sp|Q39224|SRG1_ARATH ----> Protein SRG1
Intron 1 GTTTGTGAAG ... CTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 1 | 0 | 1 |
| A2 | 37.5 | 5 | 5 | 1 |
| A3 | 36.36 | 7 | 7 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 42.86 | 2 | 2 | 1 |
| A7 | 29.41 | 12 | 4 | 6 |
| A8 | 42.86 | 2 | 1 | 2 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 42.86 | 2 | 2 | 1 |
>TRINITY_DN39570_c0_g1_i2 from sample A7 / Example spliced isoformTTAATCCTCCATCAATGACATGTAGGTTTACCTTAATCCTCCATCAATGACATGTAGGTTTACCTTAATCCTCCATCAATGACATGTGGATGCTCAACAGGTTCAAACAATATAATTAACAACGATGGCTGCGTTGATGTGCTTAAAACAATGTGATTTTATCACAATTGTTACGCCTGTCCTTTCAAAGTTACCATAGT
CAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTGCAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTTATCAAGACCCAGGCTGTG
CAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAACATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGGTCATGAATCATGGCGTCCCGCA
CTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCTGCGGAGGAGAAAGAAAAGTATGCGGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATTTGACTGTGTGGCCATCTGTGCCTTCTGA
ATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCAAAGATTTTAAGTTTAATTGCTGAGAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGATCTTGTTCTTGGCATCAGCCCACATGCAG
ATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCACGTCAGAAAAGATGACAAATGGGTGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGCTGTGACAAACAAAGACAAGTCCAGACTA
TCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCACCAGAGCTGATTGATGAAAGCCATCCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTGTTTGAAACATGCTTCTCTGTCAAGAACA
ACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATTTAATTTCTGGTTTGTTAGGTTCTTTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGAGACTGGTAAATTTATCTCAATTGCAATA
ATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTATCAATAATGCTAGTACAGTCTATTTTTTATAAACGC
>TRINITY_DN39570_c0_g1_i1 from sample A7 / Example unspliced isoform:TTAATCCTCCATCAATGACATGTAGGTTTACCTTAATCCTCCATCAATGACATGTAGGTTTACCTTAATCCTCCATCAATGACATGTGGATGCTCAACAGGTTCAAACAATATAATTAACAACGATGGCTGCGTTGATGTGCTTAAAACAATGTGATTTTATCACAATTGTTACGCCTGTCCTTTCAAAGTTACCATAGT
CAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTGCAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTTATCAAGACCCAGGCTGTG
CAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAACATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGgtttgtgaagaatggggcttctt
tcagGTCATGAATCATGGCGTCCCGCACTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCTGCGGAGGAGAAAGAAAAGTATGCGGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATTT
GACTGTGTGGCCATCTGTGCCTTCTGAATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCAAAGATTTTAAGTTTAATTGCTGAGAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGATC
TTGTTCTTGGCATCAGCCCACATGCAGATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCACGTCAGAAAAGATGACAAATGGGTGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGCT
GTGACAAACAAAGACAAGTCCAGACTATCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCACCAGAGCTGATTGATGAAAGCCATCCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTGT
TTGAAACATGCTTCTCTGTCAAGAACAACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATTTAATTTCTGGTTTGTTAGGTTCTTTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGAG
ACTGGTAAATTTATCTCAATTGCAATAATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTATCAATAATGCTAGTACAGTCTATTTTTTATAAACGC
Intron 2 GTTTGTGAAG ... TGTACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 0 | 2 |
| A2 | 28.57 | 5 | 4 | 0 |
| A3 | 30 | 7 | 6 | 0 |
| A4 | 100 | 0 | 0 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 20 | 2 | 1 | 0 |
| A7 | 7.69 | 12 | 0 | 2 |
| A8 | 55.56 | 2 | 1 | 4 |
| A9 | 100 | 0 | 2 | 1 |
| A10 | 20 | 2 | 1 | 0 |
>TRINITY_DN41072_c4_g2_i3 from sample A8 / Example spliced isoformTTTCAAAGTTACCATAGTCAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTGCAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTT
ATCAAGACCCAGGCTGTGCAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAACATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGGTCAT
GAATCATGGCGTCCCGCACTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCTGCGGAGGAGAAAGAAAAGTATGCGGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATTTGACTGTGTG
GCCATCTGTGCCTTCTGAATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCAAAGATTTTAAGTTTAATTGCTGAGAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGATCTTGTTCTTG
GCATCAGCCCACATGCAGATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCACGTCAGAAAAGATGACAAATGGGTGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGCTGTGACAAAC
AAAGACAAGTCCAGACTATCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCACCAGAGCTGATTGATGAAAGCCATCCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTGTTTGAAACAT
GCTTCTCTGTCAAGAACAACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATTTAATTTCTGGTTTGTTAGGTTCTTTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGAGACTGGTAAA
TTTATCTCAATTGCAATAATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTATCAATAATGCTAGTACAGTCA
>TRINITY_DN41072_c4_g2_i2 from sample A8 / Example unspliced isoform:TTTCAAAGTTACCATAGTCAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTGCAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTT
ATCAAGACCCAGGCTGTGCAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAACATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGgtttg
tgaagaatggggcttctttcaggtagatacgtactgtttaatgcctattaatcaagaaagtagataagaagtatcactttactatgatccggtgtactgcagGTCATGAATCATGGCGTCCCGCACTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCTGCGGAGGAGAAAGAAAAGTATGC
GGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATTTGACTGTGTGGCCATCTGTGCCTTCTGAATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCAAAGATTTTAAGTTTAATTGCTGA
GAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGATCTTGTTCTTGGCATCAGCCCACATGCAGATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCACGTCAGAAAAGATGACAAATGGG
TGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGCTGTGACAAACAAAGACAAGTCCAGACTATCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCACCAGAGCTGATTGATGAAAGCCAT
CCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTGTTTGAAACATGCTTCTCTGTCAAGAACAACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATTTAATTTCTGGTTTGTTAGGTTCT
TTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGAGACTGGTAAATTTATCTCAATTGCAATAATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTATCAATAATGCTAGTACAGTCA
Intron 3 GTAGATACGT ... TGTACTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 1 | 1 | 2 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | 100 | 0 | 2 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 14.29 | 6 | 0 | 2 |
| A8 | 63.64 | 2 | 3 | 4 |
| A9 | 100 | 0 | 2 | 1 |
| A10 | 0 | 1 | 0 | 0 |
>TRINITY_DN34650_c0_g1_i4 from sample A9 / Example spliced isoformTGACATGTGGATGCTCAACAGGTTCAAACAATATAATTAACAACGATGGCTGCGTTGATGTGCTTAAAACAATGTGATTTTATCACAATTGTTACGCCTGTCCTTTCAAAGTTACCATAGTCAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTG
CAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTTATCAAGACCCAGGCTGTGCAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAA
CATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGGTTTGTGAAGAATGGGGCTTCTTTCAGGTCATGAATCATGGCGTCCCGCACTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCT
GCGGAGGAGAAAGAAAAGTATGCGGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATTTGACTGTGTGGCCATCTGTGCCTTCTGAATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCA
AAGATTTTAAGTTTAATTGCTGAGAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGATCTTGTTCTTGGCATCAGCCCACATGCAGATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCA
CGTCAGAAAAGATGACAAATGGGTGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGCTGTGACAAACAAAGACAAGTCCAGACTATCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCAC
CAGAGCTGATTGATGAAAGCCATCCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTGTTTGAAACATGCTTCTCTGTCAAGAACAACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATT
TAATTTCTGGTTTGTTAGGTTCTTTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGAGACTGGTAAATTTATCTCAATTGCAATAATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTAT
CAATAATGCTAGTACAGTCTATTTTTTATAAACGCTTTTTTGTTTG
>TRINITY_DN34650_c0_g1_i1 from sample A9 / Example unspliced isoform:TGACATGTGGATGCTCAACAGGTTCAAACAATATAATTAACAACGATGGCTGCGTTGATGTGCTTAAAACAATGTGATTTTATCACAATTGTTACGCCTGTCCTTTCAAAGTTACCATAGTCAACACCAACTGACAGCCCTAAATGTATCTGTGTACATGATGTCTTGAGCCATGGGATCTGTGTATATGATGGCACTTG
CAGGAGGAGCTTGAACGTCGCACAAATTTGAAAAATGGGTTCAGTTGAAGAAGAGGCTTCCCTGAGATATAATGCCCCGAACACCAAGTGGGGTAATTCTCTTATCAAGACCCAGGCTGTGCAAGAAATTGCAGAAAAACAACCCCAAGGAGTTCCAGAGAGGTACATAAGATCAGATGAAGAGAGACCCACAGCAACAA
CATTACTATCTGATGACCAGGTGGGCATCCCTGTCATTGACATGGCCAAGCTCTCAGGAGATCTACAGAAACAACAAGAGATGGCTAAGATCGGCAAGGTTTGTGAAGAATGGGGCTTCTTTCAGgtagatacgtactgtttaatgcctattaatcaagaaagtagataagaagtatcactttactatgatccggtgtac
tgcagGTCATGAATCATGGCGTCCCGCACTCTTTAATAGATGACATAACGAGAATTGGAAAGGAGTTTTTTCAACTTCCTGCGGAGGAGAAAGAAAAGTATGCGGTCAGAGATTATCAGGGTTATGGCCAGATCAAGAGCAAAAGCTGGATTGGGGTGACTTGCTGGGTTTGATAATATCTCCCCAGCAATCCAGGAATT
TGACTGTGTGGCCATCTGTGCCTTCTGAATTCAGACAGATCGTGGATGCATACAATATTGAGATTAAAAAACTTGCTGCAAAGATTTTAAGTTTAATTGCTGAGAATTTACACCTCAAGCCTGATTACTTTGAGCAGTGCTTTGGAAACACCTATCAAAAGATGAGAATGAATTACTATCCAGCATGCCCAAGACCAGAT
CTTGTTCTTGGCATCAGCCCACATGCAGATGGAAGTGGCATTACACTGTTGCTGCAGAACAATGAAGTGGAAGGCTTGCACGTCAGAAAAGATGACAAATGGGTGGCTGTCCAACCCATTCCTTATGCTCTAGTCATCAACATTGGCTATTTGTTAGAGGTGATGACAAATGGGAGATACAAGAGCATAGAGCATAGAGC
TGTGACAAACAAAGACAAGTCCAGACTATCCATTGCCATCTTTTACAGTCCAGGATTTGAGGCAGAGATAAGCCCTGCACCAGAGCTGATTGATGAAAGCCATCCCTGCTTGTTCAAAAAATTTATACATGAAGATCACATTAAATATTACATGTCTCGCAAGTTGGAGGGAAAGGCATCATTCTATGAGTCAGCAGGTG
TTTGAAACATGCTTCTCTGTCAAGAACAACTGCATCGGGAAGAAGCTTGCAGATCCAGCTAGTGAGGGATCTGAAAAATTTAATTTCTGGTTTGTTAGGTTCTTTGAACAACTGTATCGGGAAGAAGCTTGCAGATCTAGCTCGTGAGGGATCTGGAAAATTTAATTTCTGGTTTGTTAGGTTCTTTTCTGTTTTACAGA
GACTGGTAAATTTATCTCAATTGCAATAATTTTGAACTCATGGCAGAAGACAGTAGACCTTTGTTGTTGCTCTCAGTTATCAATAATGCTAGTACAGTCTATTTTTTATAAACGCTTTTTTGTTTG