sp|Q7XVN7|DJC43_ORYSJ ----> DnaJ protein ERDJ2
Intron 1 GTACGGTCCT ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.4 | 54 | 11 | 15 |
| A2 | 24.32 | 28 | 9 | 9 |
| A3 | 19.3 | 23 | 8 | 3 |
| A4 | 16.88 | 32 | 4 | 9 |
| A5 | 31.25 | 11 | 7 | 3 |
| A6 | 15.45 | 52 | 8 | 11 |
| A7 | 15.86 | 130 | 24 | 25 |
| A8 | 17.06 | 141 | 35 | 23 |
| A9 | 17.5 | 132 | 30 | 26 |
| A10 | 15.79 | 80 | 20 | 10 |
>TRINITY_DN101199_c0_g1_i3 from sample A5 / Example spliced isoformTTTCCTTCTCATTTTGAATTTGATCTTTTCATTGACAATGGGCCACGGAGTTTAAACCCTACTTATTTTAAACTTCAAAATTTGAAACCCAAATGTTGGTTCTGTGCATTTAAAATATTTTCTGGATGCATCAGTGATCATAAAATGGGAGGAGAGAGTGAAAGAAGTAGTCGGAGGAACAGAAAAAAGAGTTCTAGCAG
CAACAGGAAGAGAAGTAAAGATGCGTATACAGAGTCTGATAATTCTACCAGTGACACTGAAGAAGAAATGAAGAACCGGATGAATCGGAGTTACAGAGATAAGAAATATCATAAATCAAGAAAGGCAGAGCGGGTAGTGGAGAGTTCAAGCGAGGGTTCTAGTGAGGAGGATCATCGCAGACGCAAGGACAAGAAAAGGA
GGAAAAAGCAGAAGAGGGAAAGCAAATACAGGAGGAATGGGAGGAGTAAGAGGAGACGCACAGAACGTAGCTCGGATGAAGATTCAGAGTCACCGTCTTCGGCTGATATGGCGGGGGAGGATCAGAATGCAGAGGAAACTCCGGAAAAGATTGCTAAGCTAATTCTGAATAAGTTCCCTTATGTGAAGCAGGAACTGAAA
CAGCTGCTGAAAATGATTGACGATGGACAAGCAATAGACATCCAAGAACTCTCCAACAAAGCTTTCTTGAAGCTTCTTAAGAAGTTGTTTAAATCTTTAAAGCTTAAAAGGACAGGAAGAGGACTTTACATGCTGCCTAGAGGAGGTTGCCCCTGTCTGGAAGCTATAGGTTCTGTCATTGAGTGTGATACTAGTGTTGC
AACTGAAAGTCAATCTGACTATCAAAGAGAGTTTCAGCAAAATGAACAATCTGATCTTCAAGGCAGGGAAACCAATTATAACAATGGAATACCCGATGCCAATCATGTTGAAGTATCTGATCTGAAAGCTGATTCACCTTCATCTACCAAACGCAGGGTAATTGGCCCAGCTATGCCCTCTGCAGAAATGTTGGCAGCTG
CTGCTAAACTGACTGAGGCAGAAGCAGCCTTAAGGGATGCCGAAAAGGAATTGGAGAATGATGTCCTGATAGGACCCCCGCCACCAGCTGCTGTGATTGAAGCAGAATCAGCAAATGATGCGGAGCGCTTTGAAGAGGTGACAAGGATTATTCCTCTCGATGCAAGTAATCCATATGATGTGTTGGGCTTGAATAGAGGT
GCATCAGCTGAGAGCATGAAGAAAAGGTATTGGAAGCTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCATTTACAATATTGAACCAATCTTTCAAAGATTTACAAGACCCAATAAAACGAGCTGCGGTTGATGATAAGATAATAATAAAAGAAGCGAAGGAAGAATTTGAGGCTGACTT
GAAGGCACGTCGTGAAGCTGCACAGTGGAGACGTATACGAGGTGAGGCTATATCAGGTGATGATGAGTTGCTAGCTGAAGTTAAGCTGTCACCCAAACGAGATGAATGGATGACAATGCTCCCACCTGAAAGAAAGCCTGGCCCGAGTATGCATTCAACATTTTTTAGCAAGTCTGATAAACCTGAGCGAGGGGATACAA
GTATTTGGACCGACACTCCATTGGAAAAAGCTCATAAAGCAAAGCAGCATTATTTGGAGGCCTACAATCAAACAGCTCTTACTGCATTGGATAATGATATTGGGTCCCTTGAGAAGGAACATTCTTCCGCTACAGCAGAACTGATGGATAAGTATAACAAGTCTAAGCGTTCCACGTCTCTTGTTGAGAAACATAAACAT
GAACAAAAGAAAAAGTCAAAAAAAGTGGAAAAATCAGAGAAGCAGCAAGATGAAGAATGGTCAGGCAAGCATCCATGGAAACCTTGGGACCGAGAGACTGATTTAACAGCTGGGCGAAAGTCCGTGAATTTTGATGCTAATAGTTTCACAGAAGGGTTAACTTCAAGATTTTCTTCTGGAACTGTGGAGAGGAATTTCTT
GTAAGTCTAGCCTCTGTTTGTTCAATTCCGTTGCTTATTATGTGGCTTGTACAGTTTTTCTCCAGCTGTTTATCTGGGTTCTGCCATAGCCGGATAGAACAGAAACTCAAGTCATACAATAAGTTTATTGAGTGGGATGGCTCACTTCTATGTTTTATATGGAAGAATATGTGGGATATTATCTAGAGTGGGATTGGGTT
TCAGATGTCAATAGAAAAATATGGTGGGTTCCCATCAGGCAAATTTAGACATGGAGATTCCTGGGGTTTCATTTCCTTCATAACATGTAGTATAGCATTCTGATCACTTTCTAACGCTTCAATGATGAAAGGCGGTGTTCACATTTTATTGTAATTTGTTTAAATTCACCTTACTTTGTAGCAGACAAATACATCAGAAA
CAATAAATTATTAAATTATATAGATCCTAGGAGTTTCTTTTCTCACAACATATTGAAGCGATAAGTGTTTGACCCCTTGAAGGGTGAATGCTTTTCATCTTTTGCTG
>TRINITY_DN101199_c0_g1_i8 from sample A5 / Example unspliced isoform:ATCCACGACTCCTCCGAAAGAAATTCTCAAATTGTGAGGATTTGCCCTCTGAAAACGGAGATCCCAGTCGCAACCCCTTTGCTTTCCTTTGCTTTCGATCAAGTTTGGCGGTTCAATTTCAATTTCAAGCAGCTACGTAGGGTTAAAGCAGCTAATTGCGGACGCCACAGCAAAATTGTTTTTTTTTAAAGCATGAAATT
ACCTCCTTTTGTCTGTGAATAGGTTGGTTTCTGGCATTGATCATAAAATGGGAGGAGAGAGTGAAAGAAGTAGTCGGAGGAACAGAAAAAAGAGTTCTAGCAGCAACAGGAAGAGAAGTAAAGATGCGTATACAGAGTCTGATAATTCTACCAGTGACACTGAAGAAGAAATGAAGAACCGGATGAATCGGAGTTACAGA
GATAAGAAATATCATAAATCAAGAAAGGCAGAGCGGGTAGTGGAGAGTTCAAGCGAGGGTTCTAGTGAGGAGGATCATCGCAGACGCAAGGACAAGAAAAGGAGGAAAAAGCAGAAGAGGGAAAGCAAATACAGGAGGAATGGGAGGAGTAAGAGGAGACGCACAGAACGTAGCTCGGATGAAGATTCAGAGTCACCGTC
TTCGGCTGATATGGCGGGGGAGGATCAGAATGCAGAGGAAACTCCGGAAAAGATTGCTAAGCTAATTCTGAATAAGTTCCCTTATGTGAAGCAGGAACTGAAACAGCTGCTGAAAATGATTGACGATGGACAAGCAATAGACATCCAAGAACTCTCCAACAAAGCTTTCTTGAAGCTTCTTAAGAAGTTGTTTAAATCTT
TAAAGCTTAAAAGGACAGGAAGAGGACTTTACATGCTGCCTAGAGGAGGTTGCCCCTGTCTGGAAGCTATAGGTTCTGTCATTGAGTGTGATACTAGTGTTGCAACTGAAAGTCAATCTGACTATCAAAGAGAGTTTCAGCAAAATGAACAATCTGATCTTCAAGGCAGGGAAACCAATTATAACAATGGAATACCCGAT
GCCAATCATGTTGAAGTATCTGATCTGAAAGCTGATTCACCTTCATCTACCAAACGCAGGGTAATTGGCCCAGCTATGCCCTCTGCAGAAATGTTGGCAGCTGCTGCTAAACTGACTGAGGCAGAAGCAGCCTTAAGGGATGCCGAAAAGGAATTGGAGAATGATGTCCTGATAGGACCCCCGCCACCAGCTGCTGTGAT
TGAAGCAGAATCAGCAAATGATGCGGAGCGCTTTGAAGAGGTGACAAGGATTATTCCTCTCGATGCAAGTAATCCATATGATGTGTTGGGCTTGAATAGAGGTGCATCAGCTGAGAGCATGAAGAAAAGGTATTGGAAGCTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCATTTACAA
TATTGAACCAATCTTTCAAAGATTTACAAGACCCAATAAAACGAGCTGCGGTTGATGATAAGATAATAATAAAAGAAGCGAAGGAAGAATTTGAGGCTGACTTGAAGGCACGTCGTGAAGCTGCACAGTGGAGACGTATACGAGGTGAGGCTATATCAGGTGATGATGAGTTGCTAGCTGAAGTTAAGCTGTCACCCAAA
CGAGATGAATGGATGACAATGCTCCCACCTGAAAGAAAGCCTGGCCCGAGTATGCATTCAACATTTTTTAGCAAGTCTGATAAACCTGAGCGAGGGGATACAAGTATTTGGACCGACACTCCATTGGAAAAAGCTCATAAAGCAAAGCAGCAgtacggtcctcgaacctttagtttactaacacaacaatctgcagttaa
ggacttaatatcataatgacaattatttttttgcagTTATTTGGAGGCCTACAATCAAACAGCTCTTACTGCATTGGATAATGATATTGGGTCCCTTGAGAAGGAACATTCTTCCGCTACAGCAGAACTGATGGATAAGTATAACAAGTCTAAGCGTTCCACGTCTCTTGTTGAGAAACATAAACATGAACAAAAGAAAA
AGTCAAAAAAAGTGGAAAAATCAGAGAAGCAGCAAGATGAAGAATGGTCAGGCAAGCATCCATGGAAACCTTGGGACCGAGAGACTGATTTAACAGCTGGGCGAAAGTCCGTGAATTTTGATGCTAATAGTTTCACAGAAGGGTTAACTTCAAGATTTTCTTCTGGAACTGTGGAGAGGAATTTCTTGTAAGTCTAGCCT
CTGTTTGTTCAATTCCGTTGCTTATTATGTGGCTTGTACAGTTTTTCTCCAGCTGTTTATCTGGGTTCTGCCATAGCCGGATAGAACAGAAACTCAAGTCATACAATAAGTTTATTGAGTGGGATGGCTCACTTCTATGTTTTATATGGAAGAATATGTGGGATATTATCTAGAGTGGGATTGGGTTTCAGATGTCAATA
GAAAAATATGGTGGGTTCCCATCAGGCAAATTTAGACATGGAGATTCCTGGGGTTTCATTTCCTTCATAACATGTAGTATAGCATTCTGATCACTTTCTAACGCTTCAATGATGAAAGGCGGTGTTCACATTTTATTGTAATTTGTTTAAATTCACCTTACTTTGTAGCAGACAAATACATCAGAAACAATAAATTATTA
AATTATATAGATCCTAGGAGTTTCTTTTCTCACAACATATTGAAGCGATAAGTGTTTGACCCCTTGAAGGGTGAATGCTTTTCATCTTTTGCTG
Intron 2 GTAAGCATTC ... GATGCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.17 | 11 | 1 | 12 |
| A2 | 53.57 | 13 | 3 | 15 |
| A3 | 36.17 | 30 | 6 | 17 |
| A4 | 38.46 | 16 | 0 | 10 |
| A5 | 25 | 15 | 3 | 5 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 52.94 | 8 | 0 | 9 |
| A8 | 62.5 | 3 | 1 | 5 |
| A9 | 56.67 | 13 | 2 | 17 |
| A10 | 53.57 | 13 | 4 | 15 |
>TRINITY_DN106281_c0_g2_i1 from sample A2 / Example spliced isoformTTTAAATTCATCCATGCAATTTTAACAATACATTGATTTTAGATTTGCCGGATTTAGACCAAGATGAGCGACGATTAACAATTATAACGCCCCTCGTGATCATCGGAAGGTAAGCAAATCTTACCTTTGCAAGGGGCAACCTAGAGTTGTGAAGACTCGTGGTGGGCACAAGAAATCGGGACGCCTCAGTAAACTGGAGA
ATGGAATGGAAGCTCCTTAGAGTGCAGGGTCCCTAATCCGTTTAGAAGGCGTGGCATTAATAGACCTAACCTGGAAGATCGCTACAGTGGGCTGAGGTGGAGGATTTTCAAGGTTTAATGTTACAGGCAAACAATGAAACAAATTTACCCTCGGAGAAAAACCCTCTCTTCATCTACAACCTAAACTAAACTAATGCATC
ATCCACGACTCCTCCGAAAGAAATTCTCAAATTGTGAGGATTTGCCCTCTGAAAACGGAGATCCCAGTCGCAACCCCTTTGCTTTCCTTTGCTTTCGATCAAGTTTGGCGGTTCAATTTCAATTTCAAGCAGCTACGTAGGGTTAAAGCAGCTAATTGCGGACGCCACAGCAAAATTGTTTTTTTTTAAAGCATGAAATT
ACCTCCTTTTGTCTGTGAATAGGTTGGTTTCTGGCATTGATCATAAAATGGGAGGAGAGAGTGAAAGAAGTAGTCGGAGGAACAGAAAAAAGAGTTCTAGCAGCAACAGGAAGAGAAGTAAAGATGCGTATACAGAGTCTGATAATTCTACCAGTGACACTGAAGAAGAAATGAAGAACCGGATGAATCGGAGTTACAGA
GATAAGAAATATCATAAAGCAAGAAAGGCAGAGCGGGTAGTGGAGAGTTCAAGCGAGGGTTCTAGTGAGGAGGATCATCGCAGACGCAAGGACAAGAAAAGGAGGAAAAAGCAGAAGAGGGAAAGCAAATACAGGAGGAATGGGAGGAGTAAGAGGAGACGCACAGAACGTAGCTCGGATGAAGATTCAGAGTCACCGTC
TTCGGCTGATATGGCGGGGGAGGATCAGAATGCAGAGGAAACTCCGGAAAAGATTGCTAAGCTAATTCTGAATAAGTTCCCTTATGTGAAGCAGGAACTGAAACAGCTGCTGAAAATGATTGACGATGGACAAGCAATAGACATCCAAGAACTCTCCAACAAAGCTTTCTTGAAGCTTCTTAAGAAGTTGTTTAAATCTT
TAAAGCTTAAAAGGACAGGAAGAGGACTTTACATGCTGCCTAGAGGAGGTTGCCCCTGTCTGGAAGCTATAGGTTCTGTCATTGAGTGTGATACTAGTGTTGCAACTGAAAGTCAATCTGACTATCAAAGAGAGTTTCAGCAAAATGAACAATCTGATCTTCAAGGCAGGGAAACCAATTATAACAATGGAATACCCGAT
GCCAATCATGTTGAAGTATCTGATCTGAAAGCTGATTCACCTTCATCTACCAAACGCAGGGTAATTGGCCCAGCTATGCCCTCTGCAGAAATGTTGGCAGCTGCTGCTAAACTGACTGAGGCAGAAGCAGCCTTAAGGGATGCCGAAAAGGAATTGGAGAATGATGTCCTGATAGGACCCCCGCCACCAGCTGCTGTGAT
TGAAGCAGAATCAGCAAATGATGCGGAGCGCTTTGAAGAGGTGACAAGGATTATTCCTCTCGATGCAAGTAATCCATATGATGTGTTGGGCTTGAATAGAGGTGCATCAGCTGAGAGCATGAAGAAAAGGTATTGGAAGCTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCATTTACAA
TATTGAACCAATCTTTCAAAGATTTACAAGACCCAATAAAACGAGCTGCGGTTGATGATAAGATAATAATAAAAGAAGCGAAGGAAGAATTTGAGGCTGACTTGAAGGCACGTCGT
>TRINITY_DN106281_c0_g2_i2 from sample A2 / Example unspliced isoform:TTTAAATTCATCCATGCAATTTTAACAATACATTGATTTTAGATTTGCCGGATTTAGACCAAGATGAGCGACGATTAACAATTATAACGCCCCTCGTGATCATCGGAAGGTAAGCAAATCTTACCTTTGCAAGGGGCAACCTAGAGTTGTGAAGACTCGTGGTGGGCACAAGAAATCGGGACGCCTCAGTAAACTGGAGA
ATGGAATGGAAGCTCCTTAGAGTGCAGGGTCCCTAATCCGTTTAGAAGGCGTGGCATTAATAGACCTAACCTGGAAGATCGCTACAGTGGGCTGAGGTGGAGGATTTTCAAGGTTTAATGTTACAGGCAAACAATGAAACAAATTTACCCTCGGAGAAAAACCCTCTCTTCATCTACAACCTAAACTAAACTAATGCATC
ATCCACGACTCCTCCGAAAGAAATTCTCAAATTGTGAGGATTTGCCCTCTGAAAACGGAGATCCCAGTCGCAACCCCTTTGCTTTCCTTTGCTTTCGATCAAGTTTGGCGGTTCAATTTCAATTTCAAGCAGCTACGTAGGGTTAAAGCAGCTAATTGCGGACGCCACAGCAAAATTGTTTTTTTTTAAAGCATGAAATT
ACCTCCTTTTGTCTGTGAATAGGTTGGTTTCTGGCATgtaagcattctcttcagcacaagcctttttcttttgaattttccttctcattttgaatttgatcttttcattgacaatgggccacggagtttaaaccctacttattttaaacttcaaaatttgaaacccaaatgttggttctgtgcatttaaaatattttctg
gatgcatcagTGATCATAAAATGGGAGGAGAGAGTGAAAGAAGTAGTCGGAGGAACAGAAAAAAGAGTTCTAGCAGCAACAGGAAGAGAAGTAAAGATGCGTATACAGAGTCTGATAATTCTACCAGTGACACTGAAGAAGAAATGAAGAACCGGATGAATCGGAGTTACAGAGATAAGAAATATCATAAAGCAAGAAAG
GCAGAGCGGGTAGTGGAGAGTTCAAGCGAGGGTTCTAGTGAGGAGGATCATCGCAGACGCAAGGACAAGAAAAGGAGGAAAAAGCAGAAGAGGGAAAGCAAATACAGGAGGAATGGGAGGAGTAAGAGGAGACGCACAGAACGTAGCTCGGATGAAGATTCAGAGTCACCGTCTTCGGCTGATATGGCGGGGGAGGATCA
GAATGCAGAGGAAACTCCGGAAAAGATTGCTAAGCTAATTCTGAATAAGTTCCCTTATGTGAAGCAGGAACTGAAACAGCTGCTGAAAATGATTGACGATGGACAAGCAATAGACATCCAAGAACTCTCCAACAAAGCTTTCTTGAAGCTTCTTAAGAAGTTGTTTAAATCTTTAAAGCTTAAAAGGACAGGAAGAGGAC
TTTACATGCTGCCTAGAGGAGGTTGCCCCTGTCTGGAAGCTATAGGTTCTGTCATTGAGTGTGATACTAGTGTTGCAACTGAAAGTCAATCTGACTATCAAAGAGAGTTTCAGCAAAATGAACAATCTGATCTTCAAGGCAGGGAAACCAATTATAACAATGGAATACCCGATGCCAATCATGTTGAAGTATCTGATCTG
AAAGCTGATTCACCTTCATCTACCAAACGCAGGGTAATTGGCCCAGCTATGCCCTCTGCAGAAATGTTGGCAGCTGCTGCTAAACTGACTGAGGCAGAAGCAGCCTTAAGGGATGCCGAAAAGGAATTGGAGAATGATGTCCTGATAGGACCCCCGCCACCAGCTGCTGTGATTGAAGCAGAATCAGCAAATGATGCGGA
GCGCTTTGAAGAGGTGACAAGGATTATTCCTCTCGATGCAAGTAATCCATATGATGTGTTGGGCTTGAATAGAGGTGCATCAGCTGAGAGCATGAAGAAAAGGTATTGGAAGCTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCATTTACAATATTGAACCAATCTTTCAAAGATTTAC
AAGACCCAATAAAACGAGCTGCGGTTGATGATAAGATAATAATAAAAGAAGCGAAGGAAGAATTTGAGGCTGACTTGAAGGCACGTCGT