sp|Q42112|RLA02_ARATH ----> Large ribosomal subunit protein uL10y

Intron 1 GTTCGTGGTC ... TCTTCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	15.9	169.2	2.2	32
A2	19.64	135	4.6	33
A3	20.46	140	3.8	36
A4	17	107.4	0.2	22
A5	15.38	93.6	0	17
A6	18.16	1027.2	4.4	228
A7	17.82	848.4	2	184
A8	19.36	757.8	5.8	182
A9	20.17	783.4	7.6	198
A10	18.9	609.2	1.8	142

>TRINITY_DN119558_c5_g1_i2 from sample A1 / Example spliced isoform

CGTTATACTTTTGACATTTATAATTTTTTCAAAATACGTTTTACATTTATAAAATTTAAGCAGCTTCATAAAGATTTTAAGAAGAGGAAACCCTCTTGCTGTCGCTCTGATTTAAACATCGTAGAAACCCTATTCGAAGATAAATCCCTGTTCTGAAGCTCTATTCTCTCATTGTGTTTGCTACTTTGGGTGTTTGTTCT
GCTCTGGTTTGCTCCCAGCATCAAAGATGCCGAAGTCTAAGCGCAACAAAGTGGTGACTCTTTCTAAAACCAAAAAGAAAGGAAGGGAGCATAAGGAATCAATAGTGAATCAAGTGAGGCAGGCTTTGGAGGATTACATCTCAGTTTATGTTTTCTCATTTGAGAATATGCGGAATGTGAAATTTAAAGATCTCAGGGAC
CGTTTAAAGGGTAGCAGCAGATTCTTTCTAGGATCAAACAAAGTATTGCAGATTGCAGTGGGTCGCACGGTTTCTGATGAAGTCAAAGATGGTATTCATAAAGCTAGTGAGATGCTACATGGTGAATGTGGTTTATTCTTCACCAATCTACCAAAAGAAGAGGTTATGAGAATTTTTGAAACTTTTGAAGAACGTGATTT
TGCAAGGACTGGATCACTCGCGACAGAAACGATTGAGTTGGAGGAAGGTCCTTTGGAACAATTCACACATGAGATGGAACCATTTCTGCGCAAGCAGGGAATGCCGGTTCGATTAAATAAAGGTGTGATAGAATTAGTAGCAGATCATGTAGTTTGTCAGGAAGGAGAGCCAATATCACCTGAAGCATCTCGTATACTGC
ATTTACTCGGTGTTCAAATGGCTACGTTCCGACTCAACCTTGTATGCCGGTGGAGTCCTGATGAATTTGAGATTTTCAGAGATCATGGTGTGGCAAATCCTTCAGATGGTTCATAGCACATGCATTAAGTGTCAAATTCTTCTACAAGTGTTTTGGTTGACGGGCTTATTTTAATGTAATACTTAAGTCCCTTGTGGCGT
AAAGTATTGGTTTATGAATGGGAAAGTTTCTGAGAATAGTTTTCTCATTCTAGTGTTGCTAGAGAAATTGGCTTGTAATATAGATGGCACTGTAGCTAAATTGTTGCTGAGATGAATTCAGTAAAATTTTGAGGTTGTATTGGAAGGCATTTATAACTTTAATGAAAGTCATGATAATGTTTTGTCTACCC

>TRINITY_DN119558_c5_g1_i7 from sample A1 / Example unspliced isoform:

CACCTGAAGCATCTCGTATACTGgttcgtggtcacactttcatagcatatacttgtaaaccctgtctttgatatatttcaattttaatagaatgcctacttagtcagtgttcagtattgttatgagtagacaataacctgtttcttctgcagCATTTACTCGGTGTTCAAATGGCTACGTTCCGACTCAACCTTGTATGC
CGGTGGAGTCCTGATGAATTTGAGATTTTCAGAGATCATGGTGTGGCAAATCCTTCAGATGGTTCATAGCACATGCATTAAGTGTCAAATTCTTCTACAAGTGTTTTGGTTGACGGGCTTATTTTAATGTAATACTTAAGTCCCTTGTGGCGTAAAGTATTGGTTTATGAATGGGAAAGTTTCTGAGAATAGTTTTCTCA
TTCTAGTGTTGCTAGAGAAATTGGCTTGTAATATAGATGGCACTGTAGCTAAATTGTTGCTGAGATGAATTCAGTAAAATTTTGAGGTTGTATTGGAAGGCATTTATAACTTTAATGAAAGTCATGATAATGTTTTGTCTACCC

Intron 2 GTATGGCTAC ... TCTTTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.75	144.5	2.3	29
A2	16.09	124.3	1.8	23.8
A3	18.31	136.3	5.3	30.5
A4	18.28	93.3	0.8	20.8
A5	24.16	73.8	2.8	23.5
A6	21.46	522.5	2	142.5
A7	23.59	493	0	152
A8	17.74	376.3	0	81
A9	19.17	502.3	0.5	119
A10	18.42	406	0.3	91.5

>TRINITY_DN119558_c5_g1_i2 from sample A1 / Example spliced isoform

CGTTATACTTTTGACATTTATAATTTTTTCAAAATACGTTTTACATTTATAAAATTTAAGCAGCTTCATAAAGATTTTAAGAAGAGGAAACCCTCTTGCTGTCGCTCTGATTTAAACATCGTAGAAACCCTATTCGAAGATAAATCCCTGTTCTGAAGCTCTATTCTCTCATTGTGTTTGCTACTTTGGGTGTTTGTTCT
GCTCTGGTTTGCTCCCAGCATCAAAGATGCCGAAGTCTAAGCGCAACAAAGTGGTGACTCTTTCTAAAACCAAAAAGAAAGGAAGGGAGCATAAGGAATCAATAGTGAATCAAGTGAGGCAGGCTTTGGAGGATTACATCTCAGTTTATGTTTTCTCATTTGAGAATATGCGGAATGTGAAATTTAAAGATCTCAGGGAC
CGTTTAAAGGGTAGCAGCAGATTCTTTCTAGGATCAAACAAAGTATTGCAGATTGCAGTGGGTCGCACGGTTTCTGATGAAGTCAAAGATGGTATTCATAAAGCTAGTGAGATGCTACATGGTGAATGTGGTTTATTCTTCACCAATCTACCAAAAGAAGAGGTTATGAGAATTTTTGAAACTTTTGAAGAACGTGATTT
TGCAAGGACTGGATCACTCGCGACAGAAACGATTGAGTTGGAGGAAGGTCCTTTGGAACAATTCACACATGAGATGGAACCATTTCTGCGCAAGCAGGGAATGCCGGTTCGATTAAATAAAGGTGTGATAGAATTAGTAGCAGATCATGTAGTTTGTCAGGAAGGAGAGCCAATATCACCTGAAGCATCTCGTATACTGC
ATTTACTCGGTGTTCAAATGGCTACGTTCCGACTCAACCTTGTATGCCGGTGGAGTCCTGATGAATTTGAGATTTTCAGAGATCATGGTGTGGCAAATCCTTCAGATGGTTCATAGCACATGCATTAAGTGTCAAATTCTTCTACAAGTGTTTTGGTTGACGGGCTTATTTTAATGTAATACTTAAGTCCCTTGTGGCGT
AAAGTATTGGTTTATGAATGGGAAAGTTTCTGAGAATAGTTTTCTCATTCTAGTGTTGCTAGAGAAATTGGCTTGTAATATAGATGGCACTGTAGCTAAATTGTTGCTGAGATGAATTCAGTAAAATTTTGAGGTTGTATTGGAAGGCATTTATAACTTTAATGAAAGTCATGATAATGTTTTGTCTACCC

>TRINITY_DN119558_c5_g1_i3 from sample A1 / Example unspliced isoform:

ATGGTATTCATAAAGCTAGTGAGgtatggctactttttcttgttctagagacttgtataatgaacaatttgtaatctatcaacattaaacgcgactggtgttggtctttttcagATGCTACATGGTGAATGTGGTTTATTCTTCACCAATCTACCAAAAGAAGAGGTTATGAGAATTTTTGAAACTTTTGAAGAACGTGA
TTTTGCAAGGACTGGATCACTCGCGACAGAAACGGTATGCAATGAACAATGTGATTTTCTGCTCTTCCAATTTTAACTTTTTAAGTGAACAGGAGCTAGAAGACATGAAATGACTAGTTGGTGCAAACCTTTCTAAGCTATTTACTTTTCCGTGTGATGGATAAGATTACATTGGCAGTTCAGCAGTCATTGGTGCAATT
TTTACTTTTCCTAGCCGCAGGCAGGATATATGCTCTCATTTGTAACCATAGTAGCATAATTTGGCCAAAATGGGCTCTTCCATATGGAAATCCAGCTAAGAATTTGATTTGGTTGAATTTGCCCCCAAATTCGTTTTGAACCATACAAAAACTATTTACAGCAAAAACAATAACTTTGTAACATAAAATTTTTAATTTAA
TAATTGTGAAATTATTTTGTTGGGTTTAAAACATGGAAACCTCAAAATGTTCGGTAATGGGGCATATTTATTATTATGATGTCTGTACCTGTAGGGAGCACTTTCATACATTCTCTCCAAGAAATTTTAAATGTCATTGCTAGATATTTTCATATTAATGGCATCCAGACTTTCGAATTGGATTTTTCCAACACGAATTA
ATTTTTCCCAGCACAC