sp|Q69JW2|NRP2_ORYSJ ----> NAP1-related protein 2
Intron 1 GTTGACTTTC ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.23 | 52 | 35 | 26 |
| A2 | 42.19 | 37 | 27 | 7 |
| A3 | 42.35 | 49 | 36 | 12 |
| A4 | 49.15 | 30 | 29 | 10 |
| A5 | 50 | 6 | 6 | 0 |
| A6 | 44.58 | 96 | 77.2 | 16 |
| A7 | 47.29 | 135.8 | 121.8 | 9 |
| A8 | 46.07 | 104.4 | 89.2 | 17 |
| A9 | 46.86 | 127 | 112 | 25 |
| A10 | 46.46 | 157 | 136.2 | 21 |
>TRINITY_DN108661_c6_g2_i2 from sample A2 / Example spliced isoformCAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGGTCTTGGATGTGGAGGCTTAGATATGTGTCAGACTAGCAGTTTTATGGCATTTTCAGGTGGTTTTCATCTCTAAGGGAGA
GCTTTTAATGGTGTATTCCAGATGTTGATGAAGTCATAGTGTCCCCAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTACTTTTACATTTCGTCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGAT
ATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGTGCGACCCAGCTGAAGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGA
GGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCT
AGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATT
CTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAGAAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTT
TGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGTTCCCATTATTTGCGATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGC
CTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
>TRINITY_DN108661_c6_g2_i1 from sample A2 / Example unspliced isoform:CAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGgttgactttcttcttaatacttatgacgatgccatagaccacgatttctatgcttttggaggttgaatcaatgggctttt
tgcagGTCTTGGATGTGGAGGCTTAGATATGTGTCAGACTAGCAGTTTTATGGCATTTTCAGGTGGTTTTCATCTCTAAGGGAGAGCTTTTAATGGTGTATTCCAGATGTTGATGAAGTCATAGTGTCCCCAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTA
CTTTTACATTTCGTCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGT
GCGACCCAGCTGAAGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGA
AGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTT
ATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGC
TATGTTAATGGAGAAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTTTGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGT
TCCCATTATTTGCGATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGCCTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
Intron 2 GTTGACTTTC ... GTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.84 | 77.2 | 35 | 16 |
| A2 | 30.3 | 46 | 27 | 13 |
| A3 | 26.09 | 68 | 36 | 12 |
| A4 | 30.68 | 46.3 | 29 | 12 |
| A5 | 19.23 | 21 | 6 | 4 |
| A6 | 25.95 | 174.7 | 77.3 | 45 |
| A7 | 26.31 | 239 | 121.7 | 49 |
| A8 | 25.88 | 189.5 | 89.3 | 43 |
| A9 | 28.99 | 205.8 | 112 | 56 |
| A10 | 28.87 | 233.2 | 136.3 | 53 |
>TRINITY_DN108661_c6_g2_i3 from sample A2 / Example spliced isoformCAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTACTTTTACATTTCG
TCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGTGCGACCCAGCTGA
AGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTT
GATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGA
TGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAG
AAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTTTGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGTTCCCATTATTTGC
GATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGCCTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
>TRINITY_DN108661_c6_g2_i1 from sample A2 / Example unspliced isoform:CAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGgttgactttcttcttaatacttatgacgatgccatagaccacgatttctatgcttttggaggttgaatcaatgggctttt
tgcaggtcttggatgtggaggcttagatatgtgtcagactagcagttttatggcattttcaggtggttttcatctctaagggagagcttttaatggtgtattccagatgttgatgaagtcatagtgtccccagGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTA
CTTTTACATTTCGTCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGT
GCGACCCAGCTGAAGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGA
AGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTT
ATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGC
TATGTTAATGGAGAAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTTTGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGT
TCCCATTATTTGCGATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGCCTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
Intron 3 GTATGTAATT ... TCTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.84 | 103.3 | 52 | 7 |
| A2 | 33.67 | 67.3 | 34 | 2 |
| A3 | 34.25 | 102.7 | 53 | 1 |
| A4 | 35.69 | 70.7 | 39 | 3 |
| A5 | 45.07 | 40.7 | 33 | 3 |
| A6 | 28.12 | 208 | 80 | 0 |
| A7 | 27.63 | 324 | 122 | 0 |
| A8 | 25.85 | 228.7 | 78 | 1 |
| A9 | 30.12 | 286 | 122 | 0 |
| A10 | 28.86 | 335.7 | 135 | 1 |
>TRINITY_DN103181_c3_g1_i2 from sample A5 / Example spliced isoformAAAAAACAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGT
TGAAGTTGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTAC
AATGAGATACGACGTCCGGCTTATGAAAAGCGAAATTCTACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGA
TTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAA
GTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAAT
TATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAGA
>TRINITY_DN103181_c3_g1_i3 from sample A5 / Example unspliced isoform:AAAAAACAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGT
TGAAGTTGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTAC
AATGAGATACGACGTCCGGCTTATGAAAAGCGAAATTCTACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGgtatgtaatttacgcatttttctaccaggggagatttctctgccatgtcgattgagggtcctggttccgaactcatatataactaagacactagtatcaatttgcttaggggctttggaaatggc
tatatttaaaacttaagtggttaaatttggtcttgggattatatgggtattgataagtctgacgttggtgtcttggtctattacagTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGGTGCGTTTTACTTTGTGTTCGGGTCTCTCTCTCTCTTCCCCACTCACACA
Intron 4 GTCTTGGATG ... GTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.58 | 77.2 | 52 | 16 |
| A2 | 35.21 | 46 | 37 | 13 |
| A3 | 30.96 | 68 | 49 | 12 |
| A4 | 31.19 | 46.3 | 30 | 12 |
| A5 | 19.23 | 21 | 6 | 4 |
| A6 | 28.77 | 174.7 | 96 | 45 |
| A7 | 27.86 | 239 | 135.7 | 49 |
| A8 | 27.9 | 189.5 | 104 | 42.7 |
| A9 | 30.78 | 205.8 | 127 | 56 |
| A10 | 31.05 | 233.2 | 157 | 53 |
>TRINITY_DN108661_c6_g2_i3 from sample A2 / Example spliced isoformCAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTACTTTTACATTTCG
TCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGTGCGACCCAGCTGA
AGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTT
GATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGA
TGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAG
AAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTTTGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGTTCCCATTATTTGC
GATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGCCTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
>TRINITY_DN108661_c6_g2_i2 from sample A2 / Example unspliced isoform:CAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGT
TGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAG
ATACGACGTCCGGCTTATGAAAAGCGAAATTCGACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGgtcttggatgtggaggcttagatatgtgtcagactagcagttttatggcattttcaggtggttttcatctctaagggaga
gcttttaatggtgtattccagatgttgatgaagtcatagtgtccccagGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTACTTTTACATTTCGTCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGAT
ATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGTGCGACCCAGCTGAAGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGA
GGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCT
AGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATT
CTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAGAAATAGTTTTAACTGTTCATACTGGGCAACTTAAAGAGCAACGCAAACTAGTGAAACTAATGGTTATGAGTT
TGGTAGTGTTAGTTTTCTCAACATAAGAACTAGTTTATTTGATGGCTTGCTAAATGTAATTCAAAACAATTCCACTTTTGAAACAGAAACTTGTCATTGGCCGTGTTGAAATTGTTCCCATTATTTGCGATCATGTAATCTCCTTGGTGTTCACGAAGGATAGTGTTGTTATCACCCGTGTCTCGTGATAGATGTAGGGC
CTCCAGTAAATGCTCATTGGTAAGGATGCATATATTTGTGTTGACTAGAAAGCACA
Intron 5 GTTTTTAAGT ... ACATGATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.32 | 51 | 77 | 60 |
| A2 | 60 | 46 | 46 | 92 |
| A3 | 58.57 | 52 | 68 | 79 |
| A4 | 57.97 | 29 | 46 | 34 |
| A5 | 57.28 | 22 | 21 | 38 |
| A6 | 65.06 | 152 | 171 | 395 |
| A7 | 61.29 | 216 | 239 | 445 |
| A8 | 62.9 | 192 | 189 | 462 |
| A9 | 61.73 | 190 | 206 | 407 |
| A10 | 60.91 | 197 | 233 | 381 |
>TRINITY_DN103181_c3_g1_i2 from sample A5 / Example spliced isoformAAAAAACAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGT
TGAAGTTGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTAC
AATGAGATACGACGTCCGGCTTATGAAAAGCGAAATTCTACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGA
TTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAA
GTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAAT
TATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAGA
>TRINITY_DN103181_c3_g1_i8 from sample A5 / Example unspliced isoform:AAAAAACAAAAACAGGTCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGT
TGAAGTTGGACGAAGAGGAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTAC
AATGAGATACGACGTCCGGCTTATGAAAAGCGAAATTCTACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGgtttttaagtatttgcaatcccttgatgttgaagattttaaggatgtgaagtctgggtaccgcattacttttac
atttcgtcccaatccttattttgagaatactgaattggtgaaagtattccggttttctgatgaggttaccacatcgatatcaggctctactgtaaaatggaaagaaggcatggactttacaaatggggttggcccagacaaagaggggaggaaacggccgcttcaagaagaaagttttttcaattggttcagtgcgaccc
agctgaaggattcttctggtggaatacatgatgagATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGATGAAGAGCCTGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGAT
GAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGG
GTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTA
ATGGAGA
Intron 6 GTAAGTGCTG ... GCTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.09 | 45.7 | 2 | 8 |
| A2 | 14.25 | 36.7 | 1 | 6 |
| A3 | 21.4 | 45.3 | 0 | 12 |
| A4 | 31.06 | 34 | 6 | 15 |
| A5 | 18.41 | 10.3 | 3 | 2 |
| A6 | 20.25 | 112.7 | 0 | 28 |
| A7 | 23 | 157.3 | 0 | 46 |
| A8 | 23.82 | 143 | 0 | 44 |
| A9 | 19.89 | 166.7 | 0 | 41 |
| A10 | 26.22 | 124 | 0 | 44 |
>TRINITY_DN101162_c0_g1_i3 from sample A4 / Example spliced isoformCGGCGGGTATGCCAAGGGTTTAGGGGAATTTAAGGGTTTTGTGGCTGAATCTGCTGTGCATCTAGTGGCGTTCGAGTTTGCACCCCAATCAGAATCACAGGGCATGGCAGACCACCTGTCAAGGTGTTAATTGACCCTTCCACAACTGAAGCCCTGCCCTGCCAAAAATAGAGGAATTGGAGTTGAAGTTGGACGAAGAG
GAGGAGCTGAGCCTGAGCCTGAGCTTGAGCATGGCGGACAAAGGCAAGAAGGGGAGTGTGGGCGACGATCATCTAGACAAAGACCTCATACTCGCCATCGAAAAGCTACAGGAAATTCAGGACGAGCTTGAGAAAGTTAACGAGGAAGCAAGCGACAGAGTGTTGGAGGTGGAACAGAAGTACAATGAGATACGACGTCC
GGCTTATGAAAAGCGAAATTCTACCATTCAAGCAATTCCTGATTTTTGGCTCACCGCGTTTTTAAGCCATCCGGCATTGATTGATTTCCTGACTGAAGAAGATCAGAAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTCTGGGTACCGCATTACTTTTACATTTCGTCCCAATCCTT
ATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTTTTTTCAATTGGTTCAGTGCGACCCAGCTGAAGGATTCTTCT
GGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGAAGAGCCCGGTAAGGGTAATGAAGGCACTGATGAAGATGATGAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGA
TTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCATGCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTAT
CGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAGAAAACCATTTAAGCTATGTTAATGGAGAAAT
>TRINITY_DN101162_c0_g1_i6 from sample A4 / Example unspliced isoform:ATTTTCATATGTTTTTTGCCTCTGATAGGGAATGCAACTTTATGTCTTTATGGTAGGGTGCATCAGCTAACTCAGAAGTAAACTTGTCATATTGAAAGCCTATTTCTGTTACTGAAGCTAATGTATTTTCTTAGTATGTTTCTGTAGGTTTTTAAGTATTTGCAATCCCTTGATGTTGAAGATTTTAAGGATGTGAAGTC
TGGGTACCGCATTACTTTTgtaagtgctgatatcttcctctgaatgaatgttgcaaaatttgaaaactatatgatatacattgtgaataatgtgttggaaatggtctgttttgctatagatttctgacacaaattcaggtattgacatgcttgtttcaaacctttgatttctgacacaaactcaggtattgacattaatg
gcactgcataatgctttttcagACATTTCGTCCCAATCCTTATTTTGAGAATACTGAATTGGTGAAAGTATTCCGGTTTTCTGATGAGGTTACCACATCGATATCAGGCTCTACTGTAAAATGGAAAGAAGGCATGGACTTTACAAATGGGGTTGGCCCAGACAAAGAGGGGAGGAAACGGCCGCTTCAAGAAGAAAGTT
TTTTCAATTGGTTCAGTGCGACCCAGCTGAAGGATTCTTCTGGTGGAATACATGATGAGATAGCTGAGATAATTAAAGAAGATTTGTGGCCCAATCCCCTGAGGTATTTCAACAATGAAGCAGATGGAGAAGATTACGGGGATGATGATGATGATGATGAAGAGCCCGGTAAGGGTAATGAAGGCACTGATGAAGATGAT
GAAGAGCAAGACGAAGATGATGAAGTTGATGATGCCTGAGATTCCTTGCTATTTTCTTTATGTGCTTTAGTTTGTTATAATGAGAGATCAAGCAATCCTAGTTGTATAGGTATTCTTAGTTTAGGTAGAAGTCATAATTATTTATGTTTTAATAGCAAGGAAATAACCGTGTCAACAGGCCAGGAAAATCTTTGTTCCAT
GCCCAAGAGGTCTTATGCTGGGTTAGATGTACAACCTTTATCGACGAAGAACATAACCTGTCTACAGTGAAAGTGTTCAGAATGTAATGAAGGCTAATTCTGACATATTCCTCAAAATAGTTTGTTGAATTATTGAGAGCTGTAACGGTCCTAACTAATGTACCATTTTGGAGAACTACCGGGTTGCATAATGCATTTAG
AAAACCATTTAAGCTATGTTAATGGAGAAAT