sp|Q3EBL9|VP372_ARATH ----> Vacuolar protein-sorting-associated protein 37 homolog 2
Intron 1 GTGGGTACCC ... AATATAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.26 | 23 | 25 | 6 |
| A2 | 47.54 | 16 | 18 | 11 |
| A3 | 47.95 | 19 | 18 | 17 |
| A4 | 41.18 | 15 | 11 | 10 |
| A5 | 44.19 | 12 | 14 | 5 |
| A6 | 39.46 | 56 | 55 | 18 |
| A7 | 44.38 | 89 | 87 | 55 |
| A8 | 44.33 | 54 | 46 | 40 |
| A9 | 40.12 | 97 | 90 | 40 |
| A10 | 44.7 | 73 | 65 | 53 |
>TRINITY_DN38238_c0_g1_i9 from sample A7 / Example spliced isoformAAATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCC
CGAGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCT
GCTTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGATTCCAAGGCCTTGCTTGAATTTATTTGCTACTGTGTCTCTGGACCAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACA
CCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAA
AAG
>TRINITY_DN38238_c0_g1_i5 from sample A7 / Example unspliced isoform:AAATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCC
CGAGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCT
GCTTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGgtgggtacccagcggtccgtccatccatggcctttttctctttaattgctttgcagtttttcatggtgggtataagaagggggtgtgctctggtgtgtgtttgcttgtgaatgtgtcatgattgaatatagaagA
TTCCAAGGCCTTGCTTGAATTTATTTGCTACTGTGTCTCTGGACCAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACA
TCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGGTTAATTGAATAACAGTGGTATGTTTTTTTCGCGGAAAAAAAATAAAAATTTGAAGACCAACC
CTTTGGCAGCCTAAATGTATATTTCAATATTTCTTTGCCACAACCATCCAATGGATTCAAGATTTTTGAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAA
GAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAA
ATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGT
GTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATAT
CTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGAC
Intron 2 GTTACTTGCT ... GTTGCCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.68 | 23 | 4 | 5.3 |
| A2 | 20.63 | 8 | 0 | 4.3 |
| A3 | 17.46 | 10 | 3 | 3.7 |
| A4 | 17.2 | 15 | 3 | 5.3 |
| A5 | 21.57 | 6 | 0 | 3.7 |
| A6 | 15.8 | 61 | 7 | 18.3 |
| A7 | 17.36 | 83 | 7 | 28 |
| A8 | 16.84 | 83 | 9 | 26.3 |
| A9 | 17.92 | 74 | 5 | 28.7 |
| A10 | 15.13 | 65 | 9 | 18 |
>TRINITY_DN38238_c0_g1_i4 from sample A7 / Example spliced isoformAAATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCC
CGAGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCT
GCTTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCG
ACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGGTTAATTGAATAACAGTGGTATGTTTTTTTCGCGGAAAAAAAATA
AAAATTTGAAGACCAACCCTTTGGCAGCCTAAATGTATATTTCAATATTTCTTTGCCACAACCATCCAATGGATTCAAGATTTTTGAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAG
GCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAA
GTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACA
AAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGA
TTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGAC
>TRINITY_DN38238_c0_g1_i8 from sample A7 / Example unspliced isoform:GTAGAACCAAGCACAATAAAAATGTTAAATTGGATTAAAATGGTTAAATATTTCAAAACCTTAATACATGCATAATAAAATTTGAAGGTTTCAGCTGATTGTGGATGATCCAGTTTTATTTTTTGACGGGGCAGCATCTGCAGGGAAATGTGGCATTGGTGGTGTTATTTTTCTCAACCATGATCATTTTTACACTTTCC
GTATGCATGGTGGATATGGGACCAATATGAAAGCTGAGCTTTTAGCTCTCTGGTGTGTCGTCAGAGTAGCATTATGCTTTGGTCTGCATAAGGCTAAAATTTTTGGTGACTCTAGAGTTACTATTAAGTGGGCTCGTGGTGAGTATGATTTGCAGGTACTTAATCTGAGCTACTGGTGTAATCGTATTCAGCAGGATTTA
AGTTCGCTTCTTTCATATTCACTGGAACATATTTACCGTGAGTTTAATACTCAAGCTGACAAACTTTCAAAGTTGGCATTGGATGGTGATGAAGGTCTTCTATTTTGGGAGGATGTTTGTGAAGATGTGGTGGTGGATTCTGGTTTCCAATATTTTCTTGTCTAAGTCTTACATTAGAATTTTGTATGACTGCATATTGG
CCATGGATATCAGTCCAGTTTGCTAAATTTTGTAGTTTGAAGTGGAAGGAAGGTCCATTTTGATATGTTGGACAGACTGTAATATCTTTTGATGAACATCTGTACTACTTGATTCAGGTTAATTGAATAACAGTGGTATGTTTTTTTCGCGGAAAAAAAATAAAAATTTGAAGACCAACCCTTTGGCAGCCTAAATGTAT
ATTTCAATATTTCTTTGCCACAACCATCCAATGGATTCAAGATTTTTGAAAGgttacttgctcttaatcaaaccaggctttgtgactacaattttcatgtttgcaattaaatgggattctcttaaagaaatggtggttccgtttttgtgtctttgtaatatctattgatctcctttattattttgtttgtggttgccaaa
gTTTGGATGAACTTGACCTG
Intron 3 GTTAATTGAA ... TTTTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.64 | 58 | 20 | 20.6 |
| A2 | 14.04 | 49 | 8 | 7 |
| A3 | 27.69 | 47 | 18 | 9.1 |
| A4 | 20 | 44 | 11 | 13.4 |
| A5 | 23.91 | 35 | 11 | 5.3 |
| A6 | 19.03 | 200 | 47 | 54.1 |
| A7 | 24.34 | 258 | 83 | 73.4 |
| A8 | 24.75 | 191.5 | 63 | 73.8 |
| A9 | 20.78 | 251.5 | 66 | 65.3 |
| A10 | 24.5 | 188 | 61 | 57.9 |
>TRINITY_DN116151_c0_g1_i2 from sample A1 / Example spliced isoformATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGGTGGGTACCCAGCGGTCCGTCCATCCATGGCCTTTTTCTCTTTAATTGCTTTGCAGTTTTTCATGGTGGGTATAAGAAGGGGGTGTGCTCTGGTGTGTGTTTGCTTGTGAATGTGTCATGATTGAATATAGAAGATT
CCAAGGCCTTGCTTGAATTTATTTGCTACTGTGTCTCTGGACCAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATC
TGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGG
AACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTT
TCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTA
GATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGT
GGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATT
CATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCCATTTTGGGAAACTAAATGGTTATTAAGCATATTTGCAAGTGGACAT
>TRINITY_DN116151_c0_g1_i5 from sample A1 / Example unspliced isoform:ATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTCAGAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTC
GACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGgttaattgaataacagtggtatgtttttttcgcggaaaaaaaat
aaaaatttgaagaccaaccctttggcagcctaaatgtatatttcaatatttctttgccacaaccatccaatggattcaagatttttgaaagTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAA
GGCCATGCAGACCTGGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGTTAGAATCTGGACTGGAAACCATCATTATTTTAGTATTACGTGTGATTTGACCTTATTTTATTTCTGTTGCTTTATGAAGTTGATATAACTAGTGGTTCCCTCTTTAGTCTGCAAGTTATGGAAGTACTGCTTGATT
TTATTTGGATTTTGGAATGCTCAAGCTGCAAAGTTTCAGCATGTCATAGAAAATAGATCATTCACAATAGTTCACTGCTTCATTGTACTTTTCCACATGGCAGCTGGTCCTTCAAGA
Intron 4 GCCAGGTTCC ... AATCTGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.11 | 92.6 | 0 | 16 |
| A2 | 22.15 | 72.4 | 1 | 19 |
| A3 | 24.42 | 70.4 | 0 | 22 |
| A4 | 25.15 | 67.6 | 0 | 20 |
| A5 | 11.34 | 29 | 0 | 3 |
| A6 | 19.55 | 241.8 | 1 | 52 |
| A7 | 20.38 | 350.6 | 1 | 82 |
| A8 | 23.95 | 244.4 | 0 | 73 |
| A9 | 21.49 | 281 | 0 | 72 |
| A10 | 20.3 | 249.6 | 0 | 57 |
>TRINITY_DN36152_c0_g1_i1 from sample A9 / Example spliced isoformTTGAAATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAG
TCCCGAGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGG
GCTGCTTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGGTGGGTACCCAGCGGTCCGTCCATCCATGGCCTTTTTCTCTTTAATTGCTTTGCAGTTTTTCATGGTGGGTATAAGAAGGGGGTGTGCTCTGGTGTGTGTTTGCTTGTGAATGTGTCATGATTGAATATAGA
AGATTCCAAGGCCTTGCTTGAATTTATTTGCTACTGTGTCTCTGGACCAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCT
ACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTC
TCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGATAAAAGCAGACCTTGAGCAGTGATATCAAGTCATTAGGAGATAAAAGGGGACCAACTAAGCAAGAATCAAGTGACATGCATGG
CATGCAAGCCATAAATTAAATTGCATGCGGCATGTGTCATTTAAGTTGCATGCACGCAAAAAGTGAGTTGCATGCAGTCAAAAGACAATAAAAGAAGGAAAAGCGAGTTCTCTAGCATGCATATGTTATTATTCACTTTTGAGAAACAAGTTTGAGAGATCTGAGGGTGATTTAGGGTTGAGGGCGCAGTTCCTTAGCCA
TCAAGTGGATTCGGTAGCGAAATCTATCTACCCTAGTCACTTTTGAGGATAGATCAACCAGATATATCACATTGCTTCAATTCTATAGTATATTCATCAGTCTTTCAGGGATTCTGGAGATCCACAGCTGCATATTAATTCATAGAGGGCGCATTCTTCTAGCACATCTTGAGGGCATATTTCTTGGCTTTTACTGAGGG
CGCATTGTCTAGATCCAGATCCCCATACAAAGGGCGCAGAGTCTGATCATTATTGGAGGCGTGTTGCCCATCTACATCACCAGATCTATTCCACAGAGGGCATCCTGCCTTGTTGCATCCTTGAGGGCACACTATATTCTTCTTATAAAGTATTGAGGGCACACTTCTCTTATTTGGATCATTGGAGGCGCATTCATCTG
GTTCATTGGAGATCTATCATTCATACTATTCACTGGGTGGACTACTATTGATCCTACTGCTGCTTATTGGGATCCATTGTAGCATTTCTGGAGCTGCTTCTATAGATCTGACATCAGAAGAGAGCGCAAGGCTATGCATGCACTGCATGGGCGAATTCTCTCAAGGAGCTGCTTCCATATCTTGACCTAGAGCTGATGCA
TGACTTGCATGTTTTCTATATGAGCTTACGCTACACCAGTACGTCTCATTGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATC
AGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGA
GTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTT
ATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCC
>TRINITY_DN36152_c0_g1_i6 from sample A9 / Example unspliced isoform:AGAATGCAAAGACCTGTGCTAGgccaggttcctaatttcccaatcgtggagcacatctggattctgcagataaaataaggcacccttgtttgtgctgtttgcgaaattatgctgaatctgagagGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCAT
TAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAG
TCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGATAAAAGCAGACCTTGAGCAGTGATATCAAGTCATTAGGAGATAAAAGGGGACCAACTAAGC
AAGAATCAAGTGACATGCATGGCATGCAAGCCATAAATTAAATTGCATGCGGCATGTGTCATTTAAGTTGCATGCACGCAAAAAGTGAGTTGCATGCAGTCAAAAGACAATAAAAGAAGGAAAAGCGAGTTCTCTAGCATGCATATGTTATTATTCACTTTTGAGAAACAAGTTTGAGAGATCTGAGGGTGATTTAGGGT
TGAGGGCGCAGTTCCTTAGCCATCAAGTGGATTCGGTAGCGAAATCTATCTACCCTAGTCACTTTTGAGGATAGATCAACCAGATATATCACATTGCTTCAATTCTATAGTATATTCATCAGTCTTTCAGGGATTCTGGAGATCCACAGCTGCATATTAATTCATAGAGGGCGCATTCTTCTAGCACATCTTGAGGGCAT
ATTTCTTGGCTTTTACTGAGGGCGCATTGTCTAGATCCAGATCCCCATACAAAGGGCGCAGAGTCTGATCATTATTGGAGGCGTGTTGCCCATCTACATCACCAGATCTATTCCACAGAGGGCATCCTGCCTTGTTGCATCCTTGAGGGCACACTATATTCTTCTTATAAAGTATTGAGGGCACACTTCTCTTATTTGGA
TCATTGGAGGCGCATTCATCTGGTTCATTGGAGATCTATCATTCATACTATTCACTGGGTGGACTACTATTGATCCTACTGCTGCTTATTGGGATCCATTGTAGCATTTCTGGAGCTGCTTCTATAGATCTGACATCAGAAGAGAGCGCAAGGCTATGCATGCACTGCATGGGCGAATTCTCTCAAGGAGCTGCTTCCAT
ATCTTGACCTAGAGCTGATGCATGACTTGCATGTTTTCTATATGAGCTTACGCTACACCAGTACGTCTCATTGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTG
CTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACT
GAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAG
ATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGACACATCCTGAAAACATAGCTAA
TATAAATGTTTGATAATGCC
Intron 5 GTACTTAATC ... TTTTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.18 | 58 | 12 | 23 |
| A2 | 15.52 | 49 | 10 | 8 |
| A3 | 22.95 | 47 | 18 | 10 |
| A4 | 22.81 | 44 | 11 | 15 |
| A5 | 18.6 | 35 | 10 | 6 |
| A6 | 20.48 | 200 | 42 | 61 |
| A7 | 21.34 | 258 | 57 | 83 |
| A8 | 24.41 | 192 | 41 | 83 |
| A9 | 20.13 | 252 | 53 | 74 |
| A10 | 23.73 | 188 | 52 | 65 |
>TRINITY_DN37767_c0_g2_i9 from sample A8 / Example spliced isoformAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCA
GAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATAT
CGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGA
ACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTA
GAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCCATTTTGGGAAACTAAATGGTTATTAAGCATATTTGCAA
GTGGACATTCAAAAAGGTACCAGAACCTTTTTAGTAGATTG
>TRINITY_DN37767_c0_g2_i6 from sample A8 / Example unspliced isoform:AGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGgtacttaatctgagctactggtgtaatcgtattcagcaggatttaagttcgcttctttcatattcactggaacatatttaccgtgagtttaatactcaagctgacaaactttcaaagttggcattggatggtgatgaaggtcttctattttgggaggatg
tttgtgaagatgtggtggtggattctggtttccaatattttcttgtctaagtcttacattagaattttgtatgactgcatattggccatggatatcagtccagtttgctaaattttgtagtttgaagtggaaggaaggtccattttgatatgttggacagactgtaatatcttttgatgaacatctgtactacttgattc
aggttaattgaataacagtggtatgtttttttcgcggaaaaaaaataaaaatttgaagaccaaccctttggcagcctaaatgtatatttcaatatttctttgccacaaccatccaatggattcaagatttttgaaagTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCT
GGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGATAAAAGCAGACCTTGAGCAGTGATATCAAGTCATTAGGAGATAAAAGGGGACCAACTAAGCAAGAATCAAGTGACATGCATGGCAT
GCAAGCCATAAATTAAATTGCATGCGGCATGTGTCATTTAAGTTGCATGCACGCAAAAAGTGAGTTGCATGCAGTCAAAAGACAATAAAAGAAGGAAAAGCGAGTTCTCTAGCATGCATATGTTATTATTCACTTTTGAGAAACAAGTTTGAGAGATCTGAG
Intron 6 GTCCGTCCAT ... TCTGGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28 | 108 | 12 | 42 |
| A2 | 26.85 | 79 | 4 | 29 |
| A3 | 33.01 | 69 | 9 | 34 |
| A4 | 19.59 | 78 | 3 | 19 |
| A5 | 25.42 | 44 | 5 | 15 |
| A6 | 22.93 | 279 | 18 | 83 |
| A7 | 25.78 | 380 | 44 | 132 |
| A8 | 28.79 | 235 | 19 | 95 |
| A9 | 27.78 | 312 | 49 | 120 |
| A10 | 26.34 | 274 | 25 | 98 |
>TRINITY_DN42293_c9_g1_i6 from sample A6 / Example spliced isoformATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGGTGGGTACCCAGCGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCT
TCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAG
TAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTC
AGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTT
GCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTT
AGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGC
>TRINITY_DN42293_c9_g1_i2 from sample A6 / Example unspliced isoform:ATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGGTGGGTACCCAGCGgtccgtccatccatggcctttttctctttaattgctttgcagtttttcatggtgggtataagaagggggtgtgctctggtgtgtgtttgcttgtgaatgtgtcatgattgaatatagaagatt
ccaaggccttgcttgaatttatttgctactgtgtctctggaccagCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATC
TGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAG
Intron 7 GTACTTAATC ... CTTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 20 | 12 | 7 |
| A2 | 55.56 | 8 | 10 | 2 |
| A3 | 50 | 18 | 18 | 5 |
| A4 | 50 | 11 | 11 | 0 |
| A5 | 47.62 | 11 | 10 | 0 |
| A6 | 47.19 | 47 | 42 | 13 |
| A7 | 40.71 | 83 | 57 | 14 |
| A8 | 39.42 | 63 | 41 | 17 |
| A9 | 44.54 | 66 | 53 | 8 |
| A10 | 46.02 | 61 | 52 | 11 |
>TRINITY_DN37767_c0_g2_i4 from sample A8 / Example spliced isoformAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGGTTAATTGAATAACAGTGGTATGTTTTTTTCGCGGAAAAAAAATAAAAATTTGAAGACCAACCCTTTGGCAGCCTAAATGTATATTTCAATATTTCTTTGCCACAACCATCCAATGGATTCAAGATTTTTGAAAGGTTACTTGCTCTTAATCAAACCAGG
CTGTGTG
>TRINITY_DN37767_c0_g2_i6 from sample A8 / Example unspliced isoform:AGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGgtacttaatctgagctactggtgtaatcgtattcagcaggatttaagttcgcttctttcatattcactggaacatatttaccgtgagtttaatactcaagctgacaaactttcaaagttggcattggatggtgatgaaggtcttctattttgggaggatg
tttgtgaagatgtggtggtggattctggtttccaatattttcttgtctaagtcttacattagaattttgtatgactgcatattggccatggatatcagtccagtttgctaaattttgtagtttgaagtggaaggaaggtccattttgatatgttggacagactgtaatatcttttgatgaacatctgtactacttgattc
agGTTAATTGAATAACAGTGGTATGTTTTTTTCGCGGAAAAAAAATAAAAATTTGAAGACCAACCCTTTGGCAGCCTAAATGTATATTTCAATATTTCTTTGCCACAACCATCCAATGGATTCAAGATTTTTGAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCT
GGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGATAAAAGCAGACCTTGAGCAGTGATATCAAGTCATTAGGAGATAAAAGGGGACCAACTAAGCAAGAATCAAGTGACATGCATGGCAT
GCAAGCCATAAATTAAATTGCATGCGGCATGTGTCATTTAAGTTGCATGCACGCAAAAAGTGAGTTGCATGCAGTCAAAAGACAATAAAAGAAGGAAAAGCGAGTTCTCTAGCATGCATATGTTATTATTCACTTTTGAGAAACAAGTTTGAGAGATCTGAG
Intron 8 GTTAGTAGGG ... ATATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.18 | 68.3 | 14 | 6 |
| A2 | 20.05 | 48.7 | 12 | 3 |
| A3 | 23.81 | 42.7 | 13 | 0 |
| A4 | 26.92 | 52.3 | 19 | 5 |
| A5 | 26.66 | 22.7 | 8 | 0 |
| A6 | 19.2 | 197 | 46 | 0 |
| A7 | 18.06 | 257.3 | 56 | 4 |
| A8 | 16.43 | 242.7 | 47 | 4 |
| A9 | 19.26 | 247.3 | 58 | 8 |
| A10 | 18.17 | 174 | 38 | 2 |
>TRINITY_DN37767_c0_g2_i9 from sample A8 / Example spliced isoformAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCA
GAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATAT
CGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGA
ACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTA
GAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATTCATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCCATTTTGGGAAACTAAATGGTTATTAAGCATATTTGCAA
GTGGACATTCAAAAAGGTACCAGAACCTTTTTAGTAGATTG
>TRINITY_DN37767_c0_g2_i11 from sample A8 / Example unspliced isoform:AGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATG
CTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGgttagtagggtcaatctgctcttcgtgtttttgatttatgcttatttttgaattgtattcattcaatataca
ctgtacaacaatgtctgacttttgatatgctgtcatatttttagTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGGATAAAAGCAGACCTTGAGCAGTGATATCAAGTCATTAGGAGATAAAAGGGGACCAACTAAGCAAGAAT
CAAGTGACATGCATGGCATGCAAGCCATAAATTAAATTGCATGCGGCATGTGTCATTTAAGTTGCATGCACGCAAAAAGTGAGTTGCATGCAGTCAAAAGACAATAAAAGAAGGAAAAGCGAGTTCTCTAGCATGCATATGTTATTATTCACTTTTGAGAAACAAGTTTGAGAGATCTGAG
Intron 9 GTGGGTACCC ... TCTGGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.67 | 114.3 | 22.9 | 36 |
| A2 | 23.18 | 87.6 | 16.7 | 26.2 |
| A3 | 29.28 | 72.8 | 16.6 | 30.5 |
| A4 | 18.23 | 79.5 | 10.1 | 17.5 |
| A5 | 21.53 | 47.2 | 13 | 13.2 |
| A6 | 19.57 | 292.8 | 50.6 | 71.7 |
| A7 | 22.41 | 402.4 | 79.9 | 116.7 |
| A8 | 24.9 | 249.1 | 42.4 | 83.3 |
| A9 | 23.27 | 335.8 | 82.8 | 104.2 |
| A10 | 23.11 | 296.6 | 59.9 | 88.5 |
>TRINITY_DN116151_c0_g1_i8 from sample A1 / Example spliced isoformATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGAC
AAATCCCTCAGCTACATCTGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATT
CTTTTCTACATTCTCTGGAACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAA
GAGATCACTGCTAACTTTTCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATC
TTTGGGGAGACCTGGTTAGATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAG
TCCCATCCATGTATTTGTGGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGT
ACATTTATGCTGTGCATTCATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCCATTTTGGGAAACTAAATGGTTATTAAGCATATTTGCAAGTGGACAT
>TRINITY_DN116151_c0_g1_i2 from sample A1 / Example unspliced isoform:ATTGGACTGAATTTGAAAAAAAAATTACACTGTAGAGAATCCTTTTGCTTTAGGGGGCATGCATCTCTGCTATGCTAGGCTTGAGAATAAAAAATCCGTAAACAGAAAACAATGGATGAGAAAGGAACCGTGCGAAGGCGGTAACAGGGTGTAATCATTATAGTTGTCCAAACTACACCTTACAAGACCGCCGAGTCCCG
AGGGCAGACCTCCTATGTGGGTCTGTCCAAAGTGATTCAATTTTCATGTGGGTGCCCCCAAAAGTTGACAAATCCGATGTGGGTGTGCCAAAAATTTCCCAATTTCGTAATGGGTATGTAGACCGAGACGTGGATTTGTCCCGAAGGCTGCAAATTCTGTATGGATTCGTCAAGCAACAGACAAATTCGATGTGGGCTGC
TTCAGAAAGTACAGGAGGACAACAAAATAAACTTCATATAGACAAGGAAGAAAGAAATCCTAGgtgggtacccagcggtccgtccatccatggcctttttctctttaattgctttgcagtttttcatggtgggtataagaagggggtgtgctctggtgtgtgtttgcttgtgaatgtgtcatgattgaatatagaagatt
ccaaggccttgcttgaatttatttgctactgtgtctctggaccagCATTCTCTACAGCAGCAGGATACCTTAGCCAGAATGCAAAGACCTGTGCTAGGTGGACAGCAACAGGCGCAGGCCATACCTTTTACACCACCAACATGGTATCAGTCACCAACAGTGACTCCTTCCATTAATTCGACAAATCCCTCAGCTACATC
TGGAATGGGGCCACCATCAGAAACAAATATGAGTACAAGATTGAATTCAGTTGTAAATCAGGGTGTCACTAGGCCATTCTCTCCTGCTCCAAATGCTCATTTGTTTGATATACTTCCTTCTCTGCAAGGGAAAAGTTTGGATGAACTTGACCTGCTTTTGATGGACAGTAAAGTCTACAATTCTTTTCTACATTCTCTGG
AACCCATGAGACATCTTGATTCGTTGCGAGGAGAACTAACAAAAGGCCATGCAGACCTGGCAAGAAATAATCTCACTAAGGATTCACAGATTGCAGAACTTAGGAATCAGTGTGCTATCATAAGGACAACAGAGTTGGCAGCAGCGAGAGAGAAGTTTGAGGAGGTTCAGAAATGCGAGAAAGAGATCACTGCTAACTTT
TCTTCTTCAGCACTTCTTGGCAGGCTTCAAGAAGCTGCTGCAAAAGTGGATGAAGAATCAGAAATCTTGCATCAGAAGCTTTTATCTAGTGATATCGATCTCAGTGAGTTCATTCAGAAATACAAAAAAGAGAGGATTTTGTATCATAGAAGGATGCTGGTTCATTTTGCAGGCAAAGCATCTTTGGGGAGACCTGGTTA
GATTTTTTATGTATATATCAGTAAATATATTTCAACTGAAATACAAAGAAGACTTCAGAGTGTGTTGAAGGAATAAGTACGAGTATGCTTTCAGAACTTCCATGATTTCAGAACATTAGGAGGTTCTGAAATGTTATTTTTGTCGAGGAACTAAGATGGTACATGCTTAGTAGAAATGGGAGTCCCATCCATGTATTTGT
GGAGACTATTAAGTGAATTTTCTTGCTGTATTAGTAGATTTAAGATTGTGACAAGTCTTATATCTGCCCTTCATTTTGGAGGGAATTCAAATGTAGAGTGTGAGTTTCAGAATTGATGGAAAGAACTTTAGAATTATTAGCCTTTCTTTTCAAATTCTTTCCTATTTTAGCCCAAATAGAGTACATTTATGCTGTGCATT
CATGCTTTAAAATGACACATCCTGAAAACATAGCTAATATAAATGTTTGATAATGCCATTTTGGGAAACTAAATGGTTATTAAGCATATTTGCAAGTGGACAT