NA ----> NA
Intron 1 GTGCCCAAGC ... GCCACAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.24 | 53 | 38.5 | 42.5 |
| A2 | 47.5 | 24 | 25.5 | 18.5 |
| A3 | 48.16 | 19 | 19.7 | 15.7 |
| A4 | 43.73 | 24 | 16.7 | 20.7 |
| A5 | 39.13 | 7 | 4 | 5 |
| A6 | 50 | 1 | 1 | 1 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | 43.43 | 3 | 2.8 | 1.8 |
| A9 | 50 | 1 | 1 | 1 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN135734_c1_g1_i7 from sample A1 / Example spliced isoformGGTGGATTGTCCACTCGAAACTTTGGGATGTTTCTAAACTCCAACACAGTGTAATTTTCCTAAATTCTTACATGATTATTACTCATTTTGAAAACTTGCATACTCAAACTCCTATCTTGTCAAACTACTTGAAGATGAACTCTATGAAGGCCATATGAGAGACATAACCAATTCAGAAACTCAAGAGCAGCTTGAAGACT
CTAACAATCATGTAGAAGAATGGGAGCAAGGAAGCAAGAGAATATAAATAACATTATCCACTTTTTATACTTGAGGATTGATCTATATTTGAAAACCCTAATCTAAACAAAGAGGTCATGCAAGGCCATACTATTGGAGTACAAGATAACAACAAAAGCAATCCCTAAATAGTCTAAGGATAGGAGCCTAGGATAGATGG
CCTGATCGTCATCCACTCATGCATAATCTCCATCAAGACAAAATACCTTACTTGTATCCACAAAAACAACCCATTGTAAAAATAGATCCCTCATCCAAGCATTCAAGCATGCTGAGAATAGGTCTCAGAACAAGGATACAATTTTTACATTAAATGCTTTTCCCTAGTACTATCTTGTTAGAGCATTACCCTATATACAT
GTCGAGAATTAGTCAAGTGCAGGAAGGTCATAACATGTACATGGAAGATCATCAACACTATAATCTTGGAAAGATAAATGCCTAAAGTGATCCGAAAGGAAACACCCATCTGCTGCTTAACAAAACATGAAATTTTGTACGAAGATAACCTTCTCGAAATCTAAATAGATCAGTCATCATACATGAAGAGAAAAATGACT
TAATAAGCTTTCCCAGGGTATCACCCACAAAAGGTGTCCAAGCAACATATTATTCACTGGTAGATGTTTTATCAAAGTGCTTTAAATGACTTAAAACAACCTTAAAGAATGGATAAAGTCTCTGATTTGGGTGCAATGATGGGATAAAACAAGTTGAGAAGAACACCCTTCTACTCAAAATAAGACAAGACCTGCAGATA
GAAACTGAGAATAACCCCCTAAACAAGGACCTTTCTTGGCACTTAGATTTTGCTTAAAATAGCTCTCACGCAACACCCATTTTTAGCTTTGCTCAAAAGAAGACATCCTAATCACCATAAAAGCATGCTAGAAACAACTATAATACAATGCATTTGTTCTCCAAATATGATGTTCTTTTCTTGTCTTCAAAAATATTGCT
TCATCGTTCTAGAATCAACTCCTATGGCAGTGCTCCTTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGCTAGCACTTCCGTTATGCAATAATTGCACTTCAATGTAATTTGTTCTCCAAATATGATGTTCTTTTCTTGTCTTCACAAATAGTGCTTCATCGTTCTAGAATCAA
CTCCTATGGCAGTGCTCCTTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGGTAGCACTTCCGTTATGCAATAATTGCACTTCAATGTAATTTGTTCTCCAAATATGATGTTCTTTTCTTGTCTTCACAAATAGTGCTTCATCGTTCTAGAATCAACTCCTATGGCAGTGCTCC
TTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGGTAGCACTTCGGTTATGCAATAATTGCACTTCAATGTAACTGATCTTTGTCTTTCATAAGAATGCCCCCATTAGATGATTGTTCACAAAAGCAAAATCAACAGAATTTATGAAAGGTGCCCTTCATTGATCTGAAAATTAG
GTTGCTCTTGAAGGCATCTCTGAAATGGGGAATATTCATGTAGCTCCTTCTTCAAACAAGACTTGGGTTCAAATAGACTTTTCTTGCTTTACAAGCAGCCAGTGAATCAGATTGAATCAATCTTCTTGATGATGCTCCACTTGATGCTCTCATGAAGTGATGATATCTGTTGTCTCTAGGCATTGTACCTTTTGAAATCA
CTATTATATCATAAATATACTGTGGGTAAACTAATACATACAATTTGCTTGGTGAAACCAACAAAGGAAGTTTGTTTTGTTGCAGATCAAAATCAAGTCTAGACTTGACAACTTGTCTTCAAGTAAGAATCAGTGATGAAAGTATCTGCTGTAGATGACTAAAATTAATAACAAACGAAAGTGATGGGGCAAAAAAATCA
TGATGTACTGCAAAAACCATGTAAAACAATACTGATATACCTTAGATAAAGGCTCCTTACTTGCCTTCGTATTATCAATGAACATGGAGTGTTGTCCCTATGGCAAAGAACTCTTATTTCTGCTGCAAATACTGTAAATATATGCAATGGACATGGAGTGTTGTCCATATGGCAAATAGTTCTCATTTCTGCTGCAAACA
CTTGTAAATATATGCATAAAGTAGAGGTAAGGTGCTGCTGGCATTGTGCAAACCATTCCTTTTCAAAATCAACACCAGAATATAGTTTGCTTGCTGTTAATGCAATCTTGCCTTGCTCGCAACATGCCTCTCATGGATAAGCTAAGTATAACCTGAGTGTGAAGCCTATCGAATCTTGAAATGAAGAAGTCTGAAGTGAT
GGCTTTCATGAATCTTTGTTAGCTGCTATTTTGAAGCACTTGAACCTAAGTCTAGTTGAAGCACTTGAACCTTGTAATAAAGCTCAAACCTGAAAGCAAAAATTTCCACTTCTTTACATGGTTGGTACTGGGCTTCAACAAAGTGAATCTGTATTGACTCCACAACAAAATAGATTTTTCTAAATTGCAAATCATGGTGT
TAACACCTATAACATATATACCTCTGTTTTGACTATTATTTGAAGTCCCTAAGCTATTGGGGTTAAATTGGGCTTACTTAACTCTTTAGTTATTATTTAGCATTCTGATACTTGTCTGAGATTATATACCTTGTTTTTCTCAACTTGTTTTCTTGCCCTCCTTTCTTGTGAGTAGGTGGATCTTCGGGTTATTTCTACAC
AAAAAGGACCACTAACATATATTTTGTTTGCTTTGATTCTGATATTTCCTACTTGCCTCTCGACACCTCTAATGAAAGAGTTAATTTATATATCTCATTCCAAACTTGTATTGGTTTCTCTGCACATGTAGGATTTGATTACATCAGAAATAAATTAATAATGAATATGACTGTTGTGTGATCATTGACCTTTTTCTTAC
CATTTTCTCATGTGATAGAGAAGAAAATGGAATTGATGTCAAGGAATTTAAGACTTTCGCTAATATGACAGAATATTATGGCGAAGATTCTTTAGCATTTTTAGTTTTATTATAGGTCTATCTAAGCTTTAGAGCACATGACCATCTCAAGTTTGAAAGGGGCAAATGTATCATCACTAGTGAGGCACACCTCTCTCTCA
GTCATCAATGTTGAATGAAATTTGTTGATGAGAGTTGGTCTCATAGTGGGCTTAGTTAGGCTAGTATTATAACTATTATTTAACTTTATTTTTCCTATCTCATTGTATATATTTCATAGGGAGTTTGGTTGCACTCGATCCTCCACCTAAATATGTATATTTTTATTATAACCCTACGAGACTTGGTCAAAGATGACGAC
TCTCTACCAATTTCATACTTGGTCAAAGATTATCAATCTCCACTTCTTGCAGTTGTTCATTCGCTAATTTACATACATATTACCACGGGGAGAGGATGCCTCATCTTATTTTTGTGGAAATCTAAATGACCACCATTTGAGCATTCATAATTTTTCATAATTTCTTAAATTCACTACAAAACTTTTGCTTCTCAGATTCA
CTTCCATACAAAGGCCATGAATTGGGGGTTGGATTGTTATCAACATTGGATTCTCAGATTCTTAGTTTGCTGGATGGACCCTCTGGTTCAATTTATATAAAGTGGGTATTGGATTGTTATCAACATTAGCTAAAAATTTATTTAGTATGTATAAATTTAGGACGTGGAGTGTCAAATCCAAAAGAAGTTTAAGACAAGTA
GTTAAAGTCATTGAAACTTCTAAGAAAGCTTGAGAATTGTGAAGACTGTCAAGGCATGCTTAGACTTCTAGTCTTTGGATTTGATGGGATAGGTCCTTCTATAGGTCTTTGGATTGGATTTGAAAATTTCTATATCACACGAGTG
>TRINITY_DN135734_c1_g1_i8 from sample A1 / Example unspliced isoform:GGTGGATTGTCCACTCGAAACTTTGGGATGTTTCTAAACTCCAACACAGTGTAATTTTCCTAAATTCTTACATGATTATTACTCATTTTGAAAACTTGCATACTCAAACTCCTATCTTGTCAAACTACTTGAAGATGAACTCTATGAAGGCCATATGAGAGACATAACCAATTCAGAAACTCAAGAGCAGCTTGAAGACT
CTAACAATCATGTAGAAGAATGGGAGCAAGGAAGCAAGAGAATATAAATAACATTATCCACTTTTTATACTTGAGGATTGATCTATATTTGAAAACCCTAATCTAAACAAAGAGGTCATGCAAGGCCATACTATTGGAGTACAAGATAACAACAAAAGCAATCCCTAAATAGTCTAAGGATAGGAGCCTAGGATAGATGG
CCTGATCGTCATCCACTCATGCATAATCTCCATCAAGACAAAATACCTTACTTGTATCCACAAAAACAACCCATTGTAAAAATAGATCCCTCATCCAAGCATTCAAGCATGCTGAGAATAGGTCTCAGAACAAGGATACAATTTTTACATTAAATGCTTTTCCCTAGTACTATCTTGTTAGAGCATTACCCTATATACAT
GTCGAGAATTAGTCAAGTGCAGGAAGGTCATAACATGTACATGGAAGATCATCAACACTATAATCTTGGAAAGATAAATGCCTAAAGTGATCCGAAAGGAAACACCCATCTGCTGCTTAACAAAACATGAAATTTTGTACGAAGATAACCTTCTCGAAATCTAAATAGATCAGTCATCATACATGAAGAGAAAAATGACT
TAATAAGCTTTCCCAGGGTATCACCCACAAAAGgtgcccaagctagccacaaaagGTGTCCAAGCAACATATTATTCACTGGTAGATGTTTTATCAAAGTGCTTTAAATGACCGAAAACAACCTTAAAGAATGGATAAAGTCTCTGATTTGGGTGCAATGATGGGATAAAACAAGTTGAGAAGAATCACCCTTCTACTCA
AAATAAGACAAGACCTGCAGATAGAAACTGAGAATAACCCCCTAGACAAGGACCTCTCTTGGCACTTAGATTTTGCTTAAAATAGCTCTCACGCAACACCCATTTTTAGCTTTGCTCAAAAGAAGACATCCTAATCACCATAAAAGCATGCTAGAAACAACTATAATACAATGCATTTGTTCTCCAAATATGATGTTCTT
TTCTTGTCTTCAAAAATATTGCTTCATCGTTCTAGAATCAACTCCTATGGCAGTGCTCCTTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGCTAGCACTTCCGTTATGCAATAATTGCACTTCAATGTAATTTGTTCTCCAAATATGATGTTCTTTTCTTGTCTTCACAAATA
GTGCTTCATCGTTCTAGAATCAACTCCTATGGCAGTGCTCCTTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGGTAGCACTTCCGTTATGCAATAATTGCACTTCAATGTAATTTGTTCTCCAAATATGATGTTCTTTTCTTGTCTTCACAAATAGTGCTTCATCGTTCTAGA
ATCAACTCCTATGGCAGTGCTCCTTCTTAGTCTGAATTTAGTATACAACTAGAGTCTAAAATTAAACTACTTGCACTCTAAGGTAGCACTTCGGTTATGCAATAATTGCACTTCAATGTAACTGATCTTTGTCTTTCATAAGAATGCCCCCATTAGATGATTGTTCACAAAAGCAAAATCAACAGAATTTATGAAAGGTG
CCCTTCATTGATCTGAAAATTAGGTTGCTCTTGAAGGCATCTCTGAAATGGGGAATATTCATGTAGCTCCTTCTTCAAACAAGACTTGGGTTCAAATAGACTTTTCTTGCTTTACAAGCAGCCAGTGAATCAGATTGAATC