sp|O22207|UBP5_ARATH ----> Ubiquitin carboxyl-terminal hydrolase 5
Intron 1 GTATGGGGAT ... TTGACATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.1 | 203 | 420.2 | 337 |
| A2 | 69.93 | 126 | 312 | 274 |
| A3 | 65.19 | 154 | 304.8 | 272 |
| A4 | 66.57 | 117 | 251 | 215 |
| A5 | 65.14 | 61 | 122 | 106 |
| A6 | 67.42 | 217 | 409 | 489 |
| A7 | 64.53 | 420 | 729.7 | 798.7 |
| A8 | 65.47 | 506 | 916.7 | 1002.2 |
| A9 | 67.14 | 339 | 641.3 | 744 |
| A10 | 68.17 | 254 | 521.7 | 566.5 |
>TRINITY_DN114393_c1_g1_i7 from sample A2 / Example spliced isoformCGGCCGTTAGATTCGCTGAAGGCCAGACGCATCACTTGCCGTCGGATCCTCTGAAGTCGACAAGCAGTTACTTGGTAAATCCCTTCCACAACGGGAAAAAATGTCGGTAATAATATTTTGGAAAAGTATGTGCCGGGACTCTTGAGCGTTCGGTCTTTCCCGAAAGATCAAATCTCATTCTGAGTCGTCTGGTGCAAGAC
TAGGGTCGACAGCGGAAGCCGAATCCCAGCCGTCGATCCGGGGGCCGACGAAGGATCGCAGTCGTTGGACCCGTGTCTAGTACAAATCTCGGTATTATGCCGGTTCCCCGGCAGCAGCTAGCCCCTCTGTTTGCGCGGCCGTGAAAATTTCCTCCGAATTCGTTTTACTCAGAAGACAGAACCATCCGACGCCGAGGAAT
TTATTTCGCGTGATCTGTAAGCGGAGTCCGGGGATTTTGTAGCCTGTAAAATGCGATGAGTGTTTGCAGCATGGACGGGGAATTTTCAGAAGTAGCCATGAAAGAGCTGGGCAAGGTTTACATTGCTGACTACAAATGGTGGAAAGATTGGGAAGACACAGCTTGCCAGGATGAGGCAAGAGCCCCAAGCAAAGATTTTA
CTGTCTATTGTTCTAAACTGTGTGAGGCACCTTCCAGTATGCTGAAGAACTTCACAAGCATCAATGGTCCAGATCTAGTATTTGACTTGCTGCGTGAAGACTCTTCTGTTGGATCTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGTCTGGAGGCAGATCCATGCTTGGTATGAT
GGACGGACATCTGCAAAAGATATATTAATATCAGGTTCTTCTTCCCAAGAATATGTGACAGGAGATTTATATCCTTTACGTCTTCGTATGATTGCATCGGCAGAAGGAAATCATATAACTGTTAGAATAAGCAGAGAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGT
TCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGTTGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAA
CTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAGAGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGT
GCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCATTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGC
ACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAAAGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATT
TGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAACAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAG
GACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCACTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCG
GAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAAATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATA
AAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAATACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGAT
GTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGATACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTT
CTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGTTCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAATTGGAGACTTTTGTAAACTTCCCTACTCATGATCTTGACCTAA
CAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATTTAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCTTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTAT
GTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACAACTAAATCACTAGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCATC
GGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATTT
CAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATAG
TCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGATATCTTGTTTGCGTTGTTTCTTGTAATGAGTGACAAATAGCGAGTGATTCTAGTCTCGATAGCAAAACTTTTCTTTGGGTATTGCTTTGGAACAGTACCA
>TRINITY_DN114393_c1_g1_i3 from sample A2 / Example unspliced isoform:GGAGAATATTGTGGAAAAATCTTCAACTTTTCTGACATCTCAAGGAGGTTAGATGTGAAATGAAAATATTTATGTTATGAAAGATGTAGGATATTACATTAGAGAATGCAGCACTTGCTTGTATTGAAACAGGGACAGTGGATTGCATGTATATTGTGGAAATAAGAAGGCAAACAACTAAAATAATTAGGGGCTGTCTG
GTTTGTTATTTTAGTTTTAATCCATCCTAACTGGCATATTGGAATCTTCAAAACTTTGGCATATTTGGGGCCAGGAGAGTTTGATTTGGTGGAATTGTTGTGCAGAAGGTAGAGTTTTAAGGTTGCAAATAGTTAATTCAGGAGTAGTAGACATAGGCATGTCAGTTTTACTTTGTACTAGCAGCGAACATTAATGATTA
GTTTTGGCATCCTATGTAGATTTTTCCTGTTTTTATTTTTTATTTTATTTTATTTTCATCACAAACTTATTGAAAATTTTCCAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGTAAGTATTTGTGTATAATTCATGGTCTTTACTATATACACCTAGTTACTAATGTT
GGTCTCTATTGATTCGTTTAAAGCAGGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGTTGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGA
AATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAGAGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAA
TCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCATTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTG
CATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAAAGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTA
GCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAACAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGT
TACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCACTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACT
CACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAAATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAG
ATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAATACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTT
GACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGATACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAA
TTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGTTCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAATTGGAGACTTTTGTA
AACTTCCCTACTCATGATCTTGACCTAACAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATTTAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCTTGTTAGTGA
AGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACAACTAAATCACTAgtatggggatgctggaactataccatctgtgattttccactgcctttatggtcaact
ggggagaagcttcttgatagctaacatgcttatatatgtttccttggtttgacatcagGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCATCGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTA
GTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATTTCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTT
GGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATAGTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGC
CCGCTAAGGAAGCATGACAGGATATCTTGTTTGCGTTGTTTCTTGTAATGAGTGACAAATAGCGAGTGATTCTAGTCTCGATAGCAAAACTTTTCTTTGGGTATTGCTTTGGAACAGTACCA
Intron 2 GTATGCTTAT ... GTTGGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.18 | 4.3 | 1 | 6 |
| A2 | 34.29 | 6 | 0 | 3 |
| A3 | 22.88 | 11.3 | 0 | 3 |
| A4 | 100 | 0 | 4 | 8 |
| A5 | 42.86 | 4 | 1 | 3 |
| A6 | 19.22 | 12.7 | 0 | 3 |
| A7 | 28.08 | 13.3 | 0 | 5 |
| A8 | 44.84 | 8.7 | 2 | 7 |
| A9 | 11.78 | 15.3 | 0 | 2 |
| A10 | 0 | 7 | 0 | 0 |
>TRINITY_DN46545_c2_g3_i1 from sample A8 / Example spliced isoformGATAAAAGCAATTGATCGGCACACGGTGTGAACTCATATTCAAATTGCATAAACCGTACTAGACCCAATGGATGCATTGTGAAGGCTGATATAGAGGATTATTTAGATGGTGGAAAGATTGGGAAGACGCACCTTGCCAGGATGAGGCAAGAGTGCCCCAAGCAAAGATTTTACTATCTACCGTTCTAAGCTGTGTGAGG
CACCTTCAAGTATGCTGAAGAACTTCACAAGCATCAATGGTCCAGATCTAGTATTTGACTCGCTGCGTGAAGCACGTGAAGCATGAAGACTCTTCTGTCGGATCTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGCCTGGAGGCAGATCCATGCTTGGTGAGCTTGATTCCTTTG
ATGCTTTTCTTTCATTAGAACAAGAAGCATTTCTGAAAATGATTTTAATTTTCTGCAGACATAAGCATGAAAGATTTGAAATCTACACCTACAATAAAGGCATTTGTTTTCATTGTCACTAAGAAATATATAGATGTAATTTGTGAAGATGAAACAGCTGTCATGAATGTTTAAATTCAATTATTTTTAGGAGTTCTTCC
ATTAGAAAAATGAAACGTATTGTATGGAAAATAATGCTTCAGATATTAAACGTC
>TRINITY_DN46545_c2_g3_i7 from sample A8 / Example unspliced isoform:CTCATATTCAAATTGgtatgcttattataacccattacagatgccattcggcaatttcagatccaaaagagttgcaaacagacgagatgttttgaagctttttttgtctggctgacatgattgcatcatgtgttggtacagCATAAACCGTACTAGACCCAATGGATGCATTGTGAAGGCTGATATAGAGGATTATTTAG
GTACTGGCTTCATTATGGATTTTACAGTGCTGGGGTTTGCTGGCAATGGATGGAACGCTACACTTAGGTAAGCCCCGGTAGCATAACCCTCCGTAGGTTCTCCTAGCAGATCTTTGGCAATCGTTTGAAGTTGTAACAACTTTGTTTTCTGGAATTTGTTGTTCAAAAACAATGTTGTTTTGTTTTACGCCTGTGTTATG
GATGCCTCTGGGCATACAGGGTCGATGTAATAAATTTGTAGGTTATTGTACAATGTTTTGGATTCTGAGTTTGAACTAGGCAGTGTACTTCTGTCAACTAGGGTTTCAAGCTCAGTCGAGTTTTCAAATCAGAAGAAAAATTACAAGTCTATGTTGCAGTAGTGGTTTTGTTTCGTAGCTTTTGGGGCTTGGCCCGTGAA
CATGACATGTGACTCGTCGATTAAAATGTAGAAATGAACTTATGTTTTTAGCAAACCTCTGCATTTAACTTTGATGTAATACGAAGTATGATTTGTGAAACTAGGTTTTAATACATCTGTTGCTACTGTTTTCTTTTATGGACTGTGAAACTATGAAATGTAAAACAATGGAAATAGGAAACCATGTGATGTATATGAAT
AATGAGAAGACTGCTGCTGTCACTAAACATGGGGTAGATGTTTGTAATCTATGATATGGTTTTGGCCTGTATGTAGTCCGTC
Intron 3 GTTAGTGGAT ... TGTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.99 | 335 | 0 | 100 |
| A2 | 27.25 | 267 | 0 | 100 |
| A3 | 27.11 | 242 | 6 | 90 |
| A4 | 23.81 | 240 | 0 | 75 |
| A5 | 24.8 | 94 | 0 | 31 |
| A6 | 26.36 | 176 | 0 | 63 |
| A7 | 30.1 | 418 | 0 | 180 |
| A8 | 23.38 | 331 | 0 | 101 |
| A9 | 25.77 | 360 | 0 | 125 |
| A10 | 28.19 | 321 | 0 | 126 |
>TRINITY_DN116291_c3_g5_i1 from sample A3 / Example spliced isoformTTTCAAAAAGCCGTCGGATCACGGGCAACTTACAAGCCCTCCCTGACGGAAGCTGGATTTCCCCGGCCACTCGACACCTACTGCCGTCCACCCCAAGCAGGCAGACGGTGGCCTCCACGTCATCAACGCCCAGGCAGCCACGGCGGCCGTTAGATTCGCTGAAGGCCAGACGCATCACTTGCCGTCGGATCCTCTGAAGT
CGACAAGCAGTTACTTGGTAAATCCCTTCCACAACGGGAAAAAATGTCGGTAATAATATTTTGGAAAAGTATGTGCCGGGACTCTTGAGCGTTCGGTCTTTCCCGAAAGATCAAATCTCATTCTGAGTCGTCTGGTGCAAGACTAGGGTCGACAGCGGAAGCCGAATCCCAGCCGTCGATCCGGGGGCCGACGAAGGATC
GCAGTCGTTGGACCCGTGTCTAGTACAAATCTCGGTATTATGCCGGTTCCCCGGCAGCAGCTAGCCCCTCTGTTTGCGCGGCCGTGAAAATTTCCTCCGAATTCGTTTTACTCAGAAGACAGAACCATCCGACGCCGAGGAATTTATTTCGCGTGATCTGTAAGCGGAGTCCGGGGATTTTGTAGCCTGTAAAATGCGAT
GAGTGTTTGCAGCATGGACGGGGAATTTTCAGAAGTAGCCATGAAAGAGCTGGGCAAGGTTTACATTGCTGACTACAAATGGTGGAAAGATTGGGAAGACACAGCTTGCCAGGATGAGGCAAGAGCCCCAAGCAAAGATTTTACTGTCTATTGTTCTAAACTGTGTGAGGCACCTTCCAGTATGCTGAAGAACTTCACAA
GCATCAATGGTCCAGATCTAGTATTTGACTTGCTGCGTGAAGACTCTTCTGTTGGATCTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGTCTGGAGGCAGATCCATGCTTGGTATGATGGACGGACATCTGCAAAAGATATATTAATATCAGGTTCTTCTTCCCAAGAATATGTG
ACAGGAGATTTATATCCTTTACGTCTTCGTATGATTGCATCGGCAGAAGGAAATCATATAACTGTTAGAATAAGCAGAGAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATAC
GACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGTTGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGA
GAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAGAGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTAT
AGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCATTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATT
AGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAAAGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAG
TGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAACAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTG
ATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCACTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTAC
ACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAAATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAA
GCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAATACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAA
GTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGATACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGA
GCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGTTCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAATTGGAGACTTTTGTAAACTTCCCTACTCATGATCTTGACCTAACAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATG
CTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATTTAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCCTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTA
TTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACTAAATCACTAGTATGGGGATGCTGGAACTATACCATCTGTGATTTTCCACTGCCTTTATGGTCAACTGGGGAGAAGCTTCTTGATAGCTAACATGCTTATATATGTTTCCTTGGTTTGACATCAGGTGTTGTACTGCATTGTAAAGTTTTTCGGA
GAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCATCGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTC
ACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATTTCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCAC
GTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATAGTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGATCTTGTTTGCGTTGTTTCTTGTAATGAGTGACG
>TRINITY_DN116291_c3_g5_i3 from sample A3 / Example unspliced isoform:ATTAGGGCCAGAGGACATGTGgttagtggatttttctgttctttctaatattttacagatttccattcatgcttacaaatggctaccttcctactctttcagtgctgtttttatagttgtgaactgatctatggattctgcttttcgtgcttgtaatgcagGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAA
AAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGTTCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAATTGGAGACTTTTGTAAACTTCCCTACTCATGATCTTGACCTAACAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATG
GAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATTTAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCCTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTC
TTGGACTTTAAGAACAAATTTGACAACTAAATCACTAGTATGGGGATGCTGGAACTATACCATCTGTGATTTTCCACTGCCTTTATGGTCAACTGGGGAGAAGCTTCTTGATAGCTAACATGCTTATATATGTTTCCTTGGTTTGACATCAGGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGT
TTCAACATATATGCTCAGCTTACAGAAGAGTTGCATCGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGG
TCAGCTGATACCCATTCGGTGATTTGTCTCTTAATTTCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGT
AATGACAATTTGGAAGCATAAAATAATGTGCCAATAGTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGATCTTGTTTGCGTTGTTTCTTGTAATGAGTGACG
Intron 4 GTTTTCATAT ... TGCTGGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.94 | 130 | 498 | 457 |
| A2 | 80.06 | 96.7 | 393 | 378 |
| A3 | 81.91 | 87.7 | 415 | 370 |
| A4 | 83.8 | 69.7 | 324 | 377 |
| A5 | 79.72 | 30.3 | 131 | 107 |
| A6 | 84.91 | 63.7 | 324 | 378 |
| A7 | 86.49 | 116 | 721 | 738 |
| A8 | 87.12 | 91 | 541 | 658 |
| A9 | 87.03 | 81 | 527 | 548 |
| A10 | 83.28 | 95 | 478 | 457 |
>TRINITY_DN127009_c2_g1_i12 from sample A1 / Example spliced isoformTTTCCCCGGCCACTCGACACCTACTGCCGTCCACCCCAAGCAGGCAGACGGTGGCCTCCACGTCATCAACGCCCAGGCAGCCACGGCGGCCGTTAGATTCGCTGAAGGCCAGACGCATCACTTGCCGTCGGATCCTCTGAAGTCGACAAGCAGTTACTTGGTAAATCCCTTCCACAACGGGAAAAAATGTCGGTAATAAT
ATTTTGGAAAAGTATGTGCCGGGACTCTTGAGCGTTCGGTCTTTCCCGAAAGATCAAATCTCATTCTGAGTCGTCTGGTGCAAGACTAGGGTCGACAGCGGAAGCCGAATCCCAGCCGTCGATCCGGGGGCCGACGAAGGATCGCAGTCGTTGGACCCGTGTCTAGTACAAATCTCGGTATTATGCCGGTTCCCCGGCAG
CAGCTAGCCCCTCTGTTTGCGCGGCCGTGAAAATTTCCTCCGAATTCGTTTTACTCAGAAGACAGAACCATCCGACGCCGAGGAATTTATTTCGCGTGATCTGTAAGCGGAGTCCGGGGATTTTGTAGCCTGTAAAATGCGATGAGTGTTTGCAGCATGGACGGGGAATTTTCAGAAGTAGCCATGAAAGAGCTGGGCAA
GGTTTACATTGCTGACTACAAATGGTGGAAAGATTGGGAAGACACAGCTTGCCAGGATGAGGCAAGAGCCCCAAGCAAAGATTTTACTGTCTATTGTTCTAAACTGTGTGAGGCACCTTCCAGTATGCTGAAGAACTTCACAAGCATCAATGGTCCAGATCTAGTATTTGACTTGCTGCGTGAAGACTCTTCTGTTGGAT
CTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGTCTGGAGGCAGATCCATGCTTGGTATGATGGACGGACATCTGCAAAAGATATATTAATATCAGGTTCTTCTTCCCAAGAATATGTGACAGGAGATTTATATCCTTTACGTCTTCGTATGATTGCATCGGCAGAAGGAAATCAT
ATAACTGTTAGAATAAGCAGAGAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGT
TGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAG
AGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCA
TTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAA
AGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAA
CAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCA
CTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAA
ATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAA
TACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGAT
ACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGT
TCATCTTAAAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATGTGGGTATTTTCTTATCTAAACGTGATAGTGAAATGTTCTATAGACCAGTATTATGTTTCTAGTATCTAAATTCATCAGATATTTAAC
>TRINITY_DN127009_c2_g1_i8 from sample A1 / Example unspliced isoform:TTTCCCCGGCCACTCGACACCTACTGCCGTCCACCCCAAGCAGGCAGACGGTGGCCTCCACGTCATCAACGCCCAGGCAGCCACGGCGGCCGTTAGATTCGCTGAAGGCCAGACGCATCACTTGCCGTCGGATCCTCTGAAGTCGACAAGCAGTTACTTGGTAAATCCCTTCCACAACGGGAAAAAATGTCGGTAATAAT
ATTTTGGAAAAGTATGTGCCGGGACTCTTGAGCGTTCGGTCTTTCCCGAAAGATCAAATCTCATTCTGAGTCGTCTGGTGCAAGACTAGGGTCGACAGCGGAAGCCGAATCCCAGCCGTCGATCCGGGGGCCGACGAAGGATCGCAGTCGTTGGACCCGTGTCTAGTACAAATCTCGGTATTATGCCGGTTCCCCGGCAG
CAGCTAGCCCCTCTGTTTGCGCGGCCGTGAAAATTTCCTCCGAATTCGTTTTACTCAGAAGACAGAACCATCCGACGCCGAGGAATTTATTTCGCGTGATCTGTAAGCGGAGTCCGGGGATTTTGTAGCCTGTAAAATGCGATGAGTGTTTGCAGCATGGACGGGGAATTTTCAGAAGTAGCCATGAAAGAGCTGGGCAA
GGTTTACATTGCTGACTACAAATGGTGGAAAGATTGGGAAGACACAGCTTGCCAGGATGAGGCAAGAGCCCCAAGCAAAGATTTTACTGTCTATTGTTCTAAACTGTGTGAGGCACCTTCCAGTATGCTGAAGAACTTCACAAGCATCAATGGTCCAGATCTAGTATTTGACTTGCTGCGTGAAGACTCTTCTGTTGGAT
CTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGTCTGGAGGCAGATCCATGCTTGGTATGATGGACGGACATCTGCAAAAGATATATTAATATCAGGTTCTTCTTCCCAAGAATATGTGACAGGAGATTTATATCCTTTACGTCTTCGTATGATTGCATCGGCAGAAGGAAATCAT
ATAACTGTTAGAATAAGCAGAGAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGT
TGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAG
AGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCA
TTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAA
AGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAA
CAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCA
CTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAA
ATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAA
TACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGAT
ACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGT
TCATCTTAAAAGgttttcatatagtcggttcatgaaaaataaattggagacttttgtaaacttccctactcatgatcttgacctaacaaattatgttgctggcaagAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATT
TAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCTTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACAACTAAATCACT
AGTATGGGGATGCTGGAACTATACCATCTGTGATTTTCCACTGCCTTTATGGTCAACTGGGGAGAAGCTTCTTGATAGCTAACATGCTTATATATGTTTCCTTGGTTTGACATCAGGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCAT
CGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATT
TCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATA
GTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGAAAAAAA
Intron 5 GTAAGTATTT ... TTTAAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.37 | 409.7 | 7 | 104 |
| A2 | 17.81 | 341 | 6 | 73 |
| A3 | 19.98 | 447.7 | 1 | 110 |
| A4 | 16.83 | 329.3 | 1 | 66 |
| A5 | 22.05 | 171.7 | 2 | 48 |
| A6 | 15.81 | 64.7 | 0 | 12 |
| A7 | 15.98 | 310.7 | 0 | 58 |
| A8 | 17.09 | 79.3 | 0 | 16 |
| A9 | 16.83 | 215.7 | 1 | 43 |
| A10 | 19.75 | 310 | 2 | 74 |
>TRINITY_DN127009_c2_g1_i8 from sample A1 / Example spliced isoformTTTCCCCGGCCACTCGACACCTACTGCCGTCCACCCCAAGCAGGCAGACGGTGGCCTCCACGTCATCAACGCCCAGGCAGCCACGGCGGCCGTTAGATTCGCTGAAGGCCAGACGCATCACTTGCCGTCGGATCCTCTGAAGTCGACAAGCAGTTACTTGGTAAATCCCTTCCACAACGGGAAAAAATGTCGGTAATAAT
ATTTTGGAAAAGTATGTGCCGGGACTCTTGAGCGTTCGGTCTTTCCCGAAAGATCAAATCTCATTCTGAGTCGTCTGGTGCAAGACTAGGGTCGACAGCGGAAGCCGAATCCCAGCCGTCGATCCGGGGGCCGACGAAGGATCGCAGTCGTTGGACCCGTGTCTAGTACAAATCTCGGTATTATGCCGGTTCCCCGGCAG
CAGCTAGCCCCTCTGTTTGCGCGGCCGTGAAAATTTCCTCCGAATTCGTTTTACTCAGAAGACAGAACCATCCGACGCCGAGGAATTTATTTCGCGTGATCTGTAAGCGGAGTCCGGGGATTTTGTAGCCTGTAAAATGCGATGAGTGTTTGCAGCATGGACGGGGAATTTTCAGAAGTAGCCATGAAAGAGCTGGGCAA
GGTTTACATTGCTGACTACAAATGGTGGAAAGATTGGGAAGACACAGCTTGCCAGGATGAGGCAAGAGCCCCAAGCAAAGATTTTACTGTCTATTGTTCTAAACTGTGTGAGGCACCTTCCAGTATGCTGAAGAACTTCACAAGCATCAATGGTCCAGATCTAGTATTTGACTTGCTGCGTGAAGACTCTTCTGTTGGAT
CTGTGTTTCATGAAACAGTCATGGAAGGTCGTCACTATGTTTTACTCACAGAGGAGGTCTGGAGGCAGATCCATGCTTGGTATGATGGACGGACATCTGCAAAAGATATATTAATATCAGGTTCTTCTTCCCAAGAATATGTGACAGGAGATTTATATCCTTTACGTCTTCGTATGATTGCATCGGCAGAAGGAAATCAT
ATAACTGTTAGAATAAGCAGAGAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGT
TGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGGAATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAG
AGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTTAACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCA
TTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACACCAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAA
AGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATATTGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAA
CAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCCTAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCA
CTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGCTTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAA
ATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTGTCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAA
TACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTCGTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGAT
ACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGACTGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGT
TCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAATTGGAGACTTTTGTAAACTTCCCTACTCATGATCTTGACCTAACAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATT
TAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGTTTCTCTTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACAACTAAATCACT
AGTATGGGGATGCTGGAACTATACCATCTGTGATTTTCCACTGCCTTTATGGTCAACTGGGGAGAAGCTTCTTGATAGCTAACATGCTTATATATGTTTCCTTGGTTTGACATCAGGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCAT
CGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCATAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATT
TCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCTCTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATA
GTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAATCTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGAAAAAAA
>TRINITY_DN127009_c2_g1_i1 from sample A1 / Example unspliced isoform:GAACATTAATGATTAGTTTTGGCATCCTATGTAGATTTTTCCTGTTTTTATTTTTTATTTTATTTTATTTTCATCACAAACTTATTGAAAATTTTCCAGGATAATGAAGGAGAGCTTTATAGGAGAGCGTGCGAACTTTTCAATATTGACTCTGAACAAgtaagtatttgtgtataattcatggtctttactatatacac
ctagttactaatgttggtctctattgattcgtttaaagcagGTTCATATTTGGGATTTGTTCGGGCAGGCAAAACAAGCATTAATTACTAACGAGAATACGACTTCTCAGGATGCCGAAAAACAGATGGGTGAAGATATATTATTGGAGCTACAAGTTGATGGAATTTGGCAGGATGGCAATAGTGGCTTATCGCATGGG
AATGGTTCAGTTGGAAATGAATTAGCTCTAGTCCCATTTGAAACTTCTAGATCAGAACCATCTCTTGCAGGTGGTTCAACCCTAAGCAATAGTACTTTGAGAAGCTCCAGCCCAGACTTATCAGTGACTCACCCTTTGAGCTCATCAAGGATCTTAGAGGGAATAGGTAGCAGTGGTGTTACAGCTGGCCCCGCAGGCTT
AACAGGATTGCATAATCTTGGGAATACTTGTTTCATGAATAGTGCTCTCCAGTGCTTAGTGCATACCCCAAAATTGGTGGAATACTTTCTGGAAGATTATAGCAGGGAAATAAATCGGCAAAATCCTTTGGGCATGGATGGAGAGCTTGCATTAGCATTTGGGGAACTATTAAGGAAACTATGGGCTCCAGGAAAAACAC
CAGTAGCACCACGTGCATTTAAAGCAAAACTAGCTCGTTTTGCACCTCAGTTTAGTGGCTACAATCAACATGACTCACAAGAGCTTCTGGCATTTCTATTAGATGGGCTTCATGAAGATTTAAATCGTGTGAAACACAAACCATACATAGAATCAAAAGATGCAGATGGGCGTCCAGATGAGGAAGTAGCAGAGGAATAT
TGGGAAAATCATCTAGCTCGCAATGACTCTATAATTGTTGATTTGTGCCAAGGTCAGTTCAAGTCAACATTGGTGTGCCCAATATGTAATAAAGTCTCAGTGACATTTGATCCCTTTATGTACTTATCCTTGCCTTTGCCATCAACTACAACTCGAACAATGACAGTGACAGTATTTAGCACGGATGGTAGTTCGCCGCC
TAAACCCTATACTGTTACTGTGCCCAAGCAGGGAAAATGCAAGGACCTTGTGAAGGCTGTAAGCATCGCTTGCTCCTTAAGAAATGACGAGAAGCTTTTGATAGCAGAGATATATAATCATAGAATACTTCGTTACTTGGAAAATCAATTTGATCCACTATCTCCTATTAGGGATGATCAGCACCTTGCAGCATACAGGC
TTTGTCAAGAGGACTCACCGTTGCTGGAATTTATGCATCGTCGGAAGGAGGAAGATTATTTCAGTACTCAAGGTACTGGATATTGGAAACCTTTTGGTACACCTCTGATAACAAGGTTGCAGGATGATGTTCATACCGGAGCTGATCTTCAGGCAAAATTTCAGACTTTGCTTGCTCCCTTGCTGCGAACCAAAAGCTTG
TCATCCTTCACTCAGATGAACATTGCAAAGGAAAATGGTCATAAAATAGAGGCTAGTGAAGATGTGCAGATGGAAGATCTCAATGATCAGCTAAGTATAAGCAATGGGACTTTAGGGGATGATTTCGAAAGCTTATTAAACGATGGTGAAAAGACAATACCCAATGGCCATTCCGGCTGTCCTTTACCCAGTGAACTGTC
GTTCCAGCTAAGTTTGACAGACGAAAAGGGCACAAATAAAGATGTTTTTCTGCAGGCAGATGATCCAGTTTCAATTCCACGTAATTGCAGGCGATTGCAAGTCTTAGTATATTGGCCAGAGAAAATGCTGGACAAGTATGATACACAACTTCTTGATACTTTATCAGAAGTATTGAAGTTTGGCTTTGCTTCAAAGCGAC
TGAATCAGGATTCAATTTCCTTATATCAATGCCTGGAGGCTTTCTTAAAGGAGGAGCCATTAGGGCCAGAGGACATGTGGTATTGTCCTTCTTGCAAAGAGCATCGTCAAGCTAGTAAAAAATTGGATTTATGGAGGTTGCCTGAAATTCTTGTTGTTCATCTTAAAAGGTTTTCATATAGTCGGTTCATGAAAAATAAA
TTGGAGACTTTTGTAAACTTCCCTACTCATGATCTTGACCTAACAAATTATGTTGCTGGCAAGAATGGGCCTCGTCAATCGAATGTTTATGAGCTGTATGCTGTGAGTAACCATTATGGAAGCATGGGAGGCGGCCATTACACAGCATATGTAAATTTAATAGAGGAGAACGGGTGGTATAATTTTGATGACAGCCACGT
TTCTCTTGTTAGTGAAGATAGGATAAAGACATCTGCTGCTTATGTTCTCTTCTATAGAAGAGTCAAACCTGAAGATCACTCAGCAAAGAATGGAGGACTATTCACGTCATAGAGATTCTTGGACTTTAAGAACAAATTTGACAACAACTAAATCACTAGTATGGGGATGCTGGAACTATACCATCTGTGATTTTCCACTG
CCTTTATGGTCAACTGGGGAGAAGCTTCTTGATAGCTAACATGCTTATATATGTTTCCTTGGTTTGACATCAGGTGTTGTACTGCATTGTAAAGTTTTTCGGAGAATTTGATCAAAGCTGTTTCAACATATATGCTCAGCTTACAGAAGAGTTGCATCGGCTGAAAAATGCAAGCGGAAAGTTTCTTCTGGTTTGAAGCA
TAAATAACCTTATTAGTGCTGAATGAGGATATTCAAGGGAAAGGAAACGGTCAATCCTGGCTTCAACCAAGGTGATAGGTTTGATGGACCAATTTTTGTTTTCACTTGCTAACAATTGTGGTCAGCTGATACCCATTCGGTGATTTGTCTCTTAATTTCAATCGATTCATTTTTCTTCATGATTCGTTAGTATATCTCCT
CTGTTTCTGGCACTTGGTGACTGGGTGTCTTTTGAAGTCTATCTTGCTGATGCCTTGCTAAGACCGTCATATTCTAACAGGATCATTGGAATTTAAATTGCACGTGTAACATGTTTGTAGTAATGACAATTTGGAAGCATAAAATAATGTGCCAATAGTCTCTTATGATGTAAAATGTTTAAATTTTGATGTATGAGAAT
CTTGCAATTAAGAGCCCGCTAAGGAAGCATGACAGGAAAAAAA