NA ----> NA
Intron 1 GTCAGTTAGT ... TTGATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.21 | 3 | 0 | 16 |
| A2 | 76.19 | 5 | 2 | 16 |
| A3 | 90 | 3 | 1 | 27 |
| A4 | 100 | 0 | 1 | 20 |
| A5 | 85.71 | 1 | 2 | 6 |
| A6 | 90.91 | 1 | 2 | 10 |
| A7 | 75 | 1 | 2 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 75 | 1 | 0 | 3 |
| A10 | 73.68 | 5 | 0 | 14 |
>TRINITY_DN40389_c0_g1_i1 from sample A10 / Example spliced isoformGCTTCTCTGTATGAAATCCCATTTCCCATTGCAATTATTCAACAAACCAACACAATCTCGCCGACATTGTTATCATTCGGAGTACAAGAAGCACACGCTTCCTAGATCGGAACAAGTTTATAACTATGGAGCACCAACTCAGGCCCAATGAGCCTTTCATATTTGGCACACATCCTTGTGCTTCTGTGGGGATCGTCAGA
GAGATCAGCACTATTCTTCAAACTCCGGCTGCGTTTGGATGCGGGATCGAATCCACGGAGATACTTAATGTTTCTATCACTTCCAGTACCACTGACGCCCCTGAAGACCACCGCCAGGAATTTGTGAGTTTCAGCTCTACCAAACAGTCTGCACAGGATTTTGATTCCAAGGAAAATAATGACGAGGGCTTCGATTATAG
CTCTCAAAACCGGGATTCTGAAATCAATGGGCCAGTTACTGAAACAGTAGGTGATGCTGTTGAACCAGAGCAGGCCGATTCAAGCTGCGTAAAGAGGTCATCTAGTAAGAGTACAGGTATGGAACAAATTGCATATGAATCAAATACGAAGGAAAACAACAGGGAAATGAACGAAGACGAAATCAGCAGCGGAAAGAAAG
GGGGAGAGCCAATGTCTCCTGTATCTTCCACCACTGCTCCTCTCCTTACCAGACTGGATCGTCTCGATGTCGTTCTTGCATATCTAGAGGAGAAAAGTTTATCCAGTGGGCATTCTACTCCACGCCCCAACACGAATGGTGAATCAACTAAGCCGACCCTCGAAAACTCATCTTCTACCAGAATTATGGAGAAACGCTGT
AAGCCCATGAGCTCCGTGCTCATAGAAACCGTGGCCAAAGGAAATATTGTGGATCGTGTTGCATCCCTTGAAAACAAGGTCTCCAAGCTGAGTGAGGATTTAGAGCGAATGATCCCCTCTTCTCGGTCCAGTTCGTTAGGAAGAGACGCAATAAATGTTAATATGAAGGAGGGATCGAATACGGTTACTGGGTTGAACAT
TTTTGAGGAAGAGAAGCACCAGGTCCTGCCCCTCGAGGAGGAATGTTTCCGAAAAGGCGTTCATGAAAACATTTCCATGCCCAGGCCTCCTCATTTACAACTTGACATATCCAAGTCTAATATCTCTCCACATGGAGAGAAAAATGATGAAAATGTTCTTGCTGATCGAAAGAATATTAGTGAAAATCTACAAAAAGGGG
TGATGGATGGAGAATCGGAAACAAAAGCGAATAAGAAAATTGCAAGCAAAAATGCAACCACGGCAACAGGAGTGAATACAAAAAATAGATTCAGCAAAGATGAGAATAAAAGTCCCACTAAAAGTGGAACAGGAAAGCTCAGGCACCTCCTCCCGGGATGCATTTTCTCGCATTCTCCTAAAGCATAGTTTTGTATAACT
TCTTCTATCCCAATAAGATAAATTAGGATAGTACATAAGAAAATATTGTAGAATAATGTCCTCTTTTCTTTTCTCTGAAGAAAAAATATTATGCTAGGATCTGTATATATCATCATCGTTTGTCTTATCATAAGATGGATCCATGGACATGCGAAGGATAAACAAATCTTTCGCTTTCGTTGTATACATTCTTCTTAATT
TAAGTACATAGCTTGCTCATGTATGCACAGCTTTTTTTAATTAAAGGTTACTTATGGTATAAAAAA
>TRINITY_DN40389_c0_g1_i3 from sample A10 / Example unspliced isoform:GCTTCTCTGTATGAAATCCCATTTCCCATTGCAATTATTCAACAAACCAACACAATCTCGCCGACATTGTTATCATTCGGAGTACAAGAAGCACACGCTTCCTAGATCGGAACAAGgtcagttagtgtactggatcatgatcacaaaggataggccaatgcgtcgaatgctcataaatttgcatataaccagcaattagt
gtactatttactgtctttaaatacttctctagaaccgtctgctaccgcatctcagttatttattttgtgataggtttgggaaattgatgccttacatgcagagggcacgtactctgaattgttactgaattgtgacaggtggtttggccgagaagagaactttgtgttttggttgctaaggcgatcgatatcttgattac
agTTTATAACTATGGAGCACCAACTCAGGCCCAATGAGCCTTTCATATTTGGCACACATCCTTGTGCTTCTGTGGGGATCGTCAGAGAGATCAGCACTATTCTTCAAACTCCGGCTGCGTTTGGATGCGGGATCGAATCCACGGAGATACTTAATGTTTCTATCACTTCCAGTACCACTGACGCCCCTGAAGACCACCGC
CAGGAATTTGTGAGTTTCAGCTCTACCAAACAGTCTGCACAGGATTTTGATTCCAAGGAAAATAATGACGAGGGCTTCGATTATAGCTCTCAAAACCGGGATTCTGAAATCAATGGGCCAGTTACTGAAACAGTAGGTGATGCTGTTGAACCAGAGCAGGCCGATTCAAGCTGCGTAAAGAGGTCATCTAGTAAGAGTAC
AGGTATGGAACAAATTGCATATGAATCAAATACGAAGGAAAACAACAGGGAAATGAACGAAGACGAAATCAGCAGCGGAAAGAAAGGGGGAGAGCCAATGTCTCCTGTATCTTCCACCACTGCTCCTCTCCTTACCAGACTGGATCGTCTCGATGTCGTTCTTGCATATCTAGAGGAGAAAAGTTTATCCAGTGGGCATT
CTACTCCACGCCCCAACACGAATGGTGAATCAACTAAGCCGACCCTCGAAAACTCATCTTCTACCAGAATTATGGAGAAACGCTGTAAGCCCATGAGCTCCGTGCTCATAGAAACCGTGGCCAAAGGAAATATTGTGGATCGTGTTGCATCCCTTGAAAACAAGGTCTCCAAGCTGAGTGAGGATTTAGAGCGAATGATC
CCCTCTTCTCGGTCCAGTTCGTTAGGAAGAGACGCAATAAATGTTAATATGAAGGAGGGATCGAATACGGTTACTGGGTTGAACATTTTTGAGGAAGAGAAGCACCAGGTCCTGCCCCTCGAGGAGGAATGTTTCCGAAAAGGCGTTCATGAAAACATTTCCATGCCCAGGCCTCCTCATTTACAACTTGACATATCCAA
GTCTAATATCTCTCCACATGGAGAGAAAAATGATGAAAATGTTCTTGCTGATCGAAAGAATATTAGTGAAAATCTACAAAAAGGGGTGATGGATGGAGAATCGGAAACAAAAGCGAATAAGAAAATTGCAAGCAAAAATGCAACCACGGCAACAGGAGTGAATACAAAAAATAGATTCAGCAAAGATGAGAATAAAAGTC
CCACTAAAAGTGGAACAGGAAAGCTCAGGCACCTCCTCCCGGGATGCATTTTCTCGCATTCTCCTAAAGCATAGTTTTGTATAACTTCTTCTATCCCAATAAGATAAATTAGGATAGTACATAAGAAAATATTGTAGAATAATGTCCTCTTTTCTTTTCTCTGAAGAAAAAATATTATGCTAGGATCTGTATATATCATC
ATCGTTTGTCTTATCATAAGATGGATCCATGGACATGCGAAGGATAAACAAATCTTTCGCTTTCGTTGTATACATTCTTCTTAATTTAAGTACATAGCTTGCTCATGTATGCACAGCTTTTTTTAATTAAAGGTTACTTATGGTATAAAAAA
Intron 2 GTTTGGGAAA ... ATTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 1 | 0 | 8 |
| A2 | 66.67 | 1 | 0 | 4 |
| A3 | 43.59 | 11 | 7 | 10 |
| A4 | 33.33 | 6 | 0 | 6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 60 | 4 | 5 | 7 |
| A7 | 0 | 6 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 2 | 1 | 1 |
| A10 | 100 | 0 | 0 | 2 |
>TRINITY_DN105821_c0_g1_i2 from sample A3 / Example spliced isoformTCGGAACTCGAGAGATCAGCACCGCTTCTCTGTATGAAATCCCATTTCCCATTGCAATTATTCAACAAACCAACACAATTTCGCCGACATTGTTATCATTCGGAGTACAAGAAGCACACGCTTCCTAGATCGGAACAAGGTGGTTTGGCCGAGAAGAGAACTTTGTGTTTTGGTTGCTAAGGCGATCGATATCTTGATTA
CAGTTTATAACTATGGAGCACCAACTCAGGCCCAATGAGCCTTTCATATTTGGCACACATCCTTGTGCTTCTGTGGGGATCGTCAGAGAGATCAGCACTATTCTTCAAACTCCGGCTGCGTTTGGATGCGGGATCGAATCCACGGAGATACTTAATGTTTCTATCACTTCCAGTACCACTGACGCCCCTGAAGACCACCG
CCAGGAATTTGTGAGTTTCAGCTCTACCAAACAGTCTGCACAGGATTTTGATTCCAAGGAAAATAATGACGAGGGCTTCGATTATAGCTCTCAAAACCGGGATTCTGAAATCAATGGGCCAGTTACTGAAACAGTAGGTGATGCTGTTGAACCAGAGCAGGCCGATTCAAGCTGCGTAAAGAGGTCATCTAGTAAGAGTA
CAGGTATGGAACAAATTGCATATGAATCAAATACGAAGGAAAACAACAGGGAAATGAACGAAGACGAAATCAGCAGCGGAAAGAAAGGGGGAGAGCCAATGTCTCCTGTATCTTCCACCACTGCTCCTCTCCTTACCAGACTGGATCGTCTCGATGTCGTTCTTGCATATCTAGAGGAGAAAAGTTTATCCAGTGGGCAT
TCTACTCCACGCCCCAACACGAATGGTGAATCAACTAAGCCGACCCTCGAAAACTCATCTTCTACCAGAATTATGGAGAAACACTGTAAGCCCATGAGCTCCGTGCTCATAGAAACCGTGGCCAAAGGAAATATTGTGGATCGTGTTGCATCCCTTGAAAACAAGGTCTCCAAGCTGAGTGAGGATTTAGAGCGAATGAT
CCCCTCTTCTCGGTCCAGTTCGTTAGGAAGAGACGCAATAAATGTTAATATGAAGGAGGGATCGAATACGGCTACTGGGTTGAACATTTTTGAGGAAGAGAAGCACCAGGTCCTGCCCCTCGAGGAGGAATGTTTCCGAAAAGGCGTTCATGAAAACATTTCCATGCCCAGGCCTCCTCATTTACAACTTGACATATCCA
AGTCTAATATCTCTCCACATGGAGAGAAAAATGATGAAAATGTTCTTGCTGATCGAAAGAATATTAGTGAAAATCTACAAAAAGGGGTGATGGATGGAGAATCGGAAACAAAAGCGAATAAGAAAATTGCAAGCAAAAATGCAACCACGGCAACAGGAGTGAATACAAAAAATAGATTCAGCAAAGATGAGAATAAAAGT
CCCACTAAAAGTGGAACAGGAAAGCTCAGGCACCTCCTCCCGGGATGCATTTTCTCGCATTCTCCTAAAGCATAGTTTTGTATAACTTCTTCTATCCCAATAAGATAAATTAGGATAGTACATAAGAAAATATTGTAGAATAATGTCCTCTTTTCTTTTCTCTGAAGAAAAAATATTATGCTAGG
>TRINITY_DN105821_c0_g1_i5 from sample A3 / Example unspliced isoform:TCGGAACTCGAGAGATCAGCACCGCTTCTCTGTATGAAATCCCATTTCCCATTGCAATTATTCAACAAACCAACACAATTTCGCCGACATTGTTATCATTCGGAGTACAAGAAGCACACGCTTCCTAGATCGGAACAAGgtttgggaaattgatgccttacatgcagagggcacgtactctgaattgttactgaattgtg
acagGTGGTTTGGCCGAGAAGAGAACTTTGTGTTTTGGTTGCTAAGGCGATCGATATCTTGATTACAGTTTATAACTATGGAGCACCAACTCAGGCCCAATGAGCCTTTCATATTTGGCACACATCCTTGTGCTTCTGTGGGGATCGTCAGAGAGATCAGCACTATTCTTCAAACTCCGGCTGCGTTTGGATGCGGGATC
GAATCCACGGAGATACTTAATGTTTCTATCACTTCCAGTACCACTGACGCCCCTGAAGACCACCGCCAGGAATTTGTGAGTTTCAGCTCTACCAAACAGTCTGCACAGGATTTTGATTCCAAGGAAAATAATGACGAGGGCTTCGATTATAGCTCTCAAAACCGGGATTCTGAAATCAATGGGCCAGTTACTGAAACAGT
AGGTGATGCTGTTGAACCAGAGCAGGCCGATTCAAGCTGCGTAAAGAGGTCATCTAGTAAGAGTACAGGTATGGAACAAATTGCATATGAATCAAATACGAAGGAAAACAACAGGGAAATGAACGAAGACGAAATCAGCAGCGGAAAGAAAGGGGGAGAGCCAATGTCTCCTGTATCTTCCACCACTGCTCCTCTCCTTA
CCAGACTGGATCGTCTCGATGTCGTTCTTGCATATCTAGAGGAGAAAAGTTTATCCAGTGGGCATTCTACTCCACGCCCCAACACGAATGGTGAATCAACTAAGCCGACCCTCGAAAACTCATCTTCTACCAGAATTATGGAGAAACACTGTAAGCCCATGAGCTCCGTGCTCATAGAAACCGTGGCCAAAGGAAATATT
GTGGATCGTGTTGCATCCCTTGAAAACAAGGTCTCCAAGCTGAGTGAGGATTTAGAGCGAATGATCCCCTCTTCTCGGTCCAGTTCGTTAGGAAGAGACGCAATAAATGTTAATATGAAGGAGGGATCGAATACGGCTACTGGGTTGAACATTTTTGAGGAAGAGAAGCACCAGGTCCTGCCCCTCGAGGAGGAATGTTT
CCGAAAAGGCGTTCATGAAAACATTTCCATGCCCAGGCCTCCTCATTTACAACTTGACATATCCAAGTCTAATATCTCTCCACATGGAGAGAAAAATGATGAAAATGTTCTTGCTGATCGAAAGAATATTAGTGAAAATCTACAAAAAGGGGTGATGGATGGAGAATCGGAAACAAAAGCGAATAAGAAAATTGCAAGCA
AAAATGCAACCACGGCAACAGGAGTGAATACAAAAAATAGATTCAGCAAAGATGAGAATAAAAGTCCCACTAAAAGTGGAACAGGAAAGCTCAGGCACCTCCTCCCGGGATGCATTTTCTCGCATTCTCCTAAAGCATAGTTTTGTATAACTTCTTCTATCCCAATAAGATAAATTAGGATAGTACATAAGAAAATATTG
TAGAATAATGTCCTCTTTTCTTTTCTCTGAAGAAAAAATATTATGCTAGG