NA ----> NA

Intron 1 GTAGGTCGAT ... ACTGGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	3	0	3
A2	83.33	0.3	1	1
A3	42.86	4	0	3
A4	0	1	0	0
A5	33.33	4	0	2
A6	43.56	36.3	2.3	28
A7	48.75	41	4	39
A8	53.66	19	0	22
A9	46.88	17	2	15
A10	39.77	13.7	2	9

>TRINITY_DN37454_c0_g1_i1 from sample A6 / Example spliced isoform

CTTTGAAATTTTGGATGTTTCAATTGTTTTTATGTCAAAACTTTGAAATTTTGGATGTTTCAATTGTTTTTATGTCAAAACTTTGAAATTTTGGATGTTTCAACGGTTTTTGATGATGTCAAATCAGCTTTTACCATCAAAATAGACATTAAAACACAATTAAATTCAAATTCTCCAAACTAAAAAACACCAAATTCCAA
CTAAAAATTTCCTTGATACAATCTTTACAATCAAGTAGGCGTGCAATTACCAAATTTTACCCCTATAAATAGCTCCATATGTCTTTCTGTTTCACTCTGTATTTTATTTTCTCTGCATATTTTGCTATTAGTGCATGCTGCGATTCTGCTCTGCTGATATATAGGTCTAAGGATCGATCCTGTAAGAAAAACTCTAATGT
CTTCTTCAAGCCGCAAGTATGATAGTAAGGGCGGAGGCGGATCTTCTTCAAAGAATGCTGCTGTTGCTGCGCCCAAGGGGAAAGGAACAACAACAGGTAGGGCGACGAAGATGGAACCACCGAAGGAGAAACCAGTGAGCAAGTTTAAGGATATGCTCATGCACGGCGTGAAGCCCTGGGATTCCGATGCCAAGGAATTC
TATGGAAGCCTTGTAGAGGCTCGCAGGCAGGTAGACGCGCAGGAGGACCGGGATGATTACTACTGAATGATCAAATATTGTATATTTTCTTCGGTAAATATAATCAAGGGGAAGGAAAGGAAAGCGGATTGGACTGTTCTTTCCGTTTTCGTCTTCAAGGGGTTTGCCATTTTGTAGCCTTGGCTCCTGTTTCTGTTCAT
AAATAAATCTGTGTGTTTTTCTTCTTCTTAAATAAATCTGTGTGTTTTTCTAAAA

>TRINITY_DN37454_c0_g1_i2 from sample A6 / Example unspliced isoform:

CTTTGAAATTTTGGATGTTTCAATTGTTTTTATGTCAAAACTTTGAAATTTTGGATGTTTCAATTGTTTTTATGTCAAAACTTTGAAATTTTGGATGTTTCAACGGTTTTTGATGATGTCAAATCAGCTTTTACCATCAAAATAGACATTAAAACACAATTAAATTCAAATTCTCCAAACTAAAAAACACCAAATTCCAA
CTAAAAATTTCCTTGATACAATCTTTACAATCAAGTAGGCGTGCAATTACCAAATTTTACCCCTATAAATAGCTCCATATGTCTTTCTGTTTCACTCTGTATTTTATTTTCTCTGCATATTTTGCTATTAGTGCATGCTGCGATTCTGCTCTGCTGgtaggtcgatggtagagaaacccttgtggttacatccatcaaga
ttttgcaatgttttcgacttctcttttctttctttctttttgcatgctgcttgataaatctgaatatataactccttttgcgtgactggtgcagATATATAGGTCTAAGGATCGATCCTGTAAGAAAAACTCTAATGTCTTCTTCAAGCCGCAAGTATGATAGTAAGGGCGGAGGCGGATCTTCTTCAAAGAATGCTGCT
GTTGCTGCGCCCAAGGGGAAAGGAACAACAACAGGTAGGGCGACGAAGATGGAACCACCGAAGGAGAAACCAGTGAGCAAGTTTAAGGATATGCTCATGCACGGCGTGAAGCCCTGGGATTCCGATGCCAAGGAATTCTATGGAAGCCTTGTAGAGGCTCGCAGGCAGGTAGACGCGCAGGAGGACCGGGATGATTACTA
CTGAATGATCAAATATTGTATATTTTCTTCGGTAAATATAATCAAGGGGAAGGAAAGGAAAGCGGATTGGACTGTTCTTTCCGTTTTCGTCTTCAAGGGGTTTGCCATTTTGTAGCCTTGGCTCCTGTTTCTGTTCATAAATAAATCTGTGTGTTTTTCTTCTTCTTAAATAAATCTGTGTGTTTTTCTAAAA