sp|Q9C9C8|MY122_ARATH ----> Transcription factor MYB122

Intron 1 GTAAGTAGTG ... GGTAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.05	51.7	59.8	69.2
A2	51.35	21.2	29.8	13.7
A3	40.54	47.2	29.7	32.3
A4	55.05	16.7	9.6	27.1
A5	67.45	6.6	11.5	12.7
A6	18.34	120.1	19.9	32.6
A7	16.26	286.4	62	44.2
A8	16.13	323.5	56.7	64.9
A9	14.86	255.8	39	46.3
A10	13.98	195.3	29.2	31.3

>TRINITY_DN119864_c4_g1_i2 from sample A2 / Example spliced isoform

CAAGATCGTGATCGCGTGGAGATCATCAGTCTAAAGAAGATTCATGCCAACTGGAGGAGATCACTCATGCCAACCCACGAAAAGGAGATCAAAGAAAGGAAAGAAAACAGAACAAATTTCATAATGCAGCACATCGCAACTATTCTGTTGTTAAATGAATATGTCACGTCATCGATAGTGTACAGATGTGCTGAGTAGGG
TGTCAGCCGAATAGCTTCCTTACTACGACAACTAAATATGGCGGCAGTGTAATAGAGTAAGCTAAATTCTAGACAGTTTGTACCAAGAATTTTTTCGATGAAAATCTAGCTGAAATTGCTTCAATGATAGTTTTGGATTGCTAAAATTGTATAATCGAGGTGCACCAATGGTAATCTACCAAAATTGCAATTCGAACAAC
TCAAATTGTAGTTTCAGCAATTTCCC

>TRINITY_DN119864_c4_g1_i3 from sample A2 / Example unspliced isoform:

GGGACCCAGTTGATGAATTGTAGGAATGATCAAGGCCATTTATGTTTCCCATAGGAACGTCCAATATCTCTGCCATTTCATTGAGGTAGGCTTCGGATAATAATGGGACGTCAATATTGGGATTAACAATCAAATCATCAAACTCCAAATCCTTCAACCAATCATTGTCATTCAACCACTCCAAGGGCTGCTCTGTTATA
TGGTTACATGGGACGTTGTGACTGGGCAACTGTTGCAATCCGGCCTGCTCAAAGTTCATTGGCTTCATTATGTTTAATATGTATCACCTCCTACAGCAAAAATTCAGGAATAAATCATATCGAAATCTCTCTCAAATAACATAAATTATCGAGATGAGTACAAACTAGAAAGGAGGATTTTGTCTTCCGGACACTGATAC
ATTTGTTTTTTTCCGACTTGATTTTCAGGAATCAAAATAACCAGGCACTGCTTTTTACAATTTCCTGCAGAACAAATTTCATAATGCAGCACATCGCAACTATTCTGTTGTTAAATGAgtaagtagtgaatattttcgataggttaaaatattgaggaaaggttaaaatgcatttgtgaatctatcactgtaaattgtag
atttgtatctacaaaattgaaaatttctcctctaatcttgcagtttctctttaaaaatgtaaattttgggcaaactagcttcgagatttttaatattatggtaaggtaatgcagATATGTCACGTCATCGATAGTGTACAGATGTGCTGAGTAGGGTGTCAGCCGAATAGCTTCCTTGTGAGTCTACCTTACCAGCTGTA
TTCACTGGAATGCTGTAATTTCCCATTGGCTCGAAACAATGTTTCCCAGCAATATTTTTGATCCATGGTTATATGTCGAAAATTGCAGACTACGACAACTAAATATGGCGGCAGTGTAATAGAGTAAGCTAAATTCTAGACAGTTTGTACCAAGAATTTTTTCGATGAAAATCTAGCTGAAATTGCTTCAATGATAGTTT
TGGATTGCTAAAATTGTATAATCGAGGTGCACCAATGGTAATCTACCAAAATTGCAATTCGAACAACTCAAATTGTAGTTTCAGCAATTTCCC

Intron 2 GTGAGTCTAC ... AAAATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	74.68	22.3	83.4	42.2
A2	71.71	12.1	30.1	29.6
A3	55.7	29.6	34.3	35.1
A4	85.75	4.7	28.7	27.5
A5	100	0	12.2	3.3
A6	41.14	95.3	60.5	62.5
A7	41.97	142.9	92.2	97.7
A8	44.73	212.9	163.4	157.9
A9	44.57	149.4	108.7	113.9
A10	42.25	97.3	64.9	68.6

>TRINITY_DN119864_c4_g1_i2 from sample A2 / Example spliced isoform

CAAGATCGTGATCGCGTGGAGATCATCAGTCTAAAGAAGATTCATGCCAACTGGAGGAGATCACTCATGCCAACCCACGAAAAGGAGATCAAAGAAAGGAAAGAAAACAGAACAAATTTCATAATGCAGCACATCGCAACTATTCTGTTGTTAAATGAATATGTCACGTCATCGATAGTGTACAGATGTGCTGAGTAGGG
TGTCAGCCGAATAGCTTCCTTACTACGACAACTAAATATGGCGGCAGTGTAATAGAGTAAGCTAAATTCTAGACAGTTTGTACCAAGAATTTTTTCGATGAAAATCTAGCTGAAATTGCTTCAATGATAGTTTTGGATTGCTAAAATTGTATAATCGAGGTGCACCAATGGTAATCTACCAAAATTGCAATTCGAACAAC
TCAAATTGTAGTTTCAGCAATTTCCC

>TRINITY_DN119864_c4_g1_i3 from sample A2 / Example unspliced isoform:

GGGACCCAGTTGATGAATTGTAGGAATGATCAAGGCCATTTATGTTTCCCATAGGAACGTCCAATATCTCTGCCATTTCATTGAGGTAGGCTTCGGATAATAATGGGACGTCAATATTGGGATTAACAATCAAATCATCAAACTCCAAATCCTTCAACCAATCATTGTCATTCAACCACTCCAAGGGCTGCTCTGTTATA
TGGTTACATGGGACGTTGTGACTGGGCAACTGTTGCAATCCGGCCTGCTCAAAGTTCATTGGCTTCATTATGTTTAATATGTATCACCTCCTACAGCAAAAATTCAGGAATAAATCATATCGAAATCTCTCTCAAATAACATAAATTATCGAGATGAGTACAAACTAGAAAGGAGGATTTTGTCTTCCGGACACTGATAC
ATTTGTTTTTTTCCGACTTGATTTTCAGGAATCAAAATAACCAGGCACTGCTTTTTACAATTTCCTGCAGAACAAATTTCATAATGCAGCACATCGCAACTATTCTGTTGTTAAATGAGTAAGTAGTGAATATTTTCGATAGGTTAAAATATTGAGGAAAGGTTAAAATGCATTTGTGAATCTATCACTGTAAATTGTAG
ATTTGTATCTACAAAATTGAAAATTTCTCCTCTAATCTTGCAGTTTCTCTTTAAAAATGTAAATTTTGGGCAAACTAGCTTCGAGATTTTTAATATTATGGTAAGGTAATGCAGATATGTCACGTCATCGATAGTGTACAGATGTGCTGAGTAGGGTGTCAGCCGAATAGCTTCCTTgtgagtctaccttaccagctgta
ttcactggaatgctgtaatttcccattggctcgaaacaatgtttcccagcaatatttttgatccatggttatatgtcgaaaattgcagACTACGACAACTAAATATGGCGGCAGTGTAATAGAGTAAGCTAAATTCTAGACAGTTTGTACCAAGAATTTTTTCGATGAAAATCTAGCTGAAATTGCTTCAATGATAGTTT
TGGATTGCTAAAATTGTATAATCGAGGTGCACCAATGGTAATCTACCAAAATTGCAATTCGAACAACTCAAATTGTAGTTTCAGCAATTTCCC

Intron 3 GTGAGTCTAC ... AAAATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	31	32
A2	89.47	2	13	21
A3	100	0	13	16
A4	93.55	1	10	19
A5	100	0	5	3
A6	80.25	8	34	31
A7	85.6	9	56	51
A8	84.26	17	97	85
A9	85.9	11	66	68
A10	76.36	13	36	48

>TRINITY_DN45178_c0_g1_i6 from sample A8 / Example spliced isoform

CAGACGACGAGGAGGAGATCAAGATCGTGATCGCGTGGAGATAATCAGTCTAAAGAAGACTCATGCCAACTGGAGGAGATCACTCATGCCGACCGACGAAAAGGACATCAAAGAAAGGAAAGAAAACAGATATGTCACATCATCGATAGTGTCAGCCGAATAGCTTCCTTACTACGACAACTAAATATGGCGGCCGTGTA
ATTTTTAAACTACCAAATCTATGCGTTAGTACACATGCTCCATGGGGGAATGGCCATACTTCTATTATTGGTTTCATTTAATGGTTTGAATTTTGTATGAAATTATATTTGCATTGTGCAAAATAATATATCAGAAAGTATCTCGCACTTGTTACTAACTGCGTCCAGTTGTTGTATTATAAATGGTAGGAATCCATTGC
CAAGATCTAGTTGGCTTATCAAAGGAAATGGAGTTAATCAAAAGTTGGATTGAACAATACAGCTATGAATATGATAGGACCATTGAACAACAAAAGCTAAAACTACTACAAAGGGTTGCACTAAAAAATGC

>TRINITY_DN45178_c0_g1_i2 from sample A8 / Example unspliced isoform:

CAGACGACGAGGAGGAGATCAAGATCGTGATCGCGTGGAGATAATCAGTCTAAAGAAGACTCATGCCAACTGGAGGAGATCACTCATGCCGACCGACGAAAAGGACATCAAAGAAAGGAAAGAAAACAGATATGTCACATCATCGATAGTGTCAGCCGAATAGCTTCCTTgtgagtctaccttcccagctgtattcactg
gaatgctgtaatttcccattgaaacaatgtttcccagctatatttttgatccatggttatatgtcgaaaattgcagACTACGACAACTAAATATGGCGGCCGTGTAATTTTTAAACTACCAAATCTATGCGTTAGTACACATGCTCCATGGGGGAATGGCCATACTTCTATTATTGGTTTCATTTAATGGTTTGAATTTT
GTATGAAATTATATTTGCATTGTGCAAAATAATATATCAGAAAGTATCTCGCACTTGTTACTAACTGCGTCCAGTTGTTGTATTATAAATGGTAGGAATCCATTGCCAAGATCTAGTTGGCTTATCAAAGGAAATGGAGTTAATCAAAAGTTGGATTGAACAATACAGCTATGAATATGATAGGACCATTGAACAACAAA
AGCTAAAACTACTACAAAGGGTTGCACTAAAAAATGC