sp|O82337|AGP16_ARATH ----> Arabinogalactan protein 16

Intron 1 GTTTGTATTA ... CGATTCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	94.15	5.5	87.8	5
A2	91.49	7	71.3	3
A3	93.13	7	91.3	5
A4	94.44	2	32.5	1
A5	90.74	5	46	5
A6	93.81	145.5	2095.5	21.5
A7	92.88	104.5	1301	22.5
A8	94.51	124	2063.3	18
A9	93.49	137.5	1904.5	28.5
A10	92.62	78.5	927.5	7

>TRINITY_DN44259_c0_g1_i2 from sample A6 / Example spliced isoform

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTAGTGAGTATTGTGAGAGTCTGGCACACTTTATTCCTGCGCTCTGCCGGCGTAAGG
ATCTTGTTCCTTGTTCTTTCTTTTCTTGGTATCCGACATCGACATTTCTTCTTGTTATTTTCAGCGATGGCCTTCACGACGGTGTCGGCCGTTGCGCTGCTGATGCTCTGTGTCGCCTTCCTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGA
CCAAGGAATAGCGTACGTTCTCTTATTCATGGCGCTAGCTCTGACCTACCTCATACATCCCCTGGACGCCTTCCCTTTCAATCTTTTCTGAGCTACCGGCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAATAGAGAGAAAGGGCCTGGCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTT
GCAGTGGTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCACTCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGATTCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTG
AGTCCGTCCATTTCTTGAT

>TRINITY_DN44259_c0_g1_i9 from sample A6 / Example unspliced isoform:

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTACGATGGCCTTCTCGACGGTGTCGGCCGTTGCGCT
GCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGACCAAGGAATAGCGTACGTTCTCTTATTCATGGCGCTAGCTCTGACCTACCTCATACATCCCCTGGACGCCTTCCCTTTCAATCTTTTCTGAGCTACCG
GCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAATAGAGAGAAAGGGCCTGGgtttgtattatattagacgcaaccatgtatactggatttaccttagattttgatgtcatgccgggcagatccgagggattaaatttgttttccattgatatttgttctgcatatgtactttcatctgatttatagttattat
tgaccactgctatgcaatctttataagtttcttttaaagacttatcaatgaaagccattgatctaagtctcagtcttctcttactgcgttctctaattcgattattcataaattattttctgacgtgataaattattcatcgattctcagCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTTGCAGTG
GTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCACTCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGATTCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTGAGTCCG
TCCATTTCTTGAT

Intron 2 GTACGTTCTC ... CGATTCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	88.5	12.8	95.5	5
A2	85.22	15	82	3
A3	90.07	13.5	118.5	5
A4	87.06	10.8	68.5	1
A5	95.93	2.8	64.3	5
A6	87.91	266.3	1852.3	21.3
A7	88.38	176.3	1292.3	22.8
A8	89.15	178	1409.5	18
A9	89.47	196.8	1619	29.3
A10	89.95	122.5	1054.8	7

>TRINITY_DN44259_c0_g1_i10 from sample A6 / Example spliced isoform

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTAGTGAGTATTGTGAGAGTCTGGCACACTTTATTCCTGCGCTCTGCCGGCGTAAGG
ATCTTGTTCCTTGTTCTTTCTTTTCTTGGTATCCGACATCGACATTTCTTCTTGTTATTTTCAGCGATGGCCTTCACGACGGTGTCGGCCGTTGCGCTGCTGATGCTCTGTGTCGCCTTCCTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGA
CCAAGGAATAGCCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTTGCAGTGGTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCACTCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGAT
TCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTGAGTCCGTCCATTTCTTGAT

>TRINITY_DN44259_c0_g1_i9 from sample A6 / Example unspliced isoform:

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTACGATGGCCTTCTCGACGGTGTCGGCCGTTGCGCT
GCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGACCAAGGAATAGCgtacgttctcttattcatggcgctagctctgacctacctcatacatcccctggacgccttccctttcaatcttttctgagctaccg
gcgatccgttatccgtttcttgacagaaaagaaaagaaaatagagagaaagggcctgggtttgtattatattagacgcaaccatgtatactggatttaccttagattttgatgtcatgccgggcagatccgagggattaaatttgttttccattgatatttgttctgcatatgtactttcatctgatttatagttattat
tgaccactgctatgcaatctttataagtttcttttaaagacttatcaatgaaagccattgatctaagtctcagtcttctcttactgcgttctctaattcgattattcataaattattttctgacgtgataaattattcatcgattctcagCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTTGCAGTG
GTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCACTCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGATTCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTGAGTCCG
TCCATTTCTTGAT

Intron 3 GTGAGTATTG ... TTATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.08	32	30	121
A2	73.53	45	40	125
A3	79.52	51	26	198
A4	80.83	23	14	97
A5	73.58	28	9	78
A6	82.33	510	487	2377
A7	80.92	358	407	1518
A8	82.55	339	384	1604
A9	82.22	439	455	2030
A10	80.16	338	397	1366

>TRINITY_DN44259_c0_g1_i9 from sample A6 / Example spliced isoform

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTACGATGGCCTTCTCGACGGTGTCGGCCGTTGCGCT
GCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGACCAAGGAATAGCGTACGTTCTCTTATTCATGGCGCTAGCTCTGACCTACCTCATACATCCCCTGGACGCCTTCCCTTTCAATCTTTTCTGAGCTACCG
GCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAATAGAGAGAAAGGGCCTGGGTTTGTATTATATTAGACGCAACCATGTATACTGGATTTACCTTAGATTTTGATGTCATGCCGGGCAGATCCGAGGGATTAAATTTGTTTTCCATTGATATTTGTTCTGCATATGTACTTTCATCTGATTTATAGTTATTAT
TGACCACTGCTATGCAATCTTTATAAGTTTCTTTTAAAGACTTATCAATGAAAGCCATTGATCTAAGTCTCAGTCTTCTCTTACTGCGTTCTCTAATTCGATTATTCATAAATTATTTTCTGACGTGATAAATTATTCATCGATTCTCAGCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTTGCAGTG
GTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCACTCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGATTCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTGAGTCCG
TCCATTTCTTGAT

>TRINITY_DN44259_c0_g1_i4 from sample A6 / Example unspliced isoform:

GGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCTGTCA
AAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTAgtgagtattgtgagagtctggcacactttattcc
tgcgctctgccggcgtaaggatcttgttccttgttctttcttttcttggtatccgacatcgacatttcttcttgttattttcagCGATGGCCTTCTCGACGGTGTCGGCCGTTGCGCTGCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTG
TCCGACGGCACCGCCATCGACCAAGGAATAGCGTACGTTCTCTTATTCATGGCGCTAGCTCTGACCTACCTCATACATCCCCTGGACGCCTTCCCTTTCAATCTTTTCTGAGCTACCGGCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAATAGAGAGAAAGGGCCTGGGTTTGTATTATATTAGACGCAACC
ATGTATACTGGATTTACCTTAGATTTTGATGTCATGCCGGGCAGATCCGAGGGATTAAATTTGTTTTCCATTGATATTTGTTCTGCATATGTACTTTCATCTGATTTATAGTTATTATTGACCACTGCTATGCAATCTTTATAAGTTTCTTTTAAAGACTTATCAATGAAAGCCATTGATCTAAGTCTCAGTCTTCTCTT
ACTGCGTTCTCTAATTCGATTATTCATAAATTATTTTCTGACGTGATAAATTATTCATCGATTCTCAGCTTCCCGGAGCAATAAATCTACCAGCAATGATACTGAATTCTTTGCAGTGGTTAGAATTGTGGCACATGCATATCTGTGAATAGCTGGAGGCGTTAAGTAAGAATATTATAGTTACGCAACAGTACGTCCAC
TCCACCTTCAGAAAATTTCATGCTTTTGCAGATTTGTGACCTTTACCTGCAAAGATTCATCTATAATTCTTTTTAAATTTGATTAAATTCATCTATAATTTTCTTGCTTTTGAGTCCGTCCATTTCTTGAT

Intron 4 GTGAGGATCT ... TTATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.58	20	6	83
A2	87.63	12	12	85
A3	88.59	21	29	163
A4	81.82	12	6	54
A5	91.53	5	9	54
A6	86.97	251	145	1676
A7	86.92	173	152	1150
A8	84.17	240	163	1276
A9	86.19	258	257	1610
A10	87.09	155	145	1046

>TRINITY_DN44259_c0_g1_i8 from sample A6 / Example spliced isoform

TGTGCTCGAGCGAATACACAGCTGGCACAGGCACACACACATAACTTCATCATAGCTGGGTCGGACGGGATTTTGTGTGCCACGTATGCACGTGAGGGAAGATGAGCTCTTGAATGGCGGTATTCCGGTATTTGGAGAAGGCGGTTTGATGGTTTATATTACAGGAGGAGGCGGTGTTTGTGTTTGTATTGTGAGGGCGT
GGCGCACTTTAATCCTGCGCTCCGTTGAAAGATGGCCTTCTCGACAGTGTCTGTTACGGTGCTGATGCTCTCTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGCCAATGCGCAGGCTCCCGCCCCTGCTCCCATGTCCGACGGCACTGCCATCGACCAAGGAATAGCTTGCGTGCTCTTGTTCCTGGCGTTGG
CTCTGACCTATCTCATCCATCCCCTCGACGCCTTCCCTTTCAATCTCTTTTGAGGTTCCGGCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAAGATAGACAGAAAGGGCCTGAATTTGTATTATAGACGGAACTATGTATACTGGATTTACCTTAGATTTTGATGTCATGCCGGGCAGATCCGAGGGATTGAT
TCTGTTTTCCATTGATATTTATTTTGCTTATGTACTTGCATCTGATTTATGGTTATTATTGACCACTTCTATGCAATCTTTATAAATTTATTGAACATTGATCTTCAGTCTGCTCTTATTGCGTTCTTTAGAAGCTGGCTTCCGGCTTTTTCTCAGACGTGGTAAATTATTGATCGATTCTCAGCCTCCCAGGGCAACAA
ATCTATGTGCCATGATAATGAATTCTTCTGCAGTGGTTGGATTTGTGAATAGTCGAAGGCGTTATTAATAAGAATATTATAGTTGCGCAACAGTACCACTCTACCCTCAGAAAAGTTTTCTGCAGATTTCGAGAGATGGTACCCTGAGTAAATAATTTAATTCAAGGGTTAGAAGAGTTTGTTCAGTGTTGCATATCTCA
CTCTATATTTCTTGTCCAGTCAAATTTATGCATTACCACCATTTCACCGAAGACGAATAAATAATTTAATTCAAGGGTTGAAGAGTTAGTTCACTGTATGTATCTTGTCCAGTCAAATTTATTCTTTACCGCCATTTCACCCAAGATTGTGCAATCTTTGTACAACAAATTTAGTAACCCAGAAAGTTTTTACCACCATT
TCACCCAAG

>TRINITY_DN44259_c0_g1_i1 from sample A6 / Example unspliced isoform:

TGTGCTCGAGCGAATACACAGCTGGCACAGGCACACACACATAACTTCATCATAGCTGGGTCGGACGGGATTTTGTGTGCCACGTATGCACGTGAGGGAAGATGAGCTCTTGAATGGCGGTATTCCGGTATTTGGAGAAGGCGGTTTGATGGTTTATATTACAGGAGGAGGCGGTGTTTGTGTTTGTATTGTGAGGGCGT
GGCGCACTTTAATCCTGCGCTCCGTTGAAgtgaggatcttgttcttctcttctttcttttcttggtatccgatattgacatttcttctgttattttcagAGATGGCCTTCTCGACAGTGTCTGTTACGGTGCTGATGCTCTCTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGCCAATGCGCAGGCTCCCGCC
CCTGCTCCCATGTCCGACGGCACTGCCATCGACCAAGGAATAGCTTGCGTGCTCTTGTTCCTGGCGTTGGCTCTGACCTATCTCATCCATCCCCTCGACGCCTTCCCTTTCAATCTCTTTTGAGGTTCCGGCGATCCGTTATCCGTTTCTTGACAGAAAAGAAAAGAAAAGATAGACAGAAAGGGCCTGAATTTGTATTA
TAGACGGAACTATGTATACTGGATTTACCTTAGATTTTGATGTCATGCCGGGCAGATCCGAGGGATTGATTCTGTTTTCCATTGATATTTATTTTGCTTATGTACTTGCATCTGATTTATGGTTATTATTGACCACTTCTATGCAATCTTTATAAATTTATTGAACATTGATCTTCAGTCTGCTCTTATTGCGTTCTTTA
GAAGCTGGCTTCCGGCTTTTTCTCAGACGTGGTAAATTATTGATCGATTCTCAGCCTCCCAGGGCAACAAATCTATGTGCCATGATAATGAATTCTTCTGCAGTGGTTGGATTTGTGAATAGTCGAAGGCGTTATTAATAAGAATATTATAGTTGCGCAACAGTACCACTCTACCCTCAGAAAAGTTTTCTGCAGATTTC
GAGAGATGGTACCCTGAGTAAATAATTTAATTCAAGGGTTAGAAGAGTTTGTTCAGTGTTGCATATCTCACTCTATATTTCTTGTCCAGTCAAATTTATGCATTACCACCATTTCACCGAAGACGAATAAATAATTTAATTCAAGGGTTGAAGAGTTAGTTCACTGTATGTATCTTGTCCAGTCAAATTTATTCTTTACC
GCCATTTCACCCAAGATTGTGCAATCTTTGTACAACAAATTTAGTAACCCAGAAAGTTTTTACCACCATTTCACCCAAG