sp|F4ITM1|RGSL1_ARATH ----> E3 ubiquitin-protein ligase RSL1
Intron 1 GTATGTTATT ... ATGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 4 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 50 | 0 | 0.5 | 0 |
| A4 | 42.86 | 4 | 2 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 48.72 | 6 | 5.5 | 6 |
| A8 | 32.29 | 11 | 2.5 | 8 |
| A9 | 50 | 4 | 3 | 5 |
| A10 | 41.66 | 4 | 4 | 2 |
>TRINITY_DN44692_c0_g1_i3 from sample A7 / Example spliced isoformGTCTGTCCACATAAAATGGTCATACGCGGCTTATAAGTCGGTGGGCTGGCTTTTATACCTATCCTCTGCTATATATATATAAATTTTTACAGTGTGCAGGCTCTGTTTTTTGTGATTTATGGAAATGGAGTCTGAATTGCTGCACTAAATCTGGAAGTACTGTGTTTGGTGGTTTGGGATCCAAAATCCGAGACGAAGAA
GTCGAAAGAGAAAAACCCCATTCCGCCTCTTAGAGATTGGAATTTATAAATTCAATCTTCTTTGTGATAATTAGTGAAGCAAGGATGGAGAATTTGGACTCGGATAAAAAATCCCTTCAAGCACGCAGCAGTGACGACCATGAAACCAGTGACAATACCAATGTTGACGTCGGTTGCAACCGAGGGACTCAGATAAAAGG
GGAATCCGCTGGATATCAAAGAGGTCAATGTGAATCAAATGCACGAAAATATCGTTTGCCATCATAGATACTGTTTTTCTTGTATGGCTCGAACCGTTGAGCTCCATTTGATTACATATCACGGTGTGCCTCGGTGCCCAACTCTCGATTGTCGTTCCCAACTCACTAAAAGTGATTGTGAAAAATTCTTGTCGTCCAAA
CGGCTTCATTTTTTTATAGAAAGATTGGCAGAGGCAGCAATTCCAGAAGCAGAGAAAGTATTTTGACCCTATTCTAACTGCTCGGCTTTGATGGCTCTATCAACATTAGAAAGATTCCCACAATCTCCCTCTCCTTCTTCCTCATCGAATCCTTTTCCAACAACAACGTCAAGAAAATGCTAGAAATGCAATCGATTGTT
TTGTATAGAATGCAGTGTTGCTTGGCACAAGGACATGACATGTCACGACTATTCTTCTCAGTTGTGTGGTGTAGATGCAGAGTTCAAATTGCTAGCAGAGAATAACGGGTGGAAACAGTGTCCGCAATGCAAACACATGATTGAACGTTCTGAAGGTTGTGTCCACATTACTTGCAGACGGTGGCCGTCGAGAATGAAAG
AATCTCTGTACCATCACCTCTGATTCAGTTGCCTAGAACCTAAGCTGCGGGAATAGATAAGGACTGTGTGTGAACCCAACTGAACTCAATTATATTTCAATTATATTTGTAAGAATCCTATGAATCTGAACGCAGATTTAATATCTGTTATATTTATATAAGGGCCCTTGATACTAATAGAATCGGTCCATAGAAATATT
CAAGCTGATTGTAATACAAAACATAGCCCTCTGACTTTGAACATTAATTAGATCAATTTATCTTTTATTTAGACCAAGTTTCGATTATTAATTATAATTTATAACCCAATTTTAAAATCTCTGAATCAATCTCTTTAAATTTATGATATATTTAGTTTATGTTTTCTTTAAACCATTTAAATTTATGATACATGTAGTTT
ATGTTTTCTTGAAACCATTTATAT
>TRINITY_DN44692_c0_g1_i2 from sample A7 / Example unspliced isoform:GTCTGTCCACATAAAATGGTCATACGCGGCTTATAAGTCGGTGGGCTGGCTTTTATACCTATCCTCTGCTATATATATATAAATTTTTACAGTGTGCAGGCTCTGTTTTTTGTGATTTATGGAAATGGAGTCTGAATTGCTGCACTAAATCTGGAAGTACTGTGTTTGGTGGTTTGGGATCCAAAATCCGAGACGAAGAA
GTCGAAAGAGAAAAACCCCATTCCGCCTCTTAGAGATTGGAATTTATAAATTCAATCTTCTTTGTGATAATTAGTGAAGCAAGGATGGAGAATTTGGACTCGGATAAAAAATCCCTTCAAGCACGCAGCAGTGACGACCATGAAACCAGTGACAATACCAATGTTGACGTCGGTTGCAACCGAGGGACTCAGATAAAAGG
GGAATCCGCTGGATATCAAAGAGGTCAATGTGAATCAAATGCACGAAAATATCGTTTGCCATCATAGATACTGTTTTTCTTGTATGGCTCGAACCGTTGAGCTCCATTTGATTACATATCACGGTGTGCCTCGGTGCCCAACTCTCGATTGTCGTTCCCAACTCACTAAAAGTGATTGTGAAAAATTCTTGTCGTCCAAA
CGGCTTCATTTTTTTATAGAAAGATTGGCAGAGGCAGCAATTCCAGAAGCAGAGAAAGTATTTTGACCCTATTCTAACTGCTCGGCTTTGATGGCTCTATCAACATTAGAAAGATTCCCACAATCTCCCTCTCCTTCTTCCTCATCGAATCCTTTTCCAACAACAACGTCAAGAAAATGCTAGAAATGCAATCGATTGTT
TTGTATAGAATGCAGTGTTGCTTGGCACAAGGACATGACATGTCACGACTATTCTTCTCAGTTGTGTGGTGTAGATGCAGAGTTCAAATTGCTAGCAGAGAATAACGGGTGGAAACAGTGTCCGCAATGCAAACACATGATTGAACGTTCTGAAGGTTGTGTCCACATTACTTGCAGACGGTGGCCGTCGAGAATGAAAG
AATCTCTGTACCATCACCTCTGATTCAGTTGCCTAGAACCTAAGCTGCGGGAATAGATAAgtatgttattccaaagtctgtacgtcgattaattaaagaaacgttagcccgtgtaaagaaaattatatatagtatttcttctgtaatcttttaaagttaacaaaggctaggacttacagtgcttacccaatcaggggaga
ctgtctcacatctaagtgatatgaatgcagGGACTGTGTGTGAACCCAACTGAACTCAATTATATTTCAATTATATTTGTAAGAATCCTATGAATCTGAACGCAGATTTAATATCTGTTATATTTATATAAGGGCCCTTGATACTAATAGAATCGGTCCATAGAAATATTCAAGCTGATTGTAATACAAAACATAGCCCT
CTGACTTTGAACATTAATTAGATCAATTTATCTTTTATTTAGACCAAGTTTCGATTATTAATTATAATTTATAACCCAATTTTAAAATCTCTGAATCAATCTCTTTAAATTTATGATATATTTAGTTTATGTTTTCTTTAAACCATTTAAATTTATGATACATGTAGTTTATGTTTTCTTGAAACCATTTATAT
Intron 2 GTGCAGTTAT ... TGCTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 1 |
| A4 | 0 | 2 | 0 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 4 | 2 | 0 |
| A7 | 44.68 | 26 | 21 | 3 |
| A8 | 45.28 | 29 | 24 | 2 |
| A9 | 51.35 | 18 | 19 | 1 |
| A10 | 45 | 22 | 18 | 1 |
>TRINITY_DN42145_c0_g2_i4 from sample A9 / Example spliced isoformATCTGTCGAAGTCTGTCCACATAAAATGGTCATACGCGGCTTATAAGTCGGTGGGCTGGCTTGTATACCTATCCTCTGCTATATATATATAAATTTTTACAGTGTGCAGGCTCTGTTTTTTGTGATTTATGGAAATGGAGTCTGAATTGCTGCACTAAATCTGGAAGTACTGTGTTTGGTGGTTTGGGATCCAAAATCCG
AGACGAAGAAGTCGAAAGAGAAAAACCCCATTCCGCCTCTTAGAGATTGGAATTTATAAATTCAATCTTCTTTGTGATAATTAGTGAAGGAAGGATGGAGAATTTGGACTCGGATAAAAAATCCCTTCAAGCACGCAGCAGTGACGACCATGAAACCAGTGACAATACCAATGTTGACGTCGGTTGCAACCGAGGGACTC
AGATAAAAGGGGAATCCGCTGGATATCAAAGAGGTCAATGTGAATCAAATGCACGAAAATATCGTTTGCCATCATAGATACTGTTTTTCTTGTATGGCTCGAACCGTTGAGCTCCATTTGATTACATATCACGGTGTGCCTCGGTGCCCAACTCTCGATTGTCGTTCCCAACTCACTAAAAGTGATTGTGAAAAATTCTT
GTCGTCCAAACGGCTTCATTTTTTTATAGAAAGATTGGCAGAGGCAGCAATTCCAGAAGCAGAGAAAGTATTTTGACCCTATTCTAACTGCTCGGCTTTGATGGCTCTATCAACATTAGAAAGATTCCCACAATCTCCCTCTCCTTCTTCCTCATCGAATCCTTTTCCAACAACAACGTCAAGAAAATGCTAGAAATGCA
ATCGATTGTTTTGTATAGAATGCAGTGTTGCTTGGCACAAGGACATGACATGTCACGACTATTCTTCTCAGTTGTGTGGTGTAGATGCAGAGTTCAAATTGCTAGCAGAGAATAACGGGTGGAAACAGTGTCCGCAATGCAAACACATGATTGAACGTTCTGAAGGTTGTGTCCACATTACTTGCAGACGGTGGCCGTCG
AGAATGAAAGAATCTCTGTACCATCACCTCTGATTCAGTTGCCTAGAACCTAAGCTGCGGGAATAGATAAGGACTGTGTGTGAACCCAACTGAACTCAATTATATTTCAATTATATTTGTAAGAATCCTATGAATCTGAACGCAGATTTAATATCTGTTATATTTATATAAGGGCCCTTGATACTAATAGAATCGGTCCA
TAGAAATATTCAAGCTGATTGTAATACAAAACATAGCCCTCTGACTTTGAACATTAATTAGATCAATTTATCTTTTATTTAG
>TRINITY_DN42145_c0_g2_i10 from sample A9 / Example unspliced isoform:ATCTGTCGAAGTCTGTCCACATAAAATGGTCATACGCGGCTTATAAGTCGGTGGGCTGGCTTGTATACCTATCCTCTGCTATATATATATAAATTTTTACAGTGTGCAGGCTCTGTTTTTTGTGATTTATGGAAATGGAGTCTGAATTGCTGCACTAAATCTGGAAGTACTGTGTTTGGTGGTTTGGGATCCAAAATCCG
AGACGAAGAAGTCGAAAGAGAAAAACCCCATTCCGCCTCTTAGAGATTGGAATTTATAAATTCAATCTTCTTTGTGATAATTAGTGAAGGAAGGATGGAGAATTTGGACTCGGATAAAAAATCCCTTCAAGCACGCAGCAGTGACGACCATGAAACCAGTGACAATACCAATGTTGACGTCGGTTGCAACCGAGGGACTC
AGATAAAAGGGGAATCCGCTGGATATCAAAGAGGTCAATGTGAATCAAATGCACGAAAATATCGTTTGCCATCATAGATACTGTTTTTCTTGTATGGCTCGAACCGTTGAGCTCCATTTGATTACATATCACGGTGTGCCTCGGTGCCCAACTCTCGATTGTCGTTCCCAACTCACTAAAAGTGATTGTGAAAAATTCTT
GTCGTCCAAACGGCTTCATTTTTTTATAGAAAGATTGGCAGAGGCAGCAATTCCAGAAGCAGAGAAAGTATTTTGACCCTATTCTAACTGCTCGGCTTTGATGGCTCTATCAACATTAGAAAGATTCCCACAATCTCCCTCTCCTTCTTCCTCATCGAATCCTTTTCCAACAACAACGTCAAGAAAATGCTAGAAATGCA
ATCGATTGTTTTGTATAGAATGCAGTGTTGCTTGGCACAAGGACATGACATGTCACGACTATTCTTCTCAGTTGTGTGGTGTAGATGCAGAGTTCAAATTGCTAGCAGAGAATAACGGGTGGAAACAGTGTCCGCAATGCAAACACATGATTGAACGTTCTGAAGGTTGTGTCCACATTACTTGCAGgtgcagttatgaa
ttttgctataaatgtggcattcattggacggataatgaagtgccatgtaattgttacaaggatgatgatgaaaataatgatgttagtgatgatggtgataatgatgcagaagatgatgaaaaacaagaaaaaaataatatattatattcatgatgatggtgatgatgacaagaacaaacaagataaaaataataattata
ttcatgatgatggtgatgatgacaaagaagatgttcataaagatagtgataatgatgttaatgaaaacgaaaaaattgaccaagaaaaaaaaataatgataatgttgatgatgatcataatgattatcagtcagattaagaaaacaaaacaaatatcgaagaaactaataatgatggatgatgagacattgtgatatgta
tagggagaatgttttttattcaaaacattctctaaattctacatcgataacgatgatggcttaaattttttatttgatcagtattgaaaatatatgattcctaatttaaattatgtgttggtgtgcttttctgaaatcgatatatgcttgaaagACGGTGGCCGTCGAGAATGAAAGAATCTCTGTACCATCACCTCTGA
TTCAGTTGCCTAGAACCTAAGCTGCGGGAATAGATAAGTATGTTATTCCAAAGTCTGTACGTCGATTAATTAAAGAAACGTTAGCCCGTGTAAAGAAAATTATATATAGTATTTCTTCTGTAATCTTTTAAAGTTAACAAAGGCTAGGACTTACAGTGCTTACCCAATCAGGGGAGACTGTCTCACATCTAAGTGATATG
AATGCAGGGACTGTGTGTGAACCCAACTGAACTCAATTATATTTCAATTATATTTGTAAGAATCCTATGAATCTGAACGCAGATTTAATATCTGTTATATTTATATAAGGGCCCTTGATACTAATAGAATCGGTCCATAGAAATATTCAAGCTGATTGTAATACAAAACATAGCCCTCTGACTTTGAACATTAATTAGAT
CAATTTATCTTTTATTTAG