sp|Q84T03|RH27_ORYSJ ----> DEAD-box ATP-dependent RNA helicase 27
Intron 1 GTATATGTTC ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 4 | 8 | 2 |
| A2 | 33.33 | 11 | 4 | 7 |
| A3 | 3.03 | 16 | 1 | 0 |
| A4 | 0 | 5 | 0 | 0 |
| A5 | 20 | 4 | 0 | 2 |
| A6 | 9.09 | 25 | 2 | 3 |
| A7 | 25 | 9 | 6 | 0 |
| A8 | 14.29 | 12 | 2 | 2 |
| A9 | 13.64 | 19 | 0 | 6 |
| A10 | 9.09 | 10 | 0 | 2 |
>TRINITY_DN105789_c0_g1_i4 from sample A2 / Example spliced isoformTAAAATATAGAATCCTTAACCTAAAACATTTTTGAAAGAAAGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGAGGTTCGAATCCTTCGCAC
GACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATTAAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACGGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAAGAAAAACAAGAGAAAAAA
CGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGCAGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGTTTGGCTCTCTTAAGCTCT
CGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTTGAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACACCCCGCAATGGTACCGGT
GTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACTTGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAA
AGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTGCTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTG
GAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTCTTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTT
GATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGA
AGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACC
TATTAGCATACAATTCCCATTCCATGAAGGATATATTCAACGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGGAAAAGCAGATGGTAGGAAGAGTGGC
CATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTGCATTAAAACCTAATTGCTAACATTC
ATCCTCCACTACAGTTGTGTATTTGTATTAGTGCAGTGCATTAATTATTTTTTAGTCCAGGAGAGTGGTTATCATTAGCAATTATCTCATATGTTTATTAAGGCTATAGTGCAGCATATCTTACACACAGGACCCGTTTTGGCAGCAGAAA
>TRINITY_DN105789_c0_g1_i1 from sample A2 / Example unspliced isoform:TAAAATATAGAATCCTTAACCTAAAACATTTTTGAAAGAAAGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGAGGTTCGAATCCTTCGCAC
GACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATTAAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACGGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAAGAAAAACAAGAGAAAAAA
CGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGCAGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGTTTGGCTCTCTTAAGCTCT
CGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTTGAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACACCCCGCAATGGTACCGGT
GTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACTTGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAA
AGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTGCTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTG
GAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTCTTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTT
GATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGgtatatgttctcacctacttttctgtttcgtagtttgtgttttgttttgattaaaatcatttttcaccctgagtagt
gggttagtaaactatgagtaagtattttctgcatgaaatacagaataccacaccactggacatttggcagggaaatatgctactgtacatgaatgcagaaacatagacttacactggaattagatgacaaaatagtttttcttggtggcaaactttctaaatgtagtgtaaaatttcaagactctactaaacactggagg
gagcaatatgcaattgcaagtagttatttataggattaagtttgttttgaattatttctgacaatttaaactttttcatgcagGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAG
GAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTCAA
CGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGGAAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTG
AAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTGCATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTGTGTATTTGTATTAGTGCAGTGCA
TTAATTATTTTTTAGTCCAGGAGAGTGGTTATCATTAGCAATTATCTCATATGTTTATTAAGGCTATAGTGCAGCATATCTTACACACAGGACCCGTTTTGGCAGCAGAAA
Intron 2 GTATATGTTC ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.71 | 4.3 | 8 | 2 |
| A2 | 33.33 | 11 | 4 | 7 |
| A3 | 3.03 | 16 | 1 | 0 |
| A4 | 0 | 5 | 0 | 0 |
| A5 | 20 | 4 | 0 | 2 |
| A6 | 8.88 | 25.7 | 2 | 3 |
| A7 | 25 | 9 | 6 | 0 |
| A8 | 14.29 | 12 | 2 | 2 |
| A9 | 13.64 | 19 | 0 | 6 |
| A10 | 9.09 | 10 | 0 | 2 |
>TRINITY_DN114418_c0_g2_i9 from sample A1 / Example spliced isoformGGGCACAAGGTTATACTTGCATCACATTTTTTTTGTCTGACCTTAGAAGTGTTTCGAGAAACACAGCTCAAGGGTTTACACCACATGGGGTATCTAAACCACTGTGTTTTATTTTGTAACTTTTGTAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAA
CTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTGCTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATT
TTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTCTTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAG
CCCGAGGACTTGACATCCCAGCCGTGGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAA
TATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTCAACGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCC
TAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGGAAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTT
CTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTGCATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTG
>TRINITY_DN114418_c0_g2_i4 from sample A1 / Example unspliced isoform:CACAAAAATCACACTACTTAAAATATAGAATCCTTAACCTAAAACATTTTTGAAAGAAAGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGA
GGTTCGAATCCTTCGCACGACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATTAAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACGGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAA
GAAAAACAAGAGAAAAAACGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGCAGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGT
TTGGCTCTCTTAAGCTCTCGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTTGAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACA
CCCCGCAATGGTACCGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACT
TGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTG
CTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTC
TTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGgtatatgttct
cacctacttttctgtttcgtagtttgtgttttgttttgattaaaatcatttttcaccctgagtagtgggttagtaaactatgagtaagtattttctgcatgaaatacagaataccacaccactggacatttggcagggaaatatgctactgtacatgaatgcagaaacatagacttacactggaattagatgacaaaata
gtttttcttggtggcaaactttctaaatgtagtgtaaatttcaagactctactaaacactggagggagcaatatgcaattgcaagtagttatttataggattaagtttgttttgaattatttctgacaatttaaactttttcatgcagGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACA
GGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCT
GCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTCAACGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGG
AAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTG
CATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTG
Intron 3 GTTTGCCCTT ... TGGCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.17 | 24 | 12 | 23 |
| A2 | 12.82 | 17 | 1 | 4 |
| A3 | 22.58 | 24 | 4 | 10 |
| A4 | 48.72 | 10 | 8 | 11 |
| A5 | 21.43 | 11 | 1 | 5 |
| A6 | 36.67 | 38 | 16 | 28 |
| A7 | 27.47 | 33 | 10 | 15 |
| A8 | 20.48 | 33 | 1 | 16 |
| A9 | 14.55 | 47 | 4 | 12 |
| A10 | 9.33 | 34 | 5 | 2 |
>TRINITY_DN114418_c0_g2_i4 from sample A1 / Example spliced isoformCACAAAAATCACACTACTTAAAATATAGAATCCTTAACCTAAAACATTTTTGAAAGAAAGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGA
GGTTCGAATCCTTCGCACGACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATTAAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACGGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAA
GAAAAACAAGAGAAAAAACGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGCAGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGT
TTGGCTCTCTTAAGCTCTCGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTTGAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACA
CCCCGCAATGGTACCGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACT
TGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTG
CTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTC
TTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGGTATATGTTCT
CACCTACTTTTCTGTTTCGTAGTTTGTGTTTTGTTTTGATTAAAATCATTTTTCACCCTGAGTAGTGGGTTAGTAAACTATGAGTAAGTATTTTCTGCATGAAATACAGAATACCACACCACTGGACATTTGGCAGGGAAATATGCTACTGTACATGAATGCAGAAACATAGACTTACACTGGAATTAGATGACAAAATA
GTTTTTCTTGGTGGCAAACTTTCTAAATGTAGTGTAAATTTCAAGACTCTACTAAACACTGGAGGGAGCAATATGCAATTGCAAGTAGTTATTTATAGGATTAAGTTTGTTTTGAATTATTTCTGACAATTTAAACTTTTTCATGCAGGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACA
GGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCT
GCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTCAACGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGG
AAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTG
CATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTG
>TRINITY_DN114418_c0_g2_i13 from sample A1 / Example unspliced isoform:CACAAAAATCACACTACTTAAAATATAGAATCCTTAACCTAAAACATTTTTGAAAGAAAGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGA
GGTTCGAATCCTTCGCACGACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATTAAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACGGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAA
GAAAAACAAGAGAAAAAACGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGCAGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGT
TTGGCTCTCTTAAGCTCTCGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTTGAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACA
CCCCGCAATGGTACCGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACT
TGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTG
CTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGATTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTC
TTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGGATTGGATTAT
CCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCGAGGAGTTACAGTTTCTTCGATACCTGAAGgtttgccctttcacattcttctctgttcagtgcattgataaaatataactttccatttaatttactc
tatttggcttgtagGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTCAACGTACATCGTCTT
GACCTTC
Intron 4 GTAAAACTTT ... TTTATGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.03 | 10 | 3 | 6 |
| A2 | 26.53 | 18 | 12 | 1 |
| A3 | 34.43 | 20 | 10 | 11 |
| A4 | 30.91 | 19 | 9 | 8 |
| A5 | 40 | 6 | 6 | 2 |
| A6 | 33.33 | 16 | 13 | 3 |
| A7 | 21.21 | 26 | 7 | 7 |
| A8 | 33.33 | 24 | 12 | 12 |
| A9 | 27.27 | 24 | 12 | 6 |
| A10 | 11.11 | 4 | 0 | 1 |
>TRINITY_DN110001_c0_g1_i8 from sample A3 / Example spliced isoformGAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTCATGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGAGGTTCGAATCCTTCGCACGACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATT
AAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACCGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAAGAAAAACAAGAGAAAAAACGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGC
AGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGTTTGGCTCTCTTAAGCTCTCGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTT
GAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACACCCCGCAATGGTACCGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCA
GATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACTTGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCG
ATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTGCTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGA
TTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTCTTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAAC
CACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCG
AGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTC
AACGTACATCGTCTTGACCTTCAGGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGCAGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGGAAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTC
TGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTAACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTGCATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTGTGTATTTGTATTAGTGCAGTG
CATTAATTATTTTTTAGTCCAGGAGAGTGGTTATCATTAGCAATTATCTCATATGTTTATTAAGGCTATAGTGCAGCATATCTTACACACAGGACCCGTTTTGGCAGCAGAAAAATCAACTGCTGTCCATGAAAGTTTGGTTGTCTATGGAAGTCTTTCAGATCAGTGTACAATGACATCTCAGACATGACACAGATTAC
AAATTTTCTGGAGGGCCTTGATCTAAATTCGAATGGGGTTGGTATTTGTACTATTAATATTGAATCTATTTATCACAAAAATCACCTTGCATAGTTGGGTGTGATAATTGCATGGTTGTCTATCTTAGCGTGAATGGGACTTCTATAAGCATTTGAACTGGAAATTCTCATCATGGTTGAGCTATGTAGACCAAGGCGCT
GTTTTAAT
>TRINITY_DN110001_c0_g1_i4 from sample A3 / Example unspliced isoform:GAAATATTAAAAGTTTGGAAGACTAGGGCAAAGGCTAGTCTCTGCAACTCATGCGTCCATAGCTTGCAAGCAACAGGAGTTTTGTTATTGAAGGAGCTGGAGAACCGAAGGCAAAGCAGCGCTGCGATGGAAGAGGAAGTAGGAGGTTCGAATCCTTCGCACGACGACGGTGAAGCAACAAACGCAGCAATTAAAAAATT
AAAGAAAAAGAAGAGAATTCATAAGAGAAACGTAGACCGTTCAGAGGAACCCAATAACGGCGGCGAAGTTGAAAGCAATGGGGTCAACGGCTGCAATGAAACAAACGGGGAAGGATTTAGCGAAGGAAAGAAAGAGAAGAAGAAGAAAAACAAGAGAAAAAACGGCCCTGTAGATGAACAGCGGGATGGCGAAGAAAAGC
AGCAGGAAAGTGAAGTTATCGACGGGGTAAACAATGATAGCGATAAAAAAGCTGAGAGTAAGAAGTCCAAGAAGATAAAATTCTCCATCGAGAAACTCGAAGGGGGCACTGTTGACGTTTCCGGTATCATGAGCGCTGTTTCGTTTGGCTCTCTTAAGCTCTCGGAGCCGACCGTTAATGCTATCAAAGATATGGGGTTT
GAGAATATGACAGAGATTCAGGCCAGATCTATTCCAGAGCTCCTGAAAGGTTCTAATGTATTGGGAGCTGCAAGGACTGGCTCGGGGAAGACACTTGCATTTTTAATTCCAGCCGTGGAACTGTTGTACCATATATGTTTTACACCCCGCAATGGTACCGGTGTGATCATCATCTCTCCAACTCGAGAGCTTGCAATGCA
GATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGCTTGGTTATAGGAGGTGCTGCACGTAGGGTCGAGGCAGAGCGACTTGCTAAAGGAGTAAACTTATTGGTTGGCACTCCTGGTAGACTTCTTGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCG
ATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAGATTATTAAACTTCTTCCAAAGGAGAGGCAAACTGCCCTTTTTTCTGCTACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCCACAGTAGAAGGA
TTAGAACAAGGCTATTGTGTTGTGCCAAGTGCAAATAGGTTTCTTCTTTTATTCACATTTTTGAAGAAAAATAAGTCAAAAAAGATTATGGTCTTCTTTTCATCTTGTAACTCAGTAAAATTCCACAGTGAACTTCTCAACTACATCGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAAC
CACGTACTTCGACTTTTGTAGTGCTGAGACGGGTGTGTTACTTTGTACTGATGTTGCAGCCCGAGGACTTGACATCCCAGCCGTGGATTGGATTATCCAGTATGATCCTCCCGATGATCCAAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGCGAGAGGCAAAGCTTTGTTATTTCTCATTCCCG
AGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCCAAAGTACCACTGCAGGAGTATCAATATGATGAGAAGAAGACTGCAAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCACCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCATACAATTCCCATTCCATGAAGGATATATTC
AACGTACATCGTCTTGACCTTCAGgtaaaactttgaggcaacaatatgatataatactgagtttgagatttttatacgttctcatacagaagtgttgctgatattttatggcgattgaattattctttatgatagGCTGTGGCTACATCTTTTGGATTCACTTGTCCTCCTAAGGTGAACCTCAGCATTGATAGCAATGC
AGCAAAATTTAGAAAGAAAGCGGGGAATCCTGTACAAGGTGGGAAAGGAAAAGCAGATGGTAGGAAGAGTGGCCATACTTTTAGTTCAAGCAACCCTTATGGAAAACGTTCTGAAGGAGACAAGAGGCAATTTGTGCGCTATTAAGAGCAGTGCCTTCAGTTCTAATCTTCTTGACAGAAGTTTCCGGCATATAAATTTA
ACAAACATTGGAAAATTTTTTTGTTCTCGAAGAGGTTTTAATGGAGTGCATTAAAACCTAATTGCTAACATTCATCCTCCACTACAGTTGTGTATTTGTATTAGTGCAGTGCATTAATTATTTTTTAGTCCAGGAGAGTGGTTATCATTAGCAATTATCTCATATGTTTATTAAGGCTATAGTGCAGCATATCTTACACA
CAGGACCCGTTTTGGCAGCAGAAAAATCAACTGCTGTCCATGAAAGTTTGGTTGTCTATGGAAGTCTTTCAGATCAGTGTACAATGACATCTCAGACATGACACAGATTACAAATTTTCTGGAGGGCCTTGATCTAAATTCGAATGGGGTTGGTATTTGTACTATTAATATTGAATCTATTTATCACAAAAATCACCTTG
CATAGTTGGGTGTGATAATTGCATGGTTGTCTATCTTAGCGTGAATGGGACTTCTATAAGCATTTGAACTGGAAATTCTCATCATGGTTGAGCTATGTAGACCAAGGCGCTGTTTTAAT