATGGGGAAGAGGTGTTTAAGTTATTTAAAGGATTACTATTTGCAGGAGTGAAGCCAAATCACTTTACTTTTTCCA
GCGTTCTTAGTGTAGGTTCAATGTTAGATTCTTTGGAACAAGGCATGCAGGTTCATGCACAAATAATCAAAACTGGCTTTGATTCATATCTCTATGTGGGGAATGCTCTTGTTGACATGTATGCAAAATGGGGTAGCATGGCAGATGCAAACACCGTGTTTGACTATATGCCT

>TRINITY_DN114872_c5_g4_i1 from sample A1 / Example unspliced isoform:

GGAAGAGGGAAGTGTGAGAAGTGTGGCATGTCACTTTTATCATTGCGATTAGGGTTCATTTGCAAAAACCATCTATGTGTGAAGGGGGTGTGGCATGTCACTTTCATCATTGTGAGTAGGGTTTACTGTTTGTACCCAATGGATTCCGTGATTCACCTCTATCATCGAAAACAAGCCACCCCATGGATGAAGAGGCTGTT
TCCCGGGACTCACATCTATCCTCGAACACAGGCTCTACCTCAAATTCGGAGCAACAATCCCACTCTTTGGATTCAATCGCTCAACTTCGACGCTGCTTACCATTCCATTGCACATCgtaagattgaattatgttttcaatacagatacaagcatcccttcagagtaacaaaaccacttcgttataggggggtgacaaagc
tgtaagctgcttctttcgtttatgtattgtttctacgtcaatgaagcatagaatccaattctcgtgtgttattccagtaattcaacaacagtatacatgaacccattttccaaagtcggtggttctcaagtatgtaaccaaatgcgcttgtattgtgggtatcaatggcttactctttctacatctgttattgcagAAGG
AAAACCGATAGCAAAACCAGAAGGTAGCAAGAAAGCCAACGAGGAATTATATGGTTTTCATTTATGTGACATTTTACTCCGAGTGTGCATCAATATGAAATCTCTCTCGGAGGGCAAAAGGGTTCACTCCCACATTGTCAAAAGCAATTTCAAGGAACACGTATTTTTCCAAAACAATCTTATTAATATGTATGGCAAAT
GTGGGAGTGTTGAGAATGCGCGCAAAGTGTTCGATAAAATGCATGAACGAAATGTCTATTCTTGGACGCTGATGATCGGCGAATATGTTCACCACGGACATTGTGAGGAAGCCCTGAAACTCTTTTCCCAATTGAAACAAGAACCAGGCATGGAGTTGAGTCAGTTCACTGTAGTTAGTGTGGTTCGGGCTTGTGCTAAA
ATAACAGGGTCACAATTTGGTAAGTTGGTTCATGCCCATGTAATAAAAACTGGGTTTCAGTCAGAGGTAATCGTCGGAACCACCCTTGTTGATATGTACGCTAAAACTGGGAGTAAAGAGGATGCACGCAAAGTATTTGACAAAATGCCCGAGAAAAACGTGTTTTCGTGGACTGCGGTAATTTCAGAATATGCCAAGCA
TGGACATGGGGAAGAGGTGTTTAAGTTATTTAAAGGATTACTATTTGCAGGAGTGAAGCCAAATCACTTTACTTTTTCCAGCGTTCTTAGTGTAGGTTCAATGTTAGATTCTTTGGAACAAGGCATGCAGGTTCATGCACAAATAATCAAAACTGGCTTTGATTCATATCTCTATGTGGGGAATGCTCTTGTTGACATGT
ATGCAAAATGGGGTAGCATGGCAGATGCAAACACCGTGTTTGACTATATGCCT