sp|Q500U8|TKPR1_ARATH ----> Tetraketide alpha-pyrone reductase 1
Intron 1 GTCAGTATTT ... GGACATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.53 | 35 | 9 | 15 |
| A2 | 20 | 42 | 12 | 9 |
| A3 | 27.03 | 27 | 6 | 14 |
| A4 | 20.72 | 44 | 14 | 9 |
| A5 | 14.67 | 32 | 6 | 5 |
| A6 | 13.68 | 328 | 65 | 39 |
| A7 | 19.24 | 149 | 35 | 36 |
| A8 | 13.99 | 169 | 26 | 29 |
| A9 | 14.97 | 213 | 37 | 38 |
| A10 | 14.78 | 124 | 28 | 15 |
>TRINITY_DN39447_c0_g1_i2 from sample A9 / Example spliced isoformGTTCGGTCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACGAGATCAAAGACCATATTGATTGTATTGCACTTTCTTCAATTCTTCTGGTAA
ACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAG
CTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCAC
ATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAA
TTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAACCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAAT
TATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATA
TCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTCCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAATGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCACAATGAAAGTG
GAATTTTAATTTTGCTTTCTCATTAACTTTTCGTTTTTTTTTATCATATTGGTCTGCAT
>TRINITY_DN39447_c0_g1_i5 from sample A9 / Example unspliced isoform:GATGTCCTTGGCTTGTTAAAAGGTATAATTTTACATTGTTCAGTAAGGATTTAGTCTTTTCTCTTCTTTCTGTATAACCTGTATGTATGAATAATAACAAAAGCCATAACTCTTTACAAAACTATAAAATCTCCTTGAACAAGAAGATGGTGTTAGGAAAAACTAAAAAATCTCTTTCAATAATAAAATGATCATGCTAA
CAAAAAAAAGATCATGCTAACGTTTATGGAGAATAGAATAAATTGTGAATGGGTGTATTATTAATACTAACAAGAAAAAGATCATGCCAATGCATATGGAGAATAGAATAAACTGTGAATGAATGTACTATTAAGACACTTTTGTGTTAGATCACTGATTCAAAACTCTGTAATTACTAGCTTAAAAAAAAAATCATGAT
AACAACTTTGAAATCACAGTATAAATGAACAAAAAGATGATACTCGCCAAACTAAAAAATCTCGTTATACAAGGAACTGATGCTCACAACTTTGAAAATACAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAACCCACTGC
CAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAgtcagtatttccccagtatctctatctttctagagcttatacatgatttcttaatttttgaatgattttgggtatccagattcatacatgatttcttatgcata
tacatgatttcttaatatttgaatgactgtgagtatcagattcatacatgatttcttaatttttgaatgattgtggacatccagATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGC
TTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTCCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAATGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGA
TATATGCTTCTTCAGCACAATGAAAGTGGAATTTTAATTTTGCTTTCTCATTAACTTTTCGTTTTTTTTTATCATATTGGTCTGCAT
Intron 2 GTACTTTGAA ... GATTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.82 | 45 | 25 | 17 |
| A2 | 32 | 68 | 33 | 31 |
| A3 | 46.15 | 21 | 18 | 18 |
| A4 | 29.52 | 37 | 15 | 16 |
| A5 | 27.94 | 49 | 17 | 21 |
| A6 | 19.1 | 144 | 35 | 33 |
| A7 | 26.11 | 64.6 | 15.6 | 30 |
| A8 | 21.21 | 65 | 17 | 18 |
| A9 | 21.29 | 98 | 28 | 25 |
| A10 | 17.65 | 56 | 13 | 11 |
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
>TRINITY_DN117809_c0_g1_i6 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCA
TCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGgtactttgaaaatattatccaccaaatattttgcttttgattccaccaaggatttttttttattgctccaaggaattctaggtactttacagagttttgagtaaggg
gtatgttcaattttggttggttactttctttttataactagcatagatttagtcattgtttaatgattgggaggatcaccattatgtaagaagtctatatgaaaattccagctttatttaggtttttttgtttttcaaagaaaatatggtgaggagattcaaaggatatttttctatgtctttttaataaatttcttgta
accataaactagagatttgttatttcacacagaactaaccaaatatcaaaaaattatttgaagtaaactcttaaactggattcattttataaaaaaacataaaacttgaatacaaatcttttgatctatctcctgcatatgcataatacctgaaagcttttgatgagtcctcatgcataataacttgagatgaaaacctt
ttgatcaatctccctgcaggatatcttgaaaaccttttgatcaatctccctgcatgatatcttgaaactttttgatcagtcttcatgcctaataacttcagttgtaaaccttttaatgggtctccatgcataataaagttgtaagccttttaatgggtctccattcataatagataaaatggttaaaatagagcaatgct
aattgttatagaggataatattaaattgaaaaactattatgtatttatttctatcaaaaccctctttctgatattagatttaacagATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTT
CCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGTATAATTTTACATTGTTCAGTAAGGATTTAGTCTTTTCTCTTCTTTCTGTATAACCTGTATGTATGAATAATAACAAAAGCCATAACTCTTTACAAAACTATAAAATCTCCTTGAACAAGAAGATGGTGTTAGGAAAAATTAAAAAATCT
CTTTCACTAATAAAATGATCATGCTAACAAGAAAAAGATCATACTAACGTTTATGGAGAATAGAATCAACTATGAATGGGTGTATTATTAATACTAACAAGAAAAAGATTATGCTAATGTATATGGAGAATAGAATAAACTGTGAATGAATGTACTATTAAGACACTTTTGTGTTAGATCACTGATTCAAAACTCTGTAA
TTACTAGCTTAAAAAAAAAATCATGATAACAACTTTGAAATCACAGTATAAATGAACAAAAAGATGATACTAGCCCAACTAAAAAAATGCTCACAACTTTGAAAATACAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAG
CCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACA
Intron 3 GCAAGTTTCT ... TTGAGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.24 | 21 | 12 | 20 |
| A2 | 29.11 | 56 | 15 | 31 |
| A3 | 31.2 | 43 | 13 | 26 |
| A4 | 26.15 | 24 | 4 | 13 |
| A5 | 30.14 | 51 | 26 | 18 |
| A6 | 22.82 | 159 | 37 | 57 |
| A7 | 25.53 | 70 | 12 | 36 |
| A8 | 25.77 | 72 | 12 | 38 |
| A9 | 25.58 | 80 | 18 | 37 |
| A10 | 21.05 | 60 | 17 | 15 |
>TRINITY_DN117809_c0_g1_i6 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCA
TCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGGTACTTTGAAAATATTATCCACCAAATATTTTGCTTTTGATTCCACCAAGGATTTTTTTTTATTGCTCCAAGGAATTCTAGGTACTTTACAGAGTTTTGAGTAAGGG
GTATGTTCAATTTTGGTTGGTTACTTTCTTTTTATAACTAGCATAGATTTAGTCATTGTTTAATGATTGGGAGGATCACCATTATGTAAGAAGTCTATATGAAAATTCCAGCTTTATTTAGGTTTTTTTGTTTTTCAAAGAAAATATGGTGAGGAGATTCAAAGGATATTTTTCTATGTCTTTTTAATAAATTTCTTGTA
ACCATAAACTAGAGATTTGTTATTTCACACAGAACTAACCAAATATCAAAAAATTATTTGAAGTAAACTCTTAAACTGGATTCATTTTATAAAAAAACATAAAACTTGAATACAAATCTTTTGATCTATCTCCTGCATATGCATAATACCTGAAAGCTTTTGATGAGTCCTCATGCATAATAACTTGAGATGAAAACCTT
TTGATCAATCTCCCTGCAGGATATCTTGAAAACCTTTTGATCAATCTCCCTGCATGATATCTTGAAACTTTTTGATCAGTCTTCATGCCTAATAACTTCAGTTGTAAACCTTTTAATGGGTCTCCATGCATAATAAAGTTGTAAGCCTTTTAATGGGTCTCCATTCATAATAGATAAAATGGTTAAAATAGAGCAATGCT
AATTGTTATAGAGGATAATATTAAATTGAAAAACTATTATGTATTTATTTCTATCAAAACCCTCTTTCTGATATTAGATTTAACAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTT
CCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGTATAATTTTACATTGTTCAGTAAGGATTTAGTCTTTTCTCTTCTTTCTGTATAACCTGTATGTATGAATAATAACAAAAGCCATAACTCTTTACAAAACTATAAAATCTCCTTGAACAAGAAGATGGTGTTAGGAAAAATTAAAAAATCT
CTTTCACTAATAAAATGATCATGCTAACAAGAAAAAGATCATACTAACGTTTATGGAGAATAGAATCAACTATGAATGGGTGTATTATTAATACTAACAAGAAAAAGATTATGCTAATGTATATGGAGAATAGAATAAACTGTGAATGAATGTACTATTAAGACACTTTTGTGTTAGATCACTGATTCAAAACTCTGTAA
TTACTAGCTTAAAAAAAAAATCATGATAACAACTTTGAAATCACAGTATAAATGAACAAAAAGATGATACTAGCCCAACTAAAAAAATGCTCACAACTTTGAAAATACAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAG
CCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACA
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGgcaagtttcttttctcttttttttcatcttcccaaatccaccatgcacataagtgtcgtgggagttaaatcagatcccaaggcaagtttcttttct
cttttttttcatcttcccaaatccaccatgcacataagtgggtggaactatgaacacacaagttacaactgtgaacattcacagttccaacctacctttctgccaggtaatcattgagcatttccatggtgcttaaggtttgccattcatctcaatctaagtagcagttgtgaattagccttttgagtatgtgactatta
aatttattgaaatactgttgagtgtagGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
Intron 4 GTCAGTATTT ... GGACATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.53 | 35 | 9 | 15 |
| A2 | 20 | 42 | 12 | 9 |
| A3 | 27.03 | 27 | 6 | 14 |
| A4 | 20.72 | 44 | 14 | 9 |
| A5 | 14.67 | 32 | 6 | 5 |
| A6 | 14.06 | 328 | 68.3 | 39 |
| A7 | 19.53 | 149 | 36.3 | 36 |
| A8 | 13.99 | 169 | 26 | 29 |
| A9 | 14.97 | 213 | 37 | 38 |
| A10 | 14.78 | 124 | 28 | 15 |
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
>TRINITY_DN117809_c0_g1_i1 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGTATAATTTTACATTGTTCAG
TAAGGATTTAGTCTTTTCTCTTCTTTCTGTATAACCTGTATGTATGAATAATAACAAAAGCCATAACTCTTTACAAAACTATAAAATCTCCTTGAACAAGAAGATGGTGTTAGGAAAAACTAAAAAATCTCTTTCAATAATAAAATGATCATGCTAACAAAAAAAAGATCATGCTAACGTTTATGGAGAATAGAATAAAT
TGTGAATGGGTGTATTATTAATACTAACAAGAAAAAGATCATGCCAATGCATATGGAGAATAGAATAAACTGTGAATGAATGTACTATTAAGACACTTTTGTGTTAGATCACTGATTCAAAACTCTGTAATTACTAGCTTAAAAAAAAAATCATGATAACAACTTTGAAATCACAGTATAAATGAACAAAAAGATGATAC
TCGCCAAACTAAAAAATCTCGTTATACAAGGAACTGATGCTCACAACTTTGAAAATACAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTAT
GAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAgtcagtatttccccagtatctctatctttctagagcttatacatgatttcttaatttttgaatgattttgggtatccagattcatacatgatttttgaatttttgaatgattgtgagtatcagattcatacatgatttcttaatttt
tgaatgattgtggacatccagATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTT
GTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTT
TTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGCATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
Intron 5 GTAATTAAAT ... GCTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.9 | 57.4 | 28.2 | 22.2 |
| A2 | 25.85 | 76 | 27.4 | 26.5 |
| A3 | 18.27 | 89 | 32.1 | 19.9 |
| A4 | 26.67 | 66 | 24 | 24 |
| A5 | 31.86 | 77 | 39.9 | 36 |
| A6 | 28.34 | 134 | 61.2 | 53 |
| A7 | 26.71 | 84 | 23.4 | 30.6 |
| A8 | 28.57 | 45 | 15.3 | 18 |
| A9 | 17.21 | 91.4 | 32.2 | 19 |
| A10 | 26.52 | 97 | 42.9 | 35 |
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
>TRINITY_DN117809_c0_g1_i4 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGgtaattaaattatcctaccacttcttgatttgccattgctttggcttccttgccagtagaaaagcc
ttgaatttggatttgcttctgcagGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGT
TTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAA
TCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTAAATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGT
ACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACAT
TTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTT
GAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTA
AATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATG
AAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGCATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
Intron 6 GCAAGTTTTT ... TTGAGCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.78 | 21 | 9 | 20 |
| A2 | 35.63 | 56 | 12.5 | 31 |
| A3 | 37.68 | 43 | 11.5 | 26 |
| A4 | 35.14 | 24 | 3 | 13 |
| A5 | 26.09 | 51 | 15 | 18 |
| A6 | 26.39 | 159 | 19 | 57 |
| A7 | 33.96 | 70 | 10 | 36 |
| A8 | 34.55 | 72 | 6 | 38 |
| A9 | 31.62 | 80 | 10 | 37 |
| A10 | 20 | 60 | 10.5 | 15 |
>TRINITY_DN43549_c0_g1_i9 from sample A7 / Example spliced isoformCAGAAAACTGAAGTTCGGTCCTCATTCTGCGTGACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCACTTTCTTCAA
TTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCCTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAA
GAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCG
AGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGGTACTTTGAAAATATTATCCACCAAATATTTTGCTTTTGATTCCACCAAGGATTTTTTTTTATTGCTCCAAGGAATTCTAGGTACTTT
ACAGAGTTTTGAGTAAGGGGTATGTTCAATTTTGGTTGGTTACTTTCTTTTTATAACTAGCATAGATTTAGTCATTGTTTAATGATTGGGAGGATCACCATTATGTAAGAAGTCTATATGAAAATTCCAGCTTTAATATATTTAGGTTTTTTTGTTTTTCAAAGAAAATATG
>TRINITY_DN43549_c0_g1_i8 from sample A7 / Example unspliced isoform:CAGAAAACTGAAGTTCGGTCCTCATTCTGCGTGACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCACTTTCTTCAA
TTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCCTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAA
GAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGgcaagtttttttttctctttttttttcatcttcccaaatccaccatgcacataagtgggtggaactatgaacacaca
agttacaactgtgaacattcacagttccaacctacctttctgccaggtaatcattgagcatttccatggtgcttaaggtttgccattcatctcaatctaagtagcagttgtgaattagccttttgagtatgtgactattaaatttattgaaatactgttgagcgtagGCTGAAATTGTGGATCCAGCTGTTAGAGGAACT
CTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATG
GGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTT
ATGAGGAACCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAA
GAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTCCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAATGTAATGAAAGTGTTTATATGACAC
TGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCAC
Intron 7 GTATAATTTT ... GAAAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.69 | 54 | 12.2 | 13.1 |
| A2 | 14.75 | 75 | 25.1 | 13.3 |
| A3 | 7.84 | 60 | 17.6 | 5.3 |
| A4 | 17.27 | 47 | 12.8 | 10.3 |
| A5 | 4.69 | 45 | 17.4 | 2.3 |
| A6 | 14.88 | 253 | 48.7 | 47 |
| A7 | 14.23 | 94 | 12.5 | 16.5 |
| A8 | 12.44 | 129 | 17.3 | 19.1 |
| A9 | 8.79 | 169 | 32.8 | 16.8 |
| A10 | 13.44 | 103 | 25.8 | 16.8 |
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
>TRINITY_DN117809_c0_g1_i1 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGgtataattttacattgttcag
taaggatttagtcttttctcttctttctgtataacctgtatgtatgaataataacaaaagccataactctttacaaaactataaaatctccttgaacaagaagatggtgttaggaaaaactaaaaaatctctttcaataataaaatgatcatgctaacaaaaaaaagatcatgctaacgtttatggagaatagaataaat
tgtgaatgggtgtattattaatactaacaagaaaaagatcatgccaatgcatatggagaatagaataaactgtgaatgaatgtactattaagacacttttgtgttagatcactgattcaaaactctgtaattactagcttaaaaaaaaaatcatgataacaactttgaaatcacagtataaatgaacaaaaagatgatac
tcgccaaactaaaaaatctcgttatacaaggaactgatgctcacaactttgaaaatacagGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTAT
GAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAGTCAGTATTTCCCCAGTATCTCTATCTTTCTAGAGCTTATACATGATTTCTTAATTTTTGAATGATTTTGGGTATCCAGATTCATACATGATTTTTGAATTTTTGAATGATTGTGAGTATCAGATTCATACATGATTTCTTAATTTT
TGAATGATTGTGGACATCCAGATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTT
GTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTT
TTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGCATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
Intron 8 GTCAGTATTT ... GGACATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.45 | 35 | 6 | 12 |
| A2 | 18.81 | 41 | 10 | 9 |
| A3 | 20.59 | 27 | 6 | 8 |
| A4 | 22.12 | 44 | 14 | 11 |
| A5 | 14.67 | 32 | 6 | 5 |
| A6 | 14.47 | 328 | 73 | 38 |
| A7 | 17.91 | 149 | 36 | 29 |
| A8 | 13.99 | 169 | 26 | 29 |
| A9 | 13.94 | 213 | 36 | 33 |
| A10 | 14.78 | 124 | 28 | 15 |
>TRINITY_DN100581_c0_g1_i6 from sample A4 / Example spliced isoformAAAAAATCTCTTTCAATAATAAAATGATCATGCTAACAAAAAAAAGATCATGCTAACGTTTATGGAGAATAGAATAAATTGTGAATGGGTGTATTATTAATACTAACAAGAAAAAGATCATGCCAATGCATATGGAGAATAGAATAAACTGTGAATGAATGTACTATTAAGACACTTTTGTGTTAGATCACTGATTCAAA
ACTCTGTAATTACTAGCTTAAAAAAAAAATCATGATAACAACTTTGAAATCACAGTATAAATGAACAAAAAGATGATACTAGCCCAACTAAAAAAATGCTCACAACTTTGAAAATACAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTT
ATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTTAAAACCATACAA
GAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACAC
TGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCACAATGAAAGTGGAATTTTAATTTTGCTTTCTCATTAACTTTTCGTTTTTTTTTATCATATTGGTCTGCATACGTT
>TRINITY_DN100581_c0_g1_i11 from sample A4 / Example unspliced isoform:GTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGGAGCA
GCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACATGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGG
TGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAAT
CCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAA
GGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAgtcagt
atttccccactatctctatctttctagagcttatacatgatttcttaatttttgaatgattgtggacatccagATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTTAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAG
GGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGATATATGCTTCT
TCAGCACAATGAAAGTGGAATTTTAATTTTGCTTTCTCATTAACTTTTCGTTTTTTTTTATCATATTGGTCTGCATACGTT
Intron 9 GTATAATTTT ... GAAAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.32 | 54 | 15.4 | 16.4 |
| A2 | 17.19 | 75 | 31.1 | 15.6 |
| A3 | 10.45 | 60 | 21.7 | 7 |
| A4 | 21.67 | 47 | 15.4 | 13 |
| A5 | 6.25 | 45 | 20.6 | 3 |
| A6 | 19.68 | 253 | 60.3 | 62 |
| A7 | 19.66 | 94 | 16.6 | 23 |
| A8 | 16.31 | 129 | 21.6 | 25.1 |
| A9 | 11.52 | 169 | 38.9 | 22 |
| A10 | 18.25 | 103 | 32.6 | 23 |
>TRINITY_DN117809_c0_g1_i9 from sample A1 / Example spliced isoformCCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCTCTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGTCGTGGGAGTTAAATCAGATCCCAAGGCAAGTTTCTTTTCT
CTTTTTTTTCATCTTCCCAAATCCACCATGCACATAAGTGGGTGGAACTATGAACACACAAGTTACAACTGTGAACATTCACAGTTCCAACCTACCTTTCTGCCAGGTAATCATTGAGCATTTCCATGGTGCTTAAGGTTTGCCATTCATCTCAATCTAAGTAGCAGTTGTGAATTAGCCTTTTGAGTATGTGACTATTA
AATTTATTGAAATACTGTTGAGTGTAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACT
TTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTA
TGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAGCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACT
TACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATT
AACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGGTATACACTTGATATACGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGC
ATTGTTAAAGCATTCTTTATAGTATAATAAAACTCTCCATTAAATATTGATTTTTTTA
>TRINITY_DN117809_c0_g1_i6 from sample A1 / Example unspliced isoform:CCTCATTCTGCGTTACATGCACAACTAGCGTTTCTAAAACCTAATGGTGGGAAAAGTGTGAAGCGAACAGTTTACTTGCTTTCCATCTTAATTGCATGTCTAGCGACCTATTGTGAGCGTGCTGAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGA
TATGGCTCAAGCCAAAGAGAAGGACAACGTTAGTATAGTGTGCGTGACAGGAGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGA
AAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCCATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCA
TCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGGTACTTTGAAAATATTATCCACCAAATATTTTGCTTTTGATTCCACCAAGGATTTTTTTTTATTGCTCCAAGGAATTCTAGGTACTTTACAGAGTTTTGAGTAAGGG
GTATGTTCAATTTTGGTTGGTTACTTTCTTTTTATAACTAGCATAGATTTAGTCATTGTTTAATGATTGGGAGGATCACCATTATGTAAGAAGTCTATATGAAAATTCCAGCTTTATTTAGGTTTTTTTGTTTTTCAAAGAAAATATGGTGAGGAGATTCAAAGGATATTTTTCTATGTCTTTTTAATAAATTTCTTGTA
ACCATAAACTAGAGATTTGTTATTTCACACAGAACTAACCAAATATCAAAAAATTATTTGAAGTAAACTCTTAAACTGGATTCATTTTATAAAAAAACATAAAACTTGAATACAAATCTTTTGATCTATCTCCTGCATATGCATAATACCTGAAAGCTTTTGATGAGTCCTCATGCATAATAACTTGAGATGAAAACCTT
TTGATCAATCTCCCTGCAGGATATCTTGAAAACCTTTTGATCAATCTCCCTGCATGATATCTTGAAACTTTTTGATCAGTCTTCATGCCTAATAACTTCAGTTGTAAACCTTTTAATGGGTCTCCATGCATAATAAAGTTGTAAGCCTTTTAATGGGTCTCCATTCATAATAGATAAAATGGTTAAAATAGAGCAATGCT
AATTGTTATAGAGGATAATATTAAATTGAAAAACTATTATGTATTTATTTCTATCAAAACCCTCTTTCTGATATTAGATTTAACAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTT
CCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGgtataattttacattgttcagtaaggatttagtcttttctcttctttctgtataacctgtatgtatgaataataacaaaagccataactctttacaaaactataaaatctccttgaacaagaagatggtgttaggaaaaattaaaaaatct
ctttcactaataaaatgatcatgctaacaagaaaaagatcatactaacgtttatggagaatagaatcaactatgaatgggtgtattattaatactaacaagaaaaagattatgctaatgtatatggagaatagaataaactgtgaatgaatgtactattaagacacttttgtgttagatcactgattcaaaactctgtaa
ttactagcttaaaaaaaaaatcatgataacaactttgaaatcacagtataaatgaacaaaaagatgatactagcccaactaaaaaaatgctcacaactttgaaaatacagGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAAG
CCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACA
Intron 10 GCAAGTTTCT ... TTGAGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.43 | 19.9 | 9.1 | 20 |
| A2 | 37.45 | 52.9 | 12.2 | 31 |
| A3 | 40.77 | 39.6 | 11.3 | 26 |
| A4 | 36.49 | 22.9 | 2.9 | 13 |
| A5 | 29.13 | 46.9 | 14.6 | 18 |
| A6 | 28.25 | 149.4 | 19.2 | 57 |
| A7 | 35.8 | 66 | 8.1 | 36 |
| A8 | 35.65 | 69.2 | 5.8 | 38 |
| A9 | 33.18 | 75.9 | 9.6 | 37 |
| A10 | 21.89 | 56 | 10.1 | 15 |
>TRINITY_DN108944_c0_g1_i10 from sample A3 / Example spliced isoformAAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGG
AGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCC
ATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACCGTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGAC
GAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTT
AAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAACCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAAT
TCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCT
GATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTATCATATTGGTCTGTGG
TTTTAGTGCTTTGGTGATAAAGTGCA
>TRINITY_DN108944_c0_g1_i11 from sample A3 / Example unspliced isoform:AAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGG
AGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCC
ATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGgcaagttttttttctcttttttttcatcttcccaaatccaccatgcacataagtgggtggaactatgaacacacaagttacaactgtgaacattcacagttccaacctacctttctgccaggtaatcattgagcatttccatggtgc
ttaaggtttgccattcatctcaatctaagtagcagttgtgaattagccttttgagtatgtgactattaaatttattgaaatactgttgagtgtagGCTGAAATTGTGGATCCAGCTGTTAGAGGAACTCTGAATGTACTTAGATCTTGCAAGAGAAGTCCCTCTGTAAGGCGAGTGGTACTCACATCTTCATCCTCTACC
GTTAGAGCCAGAGACGATTTAGATCCATCTGTACCTCTGGACGAATCCATCTGGAGCTCTGCCCAACTTTGTGAAAAATTTCAGGTACTTTGAAAATATTATCCACCAAATATTTTGCTTTTGATTCCACCAAGGATTTTTTTTTATTGCTCCAAGGAATTCTAGGTACTTTACAGAGTTTTGAGTAAGGGGTATGTTCA
ATTTTGGTTGGTTACTTTCTTTTTATAACTAGCATAGATTTAGTCATTGTTTAATGATTGGGAGGATCACCATTATGTAAGAAGTCTATATGAAAATTCCAGCTTTATTTAGGTTTTTTTGTTTTTCAAAGAAAATATGGTGAGGAGATTCAAAGGATATTTTTCTATGTCTTTTTAATAAATTTCTTGTAACCATAAAC
TAGAGATTTGTTATTTCACACAGAACTAACCAAATATCAAAAAATTATTTGAAGTAAACTCTTAAACTGGATTCATTTTATAAAAAAACATAAAACTTGAATACAAATCTTTTGATCTATCTCCTGCATATGCATAATACCTGAAAGCTTCTGATGAGTCCTCATGCATAATAACTTGAGATGAAAACCTTTTGATCAAT
CTCCCTGCAGGATATCTTGAAAACCTTTTGATCAATCTCCCTGCATGATATCTTGAAACTTTTTGATCAGTCTTCATGCCTAATAACTTCAGTTGTAAACCTTTTAATGGGTCTCCATGCATAATAAAGTTGTAAGCCTTTTAATGGGTCTCCATTCATAATAGATAAAATGGTTAAAATAGAGCAATGCTAATTGTTAT
AGAGGATGATATTGAATTGAAAAACTATTATGTATTTATTTCTATCAAAACCCTCTTTCTGATATTAGATTTAACAGATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAAC
CTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTTAAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAACCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGC
ACAACGTTATCCGCATCTCAACGTTCCCACACAATTCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCAT
AACCTGCATTTTGTTCACAATATTTTTTTGTTTCTGATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCAT
TAACTTTTTCTTTTTTTTATCATATTGGTCTGTGGTTTTAGTGCTTTGGTGATAAAGTGCA
Intron 11 GCTGAAATTG ... AAAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 89.19 | 4 | 21 | 45 |
| A2 | 84.93 | 11 | 56 | 68 |
| A3 | 72.73 | 12 | 43 | 21 |
| A4 | 91.04 | 3 | 24 | 37 |
| A5 | 69.44 | 22 | 51 | 49 |
| A6 | 80.8 | 36 | 159 | 144 |
| A7 | 88.16 | 9 | 70 | 64 |
| A8 | 85.09 | 12 | 72 | 65 |
| A9 | 84.76 | 16 | 80 | 98 |
| A10 | 80.56 | 14 | 60 | 56 |
>TRINITY_DN108944_c0_g1_i17 from sample A3 / Example spliced isoformAAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGG
AGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCC
ATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGATATGGTATGCTCTGGC
>TRINITY_DN108944_c0_g1_i10 from sample A3 / Example unspliced isoform:AAAAGTGTGAAGCGAACAGTTCACTTACTTTCCATCTTATTTTCATGTCTAGCGACCTATTCTGAGCGTGCTCAAAGAATATTTACACACAAGATCAAAGACCATATTGATTGTATTGCATTTTCTTCAATTCTTCTGGTAAACATGGATATGGCTCAAGCCAAAGAGAAGGACAACGTTAGCATAGTGTGCGTGACAGG
AGCAGCAGGTTACTTGGCATCTTGGCTCATCAAGCGTCTCCTCCAACGTGGTTACCATGTGAGGGGAACTGTGCGAGATCCTGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGAGCAAAAGAGAGATTGCAGCTAATGAAAGCTGATCTAATGGACGAGGGAAGCTTCGATGAGATCATCAGAGGCTGCC
ATGGTGTTTTTCACACAGCCTCTCCTGTCGTGGGAGTTAAATCAGATCCCAAGgctgaaattgtggatccagctgttagaggaactctgaatgtacttagatcttgcaagagaagtccctctgtaaggcgagtggtactcacatcttcatcctctaccgttagagccagagacgatttagatccatctgtacctctggac
gaatccatctggagctctgcccaactttgtgaaaaatttcagATATGGTATGCTCTGGCCAAGACTTTAGCTGAGAAAGCAGCATGGGATTTTGCTGAGGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGACCAAGTCTTCCTCGTAACCTGTGTTCGACTGCATCGGATGTCCTTGGCTTGTT
AAAAGGAGAAACGCAGAAATTTGCTATGCATGGACGAATGGGATACGTTCACATTGACGACGTTGCTAGTTGTCACATTCTTGTTTATGAGGAACCCACTGCCAAAGGACGCTACATATGCTCCTCAGCTGTGCTTGAAAATTATGAACTGGGAGCCATCTTAGCACAACGTTATCCGCATCTCAACGTTCCCACACAAT
TCGTGAACGTTTGGGGAGACAGAACTTACTACACTTACGACACCTCGAAGCTGAGAGCACTGGGTTTCGAATTCAAAACCATACAAGAGATGTTCCAGGACTGCGTTGAATCGCTTAAAGAGCAGGGGCACATTTAAATATATCATTGACTTACACAAAAATCATAACCTGCATTTTGTTCACAATATTTTTTTGTTTCT
GATGAGAACTTTCTGCTCCTCATATTAACTGCTTTTTGTTATAGAATTAATCTGGGATGAACGTAATGAAAGTGTTTATATGACACTGTCAAAATAAATTGGATATACACTTGATATATGCTTCTTCAGCACAATGAAAGTGGAATTTTGCTTTTGCTTTCTCATTAACTTTTTCTTTTTTTTATCATATTGGTCTGTGG
TTTTAGTGCTTTGGTGATAAAGTGCA