sp|Q5VRY0|RH39_ORYSJ ----> DEAD-box ATP-dependent RNA helicase 39
Intron 1 GTAAGCTCTT ... ATTGTGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.89 | 32 | 10 | 16 |
| A2 | 27.54 | 25 | 11 | 8 |
| A3 | 23.33 | 23 | 5 | 9 |
| A4 | 24.44 | 17 | 3 | 8 |
| A5 | 33.33 | 3 | 3 | 0 |
| A6 | 9.09 | 10 | 1 | 1 |
| A7 | 16.67 | 45 | 5 | 13 |
| A8 | 16.48 | 38 | 3 | 12 |
| A9 | 13.89 | 31 | 5 | 5 |
| A10 | 17.65 | 49 | 12 | 9 |
>TRINITY_DN108446_c0_g1_i2 from sample A2 / Example spliced isoformCACGAATAAACCAAAACTCCATAACTCTTTCCATTCATTTCTGCTCGTGAAGTCTAGAAACCTAAGAAAGCTTGCTTGTTCCAAAGGTAGGCGCGAGTAAATTGAACGGATAAGAGCTAAAAGCTCTTTATTTTCGTCTAATGGATCGATGGGAAGCCATGGCTGAAAAAAGCCGAAGCTTTGATTGAGAAACGCTGAGT
GAAGGGTTTTGGCAGGGTTTAAGGCAAGATGGGGGGAAGGATGATTTTTCATCTTTCATCGGCATCATCAACCTACTGTGCATCAGTTCCTATATTGTTTAGGCCTCCCTGTTTTGCAGGCCGCAGGGTTAAGGCAGGGTTTAAGGCGATGTGTTCCTCGGCCGCTACAGTGGATAAACCACCAGAGCAATCTCGCGTGA
TTTCGTTACTGGAAAAGCTAAGGTCCAGGCATAATAGTAAGAATGCCCAGAATGTGGCAAAGCTGCCGTCTAAGAGAACCACTAACTCTCAAAAGGAAACGAAGAGTCCCACTGTTTCTTCCTTTGCCGAGATGGAACTCGCACCGGAGATAATGAGCGCAATTAAGGAATTGAATATATCTGTTCCCACTGAGGTGCAG
TGCCTTGGAATACCAGCTATACTCGGAGGACAGAGCATTGTTTTAGCCTCGCACACTGGCTCCGGCAAAACTCTCGCCTACATGCTTCCTTTGGTTCAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTT
CCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAGATCAACAATGATCAGTGGTGGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTCTTAGATGAAGCAGACACCAT
GTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGTGCTGCAAAGACTGGTGATCAAGGTTTTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGG
AGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAGATCAACAATGATCAGTGGTGGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTAT
GTGGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGTGCTGCAAAGACTGGTGATCAAGGTTTTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGGCTGTCCAAAAGCTACTTGATGAAGAATTTCAAGGGATAGTCCATATACGTACATC
AACATTACACAAGAAGATTGCATCGGCACACCATGATTTTGTAAAGGTTTCAGGAAGTGAAAACAAGCTTGAATCACTCTTACAGGTTTTGGAACCAAGTCTTGCAAAGGGTAACAGAGTCATGGTCTTTTGTAATACCTTGGACTCCAGTCGTGCAGTTGATCATTTCCTGAATGACAATCAATTACTCACAGTGAATT
ATCATGGGGAAGTACCGGCAGAAGAGCGAGTTGAGAATCTCAATAAGTTCAAGAGTGATGATGGTGACTGTCCCACGTTGGTGTGCACAGACTTGGCAGCTCGAGGGCTTGATTTAGCTGTTGATCATGTTATTATGTTTGATTTTCCCCGTACTCCAATAGATTACCTACATCGGACTGGAAGGACTGCCCGGATGGGA
GCTAAAGGTAAGGTGACAAGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATAAAGAAACATATGAAGCAATGAAACAAAAACCGATCCAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTT
TAAAAGTCAGAGGACTGGACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAAATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAAGAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGC
AGACTTCTGTAGTAAATTCCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGTAGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGAAAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGT
AGGACTTTCTTAAGCAACACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAGCTTAATAGGACATATTCAAGCAAGAAAACCATGAGCAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTA
AATATTTAAATGGAATATTCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGATTTTCACGGGTG
>TRINITY_DN108446_c0_g1_i1 from sample A2 / Example unspliced isoform:ATTTTCTGTAGCCAGTAATGATCCGCTCCATATTTTAGCTATGTTGTACTTGATGCTGATGTTGTTGCGAACTGGCACTTGCAGGACCTTGTGTCCTTGATCTCATTTTCAGTGATCGAAAACTCAGTAATTTGTCCATAAATGGTTATAAACATTGTTTGATTCTAATATATCGTGTCCATGACATAGAATAGAAGTTG
AATTAAAGGATAGCGGGCCAGTGTAATTCCGTGGGTTGATTGATCTACCTTGAAACCAGAGACCCGGTTTTCTGTGTTCACAAGAGAAATATTGTTGTGGATGTTGCTAGTCAATTGAGGAAATTCTTCTTTATAAATACAGCTTACCAGTTGTAATGATTGTATATTTGGCTTTTTATGTGTTACTGCCTGGGTGCCAT
TGGCTTGCCCAACCATAATTATAACGAAATTTTTTTGCCCAATAATCTCACATTTTCTACAGTGATTGATTGGCTAAATGGACAGGGTTATTGCTGTTGTGTTTACATACTGCTTATTGAAATGTTGTAGTATTGCTATTTTTTCCTCAAAAGATTAAATTGGATGCATTTCCAGTACTTTTTGTTGTTTATATCAACCA
ACACATGGTTTACACAAATGTGACGGTATTTATGTGGACAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAGATCAACAATGATCAGTGGT
GGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGT
GCTGCAAAGACTGGTGATCAAGGTTTTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAG
ATCAACAATGATCAGTGGTGGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTATGTGgtaagctcttcttccatgaaaaacctcttttaaggtggctatcatgccaacactt
gaagattgaaatagttttcattcctatgaaaatctcttaatggttcaatagaactgcgtgatggtttgttccctattcgatgacattgtgctagGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGTGCTGCAAAGACTGGTGATCAAGGTT
TTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGGCTGTCCAAAAGCTACTTGATGAAGAATTTCAAGGGATAGTCCATATACGTACATCAACATTACACAAGAAGATTGCATCGGCACACCATGATTTTGTAAAGGTTTCAGGAAGTGAAAACAAGCTTGAATCACTCTTACAGGTTTTGGAACCAAGTCTTGCAAAG
GGTAACAGAGTCATGGTCTTTTGTAATACCTTGGACTCCAGTCGTGCAGTTGATCATTTCCTGAATGACAATCAATTACTCACAGTGAATTATCATGGGGAAGTACCGGCAGAAGAGCGAGTTGAGAATCTCAATAAGTTCAAGAGTGATGATGGTGACTGTCCCACGTTGGTGTGCACAGACTTGGCAGCTCGAGGGCT
TGATTTAGCTGTTGATCATGTTATTATGTTTGATTTTCCCCGTACTCCAATAGATTACCTACATCGGACTGGAAGGACTGCCCGGATGGGAGCTAAAGGTAAGGTGACAAGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATA
AAGAAACATATGAAGCAATGAAACAAAAACCGATCCAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTTTAAAAGTCAGAGGACTGGACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAA
ATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAAGAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGCAGACTTCTGTAGTAAATTCCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGT
AGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGAAAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGTAGGACTTTCTTAAGCAACACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAG
CTTAATAGGACATATTCAAGCAAGAAAACCATGAGCAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTAAATATTTAAATGGAATATTCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGAT
TTTCACGGGTG
Intron 2 GCAAGATTTT ... CCTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.02 | 27 | 4 | 9 |
| A2 | 12.4 | 42.5 | 0 | 6 |
| A3 | 12 | 29.5 | 0 | 4 |
| A4 | 18.7 | 30.5 | 0 | 7 |
| A5 | 28.61 | 20 | 0 | 8 |
| A6 | 29.52 | 12 | 0 | 5 |
| A7 | 27.64 | 102.5 | 0 | 39 |
| A8 | 25.92 | 106 | 0 | 37 |
| A9 | 18.12 | 95.5 | 0 | 21 |
| A10 | 18.15 | 122 | 0 | 27 |
>TRINITY_DN38009_c0_g1_i5 from sample A8 / Example spliced isoformTATTAGTCTTTTAAGTATTCTTACACTGTAAAGTGTAAACATATCACTTCAAATGCTTTGCAGTAGCTCAAACATTCATCATGATTGGGCTTGATTTAGCTGTTGATCATGTTATTATGTTTGATTTTCCCCGTACTCCAATAGATTACCTACATCGGACTGGAAGGACTGCCCGGATGGGAGCTAAAGGTAAGGTGACA
AGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATAAAGAAACATATGAAGCAATGAAACAAAAACCGATCCAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTTTAAAAGTCAGAGGACTGG
ACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAAATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAAGAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGCAGACTTCTGTAGTAAATT
CCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGTAGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGAAAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGTAGGACTTTCTTAAGCAAC
ACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAGCTTAATAGGACATATTCAAGCAAGAAAACCATGAGCAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTAAATATTTAAATGGAATAT
TCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGATTTTCATGGGTGTCAAATGCATTTGTCACTCTTAACCAGTTGTATTCCTGTTTTGCATTTTTTGTTACTTTCCAAGCATGTACTTTAATGACTGCTAGAATATCGTGAAA
TTCTGATTTTGTTTGTCAACATTATTCAATCTCAATATACTTTCCAGTGAGG
>TRINITY_DN38009_c0_g1_i1 from sample A8 / Example unspliced isoform:ACTGCCCGGATGGGAGCTAAAGgcaagattttttttttttgcaatctggttttcatttcattgctcctgctattattttcagtattttggacagcgctgaaaatgacttccaagcaaggtaggaagagaacagcaataacagaaaggatagggaaagtatcgattgagagaagcaccattgcttttatttttatgtcata
tttttttacctctaaccataggtttttgacacattgacctttgaggaatgacccctcttgcagGTAAGGTGACAAGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATAAAGAAACATATGAAGCAATGAAACAAAAACCGATC
CAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTTTAAAAGTCAGAGGACTGGACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAAATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAA
GAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGCAGACTTCTGTAGTAAATTCCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGTAGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGA
AAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGTAGGACTTTCTTAAGCAACACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAGCTTAATAGGACATATTCAAGCAAGAAAACCATGAG
CAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTAAATATTTAAATGGAATATTCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGATTTTCATGGGTGTCAAATGCATTTGTCACTCTTAAC
CAGTTGTATTCCTGTTTTGCATTTTTTGTTACTTTCCAAGCATGTACTTTAATGACTGCTAGAATATCGTGAAATTCTGATTTTGTTTGTCAACATTATTCAATCTCAATATACTTTCCAGTGAGG
Intron 3 GTATGTGGTA ... ATTGTGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.5 | 38 | 10 | 16 |
| A2 | 29.7 | 22.5 | 11 | 8 |
| A3 | 22.02 | 28.5 | 7 | 9 |
| A4 | 24.44 | 17 | 3 | 8 |
| A5 | 33.33 | 3 | 3 | 0 |
| A6 | 7.42 | 12.5 | 1 | 1 |
| A7 | 15.93 | 47.5 | 5 | 13 |
| A8 | 16.51 | 43 | 5 | 12 |
| A9 | 13.34 | 32.5 | 5 | 5 |
| A10 | 18.03 | 50 | 13 | 9 |
>TRINITY_DN108446_c0_g1_i1 from sample A2 / Example spliced isoformATTTTCTGTAGCCAGTAATGATCCGCTCCATATTTTAGCTATGTTGTACTTGATGCTGATGTTGTTGCGAACTGGCACTTGCAGGACCTTGTGTCCTTGATCTCATTTTCAGTGATCGAAAACTCAGTAATTTGTCCATAAATGGTTATAAACATTGTTTGATTCTAATATATCGTGTCCATGACATAGAATAGAAGTTG
AATTAAAGGATAGCGGGCCAGTGTAATTCCGTGGGTTGATTGATCTACCTTGAAACCAGAGACCCGGTTTTCTGTGTTCACAAGAGAAATATTGTTGTGGATGTTGCTAGTCAATTGAGGAAATTCTTCTTTATAAATACAGCTTACCAGTTGTAATGATTGTATATTTGGCTTTTTATGTGTTACTGCCTGGGTGCCAT
TGGCTTGCCCAACCATAATTATAACGAAATTTTTTTGCCCAATAATCTCACATTTTCTACAGTGATTGATTGGCTAAATGGACAGGGTTATTGCTGTTGTGTTTACATACTGCTTATTGAAATGTTGTAGTATTGCTATTTTTTCCTCAAAAGATTAAATTGGATGCATTTCCAGTACTTTTTGTTGTTTATATCAACCA
ACACATGGTTTACACAAATGTGACGGTATTTATGTGGACAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAGATCAACAATGATCAGTGGT
GGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGT
GCTGCAAAGACTGGTGATCAAGGTTTTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAG
ATCAACAATGATCAGTGGTGGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTATGTGGTAAGCTCTTCTTCCATGAAAAACCTCTTTTAAGGTGGCTATCATGCCAACACTT
GAAGATTGAAATAGTTTTCATTCCTATGAAAATCTCTTAATGGTTCAATAGAACTGCGTGATGGTTTGTTCCCTATTCGATGACATTGTGCTAGGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGTGCTGCAAAGACTGGTGATCAAGGTT
TTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGGCTGTCCAAAAGCTACTTGATGAAGAATTTCAAGGGATAGTCCATATACGTACATCAACATTACACAAGAAGATTGCATCGGCACACCATGATTTTGTAAAGGTTTCAGGAAGTGAAAACAAGCTTGAATCACTCTTACAGGTTTTGGAACCAAGTCTTGCAAAG
GGTAACAGAGTCATGGTCTTTTGTAATACCTTGGACTCCAGTCGTGCAGTTGATCATTTCCTGAATGACAATCAATTACTCACAGTGAATTATCATGGGGAAGTACCGGCAGAAGAGCGAGTTGAGAATCTCAATAAGTTCAAGAGTGATGATGGTGACTGTCCCACGTTGGTGTGCACAGACTTGGCAGCTCGAGGGCT
TGATTTAGCTGTTGATCATGTTATTATGTTTGATTTTCCCCGTACTCCAATAGATTACCTACATCGGACTGGAAGGACTGCCCGGATGGGAGCTAAAGGTAAGGTGACAAGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATA
AAGAAACATATGAAGCAATGAAACAAAAACCGATCCAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTTTAAAAGTCAGAGGACTGGACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAA
ATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAAGAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGCAGACTTCTGTAGTAAATTCCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGT
AGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGAAAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGTAGGACTTTCTTAAGCAACACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAG
CTTAATAGGACATATTCAAGCAAGAAAACCATGAGCAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTAAATATTTAAATGGAATATTCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGAT
TTTCACGGGTG
>TRINITY_DN108446_c0_g1_i1 from sample A2 / Example unspliced isoform:ATTTTCTGTAGCCAGTAATGATCCGCTCCATATTTTAGCTATGTTGTACTTGATGCTGATGTTGTTGCGAACTGGCACTTGCAGGACCTTGTGTCCTTGATCTCATTTTCAGTGATCGAAAACTCAGTAATTTGTCCATAAATGGTTATAAACATTGTTTGATTCTAATATATCGTGTCCATGACATAGAATAGAAGTTG
AATTAAAGGATAGCGGGCCAGTGTAATTCCGTGGGTTGATTGATCTACCTTGAAACCAGAGACCCGGTTTTCTGTGTTCACAAGAGAAATATTGTTGTGGATGTTGCTAGTCAATTGAGGAAATTCTTCTTTATAAATACAGCTTACCAGTTGTAATGATTGTATATTTGGCTTTTTATGTGTTACTGCCTGGGTGCCAT
TGGCTTGCCCAACCATAATTATAACGAAATTTTTTTGCCCAATAATCTCACATTTTCTACAGTGATTGATTGGCTAAATGGACAGGGTTATTGCTGTTGTGTTTACATACTGCTTATTGAAATGTTGTAGTATTGCTATTTTTTCCTCAAAAGATTAAATTGGATGCATTTCCAGTACTTTTTGTTGTTTATATCAACCA
ACACATGGTTTACACAAATGTGACGGTATTTATGTGGACAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAGATCAACAATGATCAGTGGT
GGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGT
GCTGCAAAGACTGGTGATCAAGGTTTTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGCTTTTAAGGAAAGATGAAGGTGAAATAGGCATGCAAACAAAGCCTAAAAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGGGAGCTTTCTGAGCAGGTTTTCCATGTAGCTAAGTCTATATCCCATCGTGCACGGTTTAG
ATCAACAATGATCAGTGGTGGATGCCCCATGAAACCTCAGGAAAATGCTCTAAACAATCCACTTGAGATAGTGGTTGGCACACCGGGAAGGTTGCTTCAGCATGTTACTGAGGGAAATATATTCTATGGTGATATCAAgtatgtggtaagctcttcttccatgaaaaacctcttttaaggtggctatcatgccaacactt
gaagattgaaatagttttcattcctatgaaaatctcttaatggttcaatagaactgcgtgatggtttgttccctattcgatgacattgtgctagGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGGCCTGACCTTCGCAAGTTTCTAAATCCACTGCGAAACCGTGCTGCAAAGACTGGTGATCAAGGTT
TTCAGTCTGTTTTAGTGACTGCAACCATCACAAAGGCTGTCCAAAAGCTACTTGATGAAGAATTTCAAGGGATAGTCCATATACGTACATCAACATTACACAAGAAGATTGCATCGGCACACCATGATTTTGTAAAGGTTTCAGGAAGTGAAAACAAGCTTGAATCACTCTTACAGGTTTTGGAACCAAGTCTTGCAAAG
GGTAACAGAGTCATGGTCTTTTGTAATACCTTGGACTCCAGTCGTGCAGTTGATCATTTCCTGAATGACAATCAATTACTCACAGTGAATTATCATGGGGAAGTACCGGCAGAAGAGCGAGTTGAGAATCTCAATAAGTTCAAGAGTGATGATGGTGACTGTCCCACGTTGGTGTGCACAGACTTGGCAGCTCGAGGGCT
TGATTTAGCTGTTGATCATGTTATTATGTTTGATTTTCCCCGTACTCCAATAGATTACCTACATCGGACTGGAAGGACTGCCCGGATGGGAGCTAAAGGTAAGGTGACAAGCCTAGTTACAAAGAAGGATATCAATCTAGCAAGTCAAATTGAAGAGGCTCTAAGAAAAAATGAGAGCTTGGAGGAACTTACAACTAATA
AAGAAACATATGAAGCAATGAAACAAAAACCGATCCAGAAAAAAGGGAAGGAAAATGCAAAGCCTAAAGAGAGATCATCTGCAAAGGGCTTTAAAAGTCAGAGGACTGGACGTCCTCTGGTATCAAAGATTGGTTCTAAGGGAATGGCAAATTCTGTACCAAAGAAGTATAAACGTATTTCAACTGCACAGAAGGTCAAA
ATGGTAAAAGTTTCCTCGACAGGTTCCAAGGAAAAGAAGACACTTGACCCTAAAAGGTTAGGAGGCAAACCTAAAGTCCAGAGGACTGGGCAGACTTCTGTAGTAAATTCCACAAGGAAGCAAACTGATGGACAGAAAAGGGTAAAAGACAGGGCAAAGGTATGGAAGTCTGAGCAAGCATTGACATCTAGGCTTTCTGT
AGTTGGCTTTAAGGGGAGGCAAACATCTGGAGAGAAAAAGGGAAAAGGTGCAGTGAATATAAAATCCTAGCTTATGTGATCTGCCTTCAGTAGGACTTTCTTAAGCAACACACTGCCACATTGGGCTGGGGTGATCTTTGGCTCAGAGAAGAATGGAATAGTGAAAGAAGAATTATGTACAGACGTCTGCACTTTTCGAG
CTTAATAGGACATATTCAAGCAAGAAAACCATGAGCAAGTGTTGGAATATGACATGTTGACCAAAAGGGATTGTCTTCGGATCTAGACCTAAATATTTAAATGGAATATTCTCGTTTTGTAAATATTCATTTATCATTCTCTGAATATATGCACTATTGAAAAATTTTGAGGGCTCATTGAATCTGAAAGGGAAACTGAT
TTTCACGGGTG