sp|F4KBP5|CHR4_ARATH ----> Protein CHROMATIN REMODELING 4

Intron 1 GTAAAGAATC ... AATATGTCAG

Found issues: Low number of reads

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.74	8	4	7
A2	33.33	4	0	4
A3	71.43	2	2	8
A4	66.67	1	1	3
A5	100	0	0	4
A6	81.82	1	2	7
A7	77.78	1	5	2
A8	33.33	1	0	1
A9	60	1	2	1
A10	33.33	5	0	5

>TRINITY_DN121296_c1_g2_i4 from sample A1 / Example spliced isoform

TACGTTAGCGCCGTCTATTGAGGTATTTCGTAAAAAAAAATGGACTTATTTGTTTTACGGCCGTTGTTTTGATCTGATTTGTATCGAATTTCATGCCTCATTGAATGAATTCCATGAAACACTATGCCTTAGGTAGGATGCATTTTTTTCTTCGAGTTTGCCTGTTTTCAGCCGTCGTTTTGATATAATTCCTTCAAAAC
TTGTGCATGAACTCGGACAATCGTATGTATTTAGGGGCATGGATATGGCTTCTCAACTCCTCTTTCCTCGCCCTTTGATTTGATATAATTTCCGATGAAATCTTTCCTGCTACAAATAATTCCGCGAAAGCCCAATGCATTAAGGTTGGAGAGCTCTGTCGAGAACGAAAATCTGTGCAGGCTGGCGGCAGAGTATTTGC
TCGTCTGGCCATTCTTTTCATAAAATATGCGTAAACTGCAATGAAACCCTTAGAGCAAACCCTAGTGAGCTTTGCGGTCTCCTCTGTTATGAAACGATCTATGGTTACCGCATCTCGTCTGGACCATGAGCGACCTGTTTTCACAGGTGGGATGGCCTCGGAGGCGAACTTTTAATTACAAGCACTTCTGTTCAGCTAAG
CTGCCGTAACAGGGGGCGCACTGTTCTGCGAAAATCACCCAGGACATACATCTGGCCGCAAATGCATATTCGTGCTTCCGGTGGAATTCTTGAATATTTTACTTGCGGTTACACAAGAGGCTGATAAAAATTCGAAGCAAGGAATGAACTGAATAATTTGTGCTAAGTATAGATGAGTTGAATATTTTAATAAATTCCTG
GCAACGTTTGTTGAATAAACGAGTAACACAGGGCAGAAGAGGCATCATTACGGCATCGTCTGGCAGAAGCTTCTAGATTCAAAACATGCAATACAGGTCCAGGTCTAGAAGTTCCACAGTTAAAGTTCTTGCACATTTTTCCCAGACATGGACAGGTGAGGTGGATTGAATGATGAAGTGCAGGCATTGTGTTACAGC

>TRINITY_DN121296_c1_g2_i1 from sample A1 / Example unspliced isoform:

AGGGTTTGGTGCCGCTGAATGCCCGGGGTGGAAAGGTTGACTCGAGCAGATTTACGTTAGCGCCGTCTATTGAGGGGCATGGATATGGCTTCTCAACTCCTCTTTCCTCGCCCTTTGATTTGATATAATTTCCGATGAAATCTTTCCTGCTACAAATAATTCCGCGAAAGCCCAATGCATTAAGGTTGGAGAGCTCTGTC
GAGAACGAAAATCTGTGCAGGCTGGCGGCAGAGTATTTGCTCGTCTGGCCATTCTTTTCATAAAATATGCGTAAACTGCAATGAAACCCTTAGAGCAAACCCTAGTGAGCTTTGCGGTCTCCTCTGTTATGAAACGATCTATGGTTACCGCATCTCGTCTgtaaagaatcaatgatttttctttacatatatatgcgtgg
gtatgcttttgaaattgtttcgtttaacctcaagaagcataacaattagcctgaatatgtcagGGACCATGAGCGACCTGTTTTCACAGGTGGGATGGCCTCGGAGGCGAACTTTTAATTACAAGCACTTCTGTTCAGCTAAGCTGCCGTAACAGGGGGCGCACTGTTCTGCGAAAATCACCCAGGACATACATCTGGCC
GCAAATGCATATTCGTGCTTCCGGTGGAATTCTTGAATATTTTACTTGCGGTTACACAAGAGGCTGATAAAAATTCGAAGCAAGGAATGAACTGAATAATTTGTGCTAAGTATAGATGAGTTGAATATTTTAATAAATTCCTGGCAACGTTTGTTGAATAAACGAGTAACACAGGGCAGAAGAGGCATCATTACGGCATC
GTCTGGCAGAAGCTTCTAGATTCAAAACATGCAATACAGGTCCAGGTCTAGAAGTTCCACAGTTAAAGTTCTTGCACATTTTTCCCAGACATGGACAGCTAGCATTGACCAGGTTCGGGAAGATAGCAAAGGAAAGGAACTACTCCGTTCAAGCACAAGCAAGGCCCCTTACTTTGTTGGATGAAAAGAAGCAGCTGCTC
GCCTACCCTATAATGTAATCAGGGGAAC

Intron 2 GTATTTCGTA ... ATGTATTTAG

Found issues: Low number of reads

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.86	4	0	6
A2	60	2	6	0
A3	33.33	2	1	1
A4	60	1	2	1
A5	0	1	0	0
A6	0	2	0	0
A7	33.33	1	0	1
A8	17.65	7	0	3
A9	5.26	9	0	1
A10	0	3	0	0

>TRINITY_DN121296_c1_g2_i1 from sample A1 / Example spliced isoform

AGGGTTTGGTGCCGCTGAATGCCCGGGGTGGAAAGGTTGACTCGAGCAGATTTACGTTAGCGCCGTCTATTGAGGGGCATGGATATGGCTTCTCAACTCCTCTTTCCTCGCCCTTTGATTTGATATAATTTCCGATGAAATCTTTCCTGCTACAAATAATTCCGCGAAAGCCCAATGCATTAAGGTTGGAGAGCTCTGTC
GAGAACGAAAATCTGTGCAGGCTGGCGGCAGAGTATTTGCTCGTCTGGCCATTCTTTTCATAAAATATGCGTAAACTGCAATGAAACCCTTAGAGCAAACCCTAGTGAGCTTTGCGGTCTCCTCTGTTATGAAACGATCTATGGTTACCGCATCTCGTCTGTAAAGAATCAATGATTTTTCTTTACATATATATGCGTGG
GTATGCTTTTGAAATTGTTTCGTTTAACCTCAAGAAGCATAACAATTAGCCTGAATATGTCAGGGACCATGAGCGACCTGTTTTCACAGGTGGGATGGCCTCGGAGGCGAACTTTTAATTACAAGCACTTCTGTTCAGCTAAGCTGCCGTAACAGGGGGCGCACTGTTCTGCGAAAATCACCCAGGACATACATCTGGCC
GCAAATGCATATTCGTGCTTCCGGTGGAATTCTTGAATATTTTACTTGCGGTTACACAAGAGGCTGATAAAAATTCGAAGCAAGGAATGAACTGAATAATTTGTGCTAAGTATAGATGAGTTGAATATTTTAATAAATTCCTGGCAACGTTTGTTGAATAAACGAGTAACACAGGGCAGAAGAGGCATCATTACGGCATC
GTCTGGCAGAAGCTTCTAGATTCAAAACATGCAATACAGGTCCAGGTCTAGAAGTTCCACAGTTAAAGTTCTTGCACATTTTTCCCAGACATGGACAGCTAGCATTGACCAGGTTCGGGAAGATAGCAAAGGAAAGGAACTACTCCGTTCAAGCACAAGCAAGGCCCCTTACTTTGTTGGATGAAAAGAAGCAGCTGCTC
GCCTACCCTATAATGTAATCAGGGGAAC

>TRINITY_DN121296_c1_g2_i4 from sample A1 / Example unspliced isoform:

TACGTTAGCGCCGTCTATTGAGgtatttcgtaaaaaaaaatggacttatttgttttacggccgttgttttgatctgatttgtatcgaatttcatgcctcattgaatgaattccatgaaacactatgccttaggtaggatgcatttttttcttcgagtttgcctgttttcagccgtcgttttgatataattccttcaaaac
ttgtgcatgaactcggacaatcgtatgtatttagGGGCATGGATATGGCTTCTCAACTCCTCTTTCCTCGCCCTTTGATTTGATATAATTTCCGATGAAATCTTTCCTGCTACAAATAATTCCGCGAAAGCCCAATGCATTAAGGTTGGAGAGCTCTGTCGAGAACGAAAATCTGTGCAGGCTGGCGGCAGAGTATTTGC
TCGTCTGGCCATTCTTTTCATAAAATATGCGTAAACTGCAATGAAACCCTTAGAGCAAACCCTAGTGAGCTTTGCGGTCTCCTCTGTTATGAAACGATCTATGGTTACCGCATCTCGTCTGGACCATGAGCGACCTGTTTTCACAGGTGGGATGGCCTCGGAGGCGAACTTTTAATTACAAGCACTTCTGTTCAGCTAAG
CTGCCGTAACAGGGGGCGCACTGTTCTGCGAAAATCACCCAGGACATACATCTGGCCGCAAATGCATATTCGTGCTTCCGGTGGAATTCTTGAATATTTTACTTGCGGTTACACAAGAGGCTGATAAAAATTCGAAGCAAGGAATGAACTGAATAATTTGTGCTAAGTATAGATGAGTTGAATATTTTAATAAATTCCTG
GCAACGTTTGTTGAATAAACGAGTAACACAGGGCAGAAGAGGCATCATTACGGCATCGTCTGGCAGAAGCTTCTAGATTCAAAACATGCAATACAGGTCCAGGTCTAGAAGTTCCACAGTTAAAGTTCTTGCACATTTTTCCCAGACATGGACAGGTGAGGTGGATTGAATGATGAAGTGCAGGCATTGTGTTACAGC