NA ----> NA

Intron 1 GTTGAGAAAC ... TGCATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	77.5	1	3	3.5
A2	94.44	0.5	6.5	9.5
A3	63.89	3	6	5.5
A4	81.66	2	6.5	9
A5	84.52	2	4	11
A6	87.89	16	43	115
A7	84.7	17.5	26	96.5
A8	84.65	14	27	75
A9	88.75	13.5	44	106
A10	87.93	5.5	8	40

>TRINITY_DN48128_c0_g1_i8 from sample A7 / Example spliced isoform

CGGCCTCTTTGCCAAGGTCAATTGTTAGAAACGTAACTTTCAGTAGCTTGCTACTGGGGATCTCGGGCGTCGCTTTAGCGTTTAACAAACGTAATCAGTGTAATCAATAGAGCGTACTTGATGATAGTGTTCAGATTTCTTTATCCTCAGGGGTCTCGTATGAAAAACAATTGTAGATGGTCTAGATTGGATGGATTCCT
TAAGGGTTCTTCACATGAAAGACATTGCAATTGTTACCTGTAAGTTGAAGATATGCAAGTGTTATTTGTATTTGCATCGCATTGCATATGATTGCCTTGATGGGTTCCTCAGATGAAAAACATTGCAATTGTTATTTGTGAGTTGAAGAAATGCACTGCCGAATTTTATCGTGGTTTATTAATTATTTATTTTCAGGAAC

>TRINITY_DN48128_c0_g1_i7 from sample A7 / Example unspliced isoform:

CGGCCTCTTTGCCAAGGTCAATTGTTAGAAACGTAACTTTCAGTAGCTTGCTACTGGGGATCTCGGGCGTCGCTTTAGCGTTTAACAAACGTAATCAGTGTAATCAATAGAGCGTACTTGATGATAGTGTTCAGgttgagaaactggcacttataaactccagcatttcgttaatatttacagttagcttcgtgacacag
cacatctacttcttattgcattgcagATTTCTTTATCCTCAGGGGTCTCGTATGAAAAACAATTGTAGATGGTCTAGATTGGATGGATTCCTTAAGGGTTCTTCACATGAAAGACATTGCAATTGTTACCTGTAAGTTGAAGATATGCAAGTGTTATTTGTATTTGCATCGCATTGCATATGATTGCCTTGATGGGTTCC
TCAGATGAAAAACATTGCAATTGTTATTTGTGAGTTGAAGAAATGCACTGCCGAATTTTATCGTGGTTTATTAATTATTTATTTTCAGGAAC

Intron 2 GTTGAGAAAC ... TTATCCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	1	3	3
A2	100	0	9	12
A3	81.82	1	4	5
A4	100	0	9	10
A5	100	0	6	15
A6	89.53	10	49	122
A7	90.28	7	30	100
A8	82.98	12	35	82
A9	89.16	9	47	101
A10	96.67	1	11	47

>TRINITY_DN48128_c0_g1_i6 from sample A7 / Example spliced isoform

CGGCCTCTTTGCCAAGGTCAATTGTTAGAAACGTAACTTTCAGTAGCTTGCTACTGGGGATCTCGGGCGTCGCTTTAGCGTTTAACAAACGTAATCAGTGTAATCAATAGAGCGTACTTGATGATAGTGTTCAGGGGTCTCGTATGAAAAACAATTGTAGATGGTCTAGATTGGATGGATTCCTTAAGGGTTCTTCACAT
GAAAGACATTGCAATTGTTACCTCCTAGCCATCCTGTATTGGTGTTGCTATTAGAGAGGCAGTCCTCCATGACGAAAGGATAGGGGTGACCAGATCTACATTTGTTTAGTGTTA

>TRINITY_DN48128_c0_g1_i7 from sample A7 / Example unspliced isoform:

CGGCCTCTTTGCCAAGGTCAATTGTTAGAAACGTAACTTTCAGTAGCTTGCTACTGGGGATCTCGGGCGTCGCTTTAGCGTTTAACAAACGTAATCAGTGTAATCAATAGAGCGTACTTGATGATAGTGTTCAGgttgagaaactggcacttataaactccagcatttcgttaatatttacagttagcttcgtgacacag
cacatctacttcttattgcattgcagatttctttatcctcagGGGTCTCGTATGAAAAACAATTGTAGATGGTCTAGATTGGATGGATTCCTTAAGGGTTCTTCACATGAAAGACATTGCAATTGTTACCTGTAAGTTGAAGATATGCAAGTGTTATTTGTATTTGCATCGCATTGCATATGATTGCCTTGATGGGTTCC
TCAGATGAAAAACATTGCAATTGTTATTTGTGAGTTGAAGAAATGCACTGCCGAATTTTATCGTGGTTTATTAATTATTTATTTTCAGGAAC